RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PTGDSP41222 190 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 ATP12AP54707 1039 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 NME5P56597 212 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 GPAT3Q53EU6 434 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 KRBOX4Q5JUW0 171 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 SPANXN4Q5MJ08 99 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 MEX3BQ6ZN04 569 aaKnown RBP5.57□□□□□ -1.52
USP40-202ENST00000409945 Q75L30 129 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 EIF3MQ7L2H7 374 aaKnown RBP5.57□□□□□ -1.52
USP40-202ENST00000409945 UBQLNLQ8IYU4 475 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 FADS6Q8N9I5 356 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 ZNF540Q8NDQ6 660 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 BBS10Q8TAM1 723 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 FAM110BQ8TC76 370 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 TMEM234Q8WY98 164 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 GIMAP5Q96F15 307 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 C16orf58Q96GQ5 468 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 ZNF582Q96NG8 517 aaPredicted RBP5.57□□□□□ -1.52
USP40-202ENST00000409945 CCDC115Q96NT0 180 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 OR7D2Q96RA2 312 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 THTPAQ9BU02 230 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 KCNK15Q9H427 330 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 SLA2Q9H6Q3 261 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 WDR55Q9H6Y2 383 aaPredicted RBP5.57□□□□□ -1.52
USP40-202ENST00000409945 SERINC1Q9NRX5 453 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 MCTS1Q9ULC4 181 aaKnown RBP5.57□□□□□ -1.52
USP40-202ENST00000409945 OR2W1Q9Y3N9 320 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 N6AMT1Q9Y5N5 214 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 PHF3Q92576 2039 aaKnown RBP5.57□□□□□ -1.52
USP40-202ENST00000409945 CENPEQ02224 2701 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 PCNX1Q96RV3 2341 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 IGLV3-32A0A0A0MS00 114 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 LINC00854A0A1B0GVQ3 168 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 ZNF264O43296 627 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 EIF4E2O60573 245 aaKnown RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 FKBP6O75344 327 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 PLGP00747 810 aaPredicted RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 CRHP06850 196 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 COX4I1P13073 169 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 PGCP20142 388 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 TCEA1P23193 301 aaKnown RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 PPIBP23284 216 aaKnown RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 MAP3K8P41279 467 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 ASCL1P50553 236 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 P2RX1P51575 399 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 CCR4P51679 360 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 POLR2JP52435 117 aaKnown RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 GAS1P54826 345 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 ACTR3P61158 418 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 RCN1Q15293 331 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 ARHGAP11BQ3KRB8 267 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 C1orf146Q5VVC0 180 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 GLCCI1Q86VQ1 547 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 ANKRD46Q86W74 232 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 TMEM219Q86XT9 240 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 CCDC71Q8IV32 467 aaPredicted RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 MCEMP1Q8IX19 187 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 CLECL1Q8IZS7 167 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 MIPOL1Q8TD10 442 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 RNF138Q8WVD3 245 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 SMPDL3BQ92485 455 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 NEURL3Q96EH8 262 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 SH3YL1Q96HL8 342 aaPredicted RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 SFXN3Q9BWM7 321 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 OR51I1Q9H343 314 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 OPA3Q9H6K4 179 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 SLC7A8Q9UHI5 535 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 PRPF19Q9UMS4 504 aaKnown RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 VDAC3Q9Y277 283 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 SLC35A3Q9Y2D2 325 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 WDR45Q9Y484 360 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 FAM215AQ9Y5M1 114 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 SPIN1Q9Y657 262 aaPredicted RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 A0A0B4J293 547 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 SLC22A20A6NK97 555 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 EEF1E1-BLOC1S5C9J1V9 151 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 EEF1E1O43324 174 aaKnown RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 GMFGO60234 142 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 GOSR1O95249 250 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 CSTAP01040 98 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 GUSBP08236 651 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 ZNF708P17019 499 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 FKBP2P26885 142 aaKnown RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 ELK4P28324 431 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 VHLP40337 213 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 CAPZA2P47755 286 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 SLC6A8P48029 635 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 SLC34A1Q06495 639 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 CYLC2Q14093 348 aaPredicted RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 MAPRE2Q15555 327 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 ZSWIM7Q19AV6 140 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 C9orf152Q5JTZ5 239 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 CCNJQ5T5M9 372 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 TNFAIP8L2Q6P589 184 aaPredicted RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 SHQ1Q6PI26 577 aaKnown RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 ZER1Q7Z7L7 766 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 GALNT10Q86SR1 603 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 GATSQ8NAP1 163 aa5.56□□□□□ -1.52
USP40-202ENST00000409945 CHDHQ8NE62 594 aaPredicted RBP5.56□□□□□ -1.52
USP40-202ENST00000409945 OR5D16Q8NGK9 328 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms