RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SLC10A2Q12908 348 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 KIR2DS3Q14952 304 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 SYT14P1Q58G82 188 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 GLYATL3Q5SZD4 288 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 AFMIDQ63HM1 303 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 EXOGQ9Y2C4 368 aaKnown RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 ABCD4O14678 606 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 GSTP1P09211 210 aaKnown RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 OR10J4P0C629 311 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 MTCP1P56278 107 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 HLXQ14774 488 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 CYB561A3Q8NBI2 242 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 AKR1E2Q96JD6 320 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 IGFLR1Q9H665 355 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF275Q9NSD4 429 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 Q9Y3F1 56 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 RREB1Q92766 1687 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 GCGP01275 180 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 OR4E1P0C645 316 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 RPL29P47914 159 aaKnown RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 DMWDQ09019 674 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 SMN1Q16637 294 aaKnown RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 NPSR1Q6W5P4 371 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 WDR61Q9GZS3 305 aaKnown RBP11.9□□□□□ -0.5
COL6A3-206ENST00000409809 PRSS16Q9NQE7 514 aa11.9□□□□□ -0.5
COL6A3-206ENST00000409809 SPINT3P49223 89 aa11.9□□□□□ -0.51
COL6A3-206ENST00000409809 HIST3H3Q16695 136 aa11.9□□□□□ -0.51
COL6A3-206ENST00000409809 TMEM217Q8N7C4 229 aa11.9□□□□□ -0.51
COL6A3-206ENST00000409809 PPP1R1CQ8WVI7 109 aa11.9□□□□□ -0.51
COL6A3-206ENST00000409809 APIPQ96GX9 242 aa11.9□□□□□ -0.51
COL6A3-206ENST00000409809 GPR12P47775 334 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 Q1RN00 199 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 FCRL6Q6DN72 434 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 SEZ6L2Q6UXD5 910 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 SSUH2Q9Y2M2 353 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 LAMB2P55268 1798 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 TMEM238LA0A1B0GVL6 79 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF320A2RRD8 509 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 A6NJY4 79 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 RAET1LQ5VY80 246 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 OR7E24Q6IFN5 339 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 DPPA3Q6W0C5 159 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 TMEM104Q8NE00 496 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 FIBINQ8TAL6 211 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 NUDCD2Q8WVJ2 157 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF845Q96IR2 970 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-206ENST00000409809 OR2A14Q96R47 310 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 RD3LP0DJH9 198 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF25P17030 456 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-206ENST00000409809 BTF3P20290 206 aaKnown RBP11.89□□□□□ -0.51
COL6A3-206ENST00000409809 NRLP54845 237 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 RPL24P83731 157 aaKnown RBP11.89□□□□□ -0.51
COL6A3-206ENST00000409809 TEX30Q5JUR7 227 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 EOGTQ5NDL2 527 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ISG20Q96AZ6 181 aaKnown RBP11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ABCA1O95477 2261 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 GPX2P18283 190 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ACVRL1P37023 503 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ARRB1P49407 418 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-206ENST00000409809 TMEM182Q6ZP80 229 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ERASQ7Z444 233 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 HGDQ93099 445 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 UBXN10Q96LJ8 280 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 KCNK15Q9H427 330 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF107Q9UII5 783 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-206ENST00000409809 HSPB8Q9UJY1 196 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 MMP24Q9Y5R2 645 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 UNC13CQ8NB66 2214 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 DNPH1O43598 174 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ESPNLQ6ZVH7 1005 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 MCATQ8IVS2 390 aaKnown RBP11.89□□□□□ -0.51
COL6A3-206ENST00000409809 PELI3Q8N2H9 469 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ARL14EPQ8N8R7 260 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-206ENST00000409809 SECTM1Q8WVN6 248 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 TRIB1Q96RU8 372 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 TMEM191AQ9H0A3 160 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 OR51M1Q9H341 326 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 HRASLSQ9HDD0 168 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 FBXL12Q9NXK8 326 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 GLCEO94923 617 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ERVS71-1P61550 626 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 VWA1Q6PCB0 445 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 OR2AE1Q8NHA4 323 aa11.89□□□□□ -0.51
COL6A3-206ENST00000409809 ABLIM3O94929 683 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 BLVRBP30043 206 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-206ENST00000409809 FGF9P31371 208 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-206ENST00000409809 PM20D1Q6GTS8 502 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 MMP21Q8N119 569 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 F5H5K5 113 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF345Q14585 488 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 OR2G6Q5TZ20 316 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 H2BFWTQ7Z2G1 175 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 ARFGAP1Q8N6T3 406 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 IL1F10Q8WWZ1 152 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 FAM71F1Q96KD3 344 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-206ENST00000409809 Q9N2K0 584 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 MEIKINA0A087WXM9 373 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 FZD6O60353 706 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 ABCD3P28288 659 aa11.88□□□□□ -0.51
COL6A3-206ENST00000409809 FAM3BP58499 235 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms