RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 CDKL2Q92772 493 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 FAM122AQ96E09 287 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 KIR2DL4Q99706 377 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 KRTAP4-4Q9BYR3 166 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 UPF3BQ9BZI7 483 aaKnown RBP3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 SYT4Q9H2B2 425 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 UCK1Q9HA47 277 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 MCUBQ9NWR8 336 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 IL17CQ9P0M4 197 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 SLC2A6Q9UGQ3 507 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 KLHL21Q9UJP4 597 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 POFUT2Q9Y2G5 429 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 V9GYY9 64 aa3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 LRPPRCP42704 1394 aaKnown RBP3.98□□□□□ -1.77
CCDC88A-206ENST00000430086 UBN2Q6ZU65 1347 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 PRSS37A4D1T9 235 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 E9PLD3 99 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 ITGB1BP1O14713 200 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 PRMT5O14744 637 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 EEDO75530 441 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 ZMPSTE24O75844 475 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 CD160O95971 181 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 LALBAP00709 142 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 FGGP02679 453 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 PNMA6AP0CW24 399 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 IGHV1-2P23083 117 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 PSMB6P28072 239 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 UGT1A3P35503 534 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 P2RY2P41231 377 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 HAAOP46952 286 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 TFPI2P48307 235 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 GPM6AP51674 278 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 PLK1P53350 603 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 VSNL1P62760 191 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 MRPS11P82912 194 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 DMC1Q14565 340 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 KCNJ11Q14654 390 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 PSMD5Q16401 504 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 FAM120AOSQ5T036 256 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 ADNP2Q6IQ32 1131 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 C1orf94Q6P1W5 598 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 CDKL3Q8IVW4 592 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 PDIK1LQ8N165 341 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 SVOPLQ8N434 492 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 NECAP1Q8NC96 275 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 OR5K2Q8NHB8 316 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 ZNF514Q96K75 400 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 OR8B4Q96RC9 309 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 SORT1Q99523 831 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 KCTD14Q9BQ13 255 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 C7orf50Q9BRJ6 194 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 C19orf24Q9BVV8 132 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 CHID1Q9BWS9 393 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 ARMC7Q9H6L4 198 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 LRRC19Q9H756 370 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 RETNQ9HD89 108 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 PRSS16Q9NQE7 514 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 PAK1IP1Q9NWT1 392 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 STMN3Q9NZ72 180 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 NYAP2Q9P242 653 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 SLC17A7Q9P2U7 560 aa3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 APOBEC3BQ9UH17 382 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 PUS1Q9Y606 427 aaKnown RBP eCLIP3.97□□□□□ -1.77
CCDC88A-206ENST00000430086 IGLV8-61A0A075B6I0 122 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 A0A1B0GTI1 187 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 TSPAN11A1L157 253 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 SLC22A20A6NK97 555 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 VSTM2BA6NLU5 285 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 F8VZ95 297 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 PLPP1O14494 284 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 RAD51BO15315 384 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 HDAC3O15379 428 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 CLIC3O95833 236 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 KLK1P06870 262 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 RHOCP08134 193 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 KRTAP5-9P26371 169 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 HTR1FP30939 366 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 UGT2B10P36537 528 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 CRISP1P54107 249 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 CLDN6P56747 220 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 RIPPLY3P57055 190 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 UBE2MP61081 183 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 RPS15AP62244 130 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 ITGB3BPQ13352 177 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 PIGHQ14442 188 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 ARL6IP1Q15041 203 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 TRMT5Q32P41 509 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF658Q5TYW1 1059 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF691Q5VV52 312 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 TMIGD1Q6UXZ0 262 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 SSX6Q7RTT6 188 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 CRLF3Q8IUI8 442 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 NRMQ8IXM6 262 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 RNF10Q8N5U6 811 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 OR6K6Q8NGW6 343 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 OR6K2Q8NGY2 324 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 ITFG1Q8TB96 612 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF502Q8TBZ5 544 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 ACER1Q8TDN7 264 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 SMARCD2Q92925 531 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms