RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TNFRSF13BO14836 293 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 PPP1R2P9O14990 202 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 SURF4O15260 269 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 MPDU1O75352 247 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 UGT2B17O75795 530 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 NADKO95544 446 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OXTP01178 125 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 IGHV4-39P01824 125 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 RHOCP08134 193 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 TACSTD2P09758 323 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 FRMD6-AS1P0C7T7 363 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CBR1P16152 277 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 SERPINB1P30740 379 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 GPR183P32249 361 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 COILP38432 576 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 RFX2P48378 723 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 RGS6P49758 472 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 FBXW4P57775 412 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 RPS27AP62979 156 aaKnown RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 DYNC1I2Q13409 638 aaKnown RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 FLOT2Q14254 428 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 EMC2Q15006 297 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 MAD2L1BPQ15013 274 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 ATP6V1FQ16864 119 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 IMPG1Q17R60 797 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 PGGHGQ32M88 737 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 VWA2Q5GFL6 755 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 TIMM23BQ5SRD1 257 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 HES5Q5TA89 166 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 SSX6Q7RTT6 188 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 HIPK1Q86Z02 1210 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 VN1R2Q8NFZ6 395 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OR2Y1Q8NGV0 311 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OR4C3Q8NH37 302 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OR51F2Q8NH61 342 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 RPLP0P6Q8NHW5 317 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 SLC7A13Q8TCU3 470 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 GATAD1Q8WUU5 269 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 RNF133Q8WVZ7 376 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CDS1Q92903 461 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 FAM218AQ96MZ4 157 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 MICU1Q9BPX6 476 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 FAM173AQ9BQD7 235 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 NAT10Q9H0A0 1025 aaKnown RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 TPK1Q9H3S4 243 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 TUBB1Q9H4B7 451 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 ADGRL4Q9HBW9 690 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 ASCL3Q9NQ33 180 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 MEPEQ9NQ76 525 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 INTS9Q9NV88 658 aaKnown RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 PLEKHJ1Q9NW61 149 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 HRASLS2Q9NWW9 162 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 NUDT4Q9NZJ9 180 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CCDC59Q9P031 241 aaKnown RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 NYAP2Q9P242 653 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 COPS3Q9UNS2 423 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 NTNG1Q9Y2I2 539 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 WIF1Q9Y5W5 379 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 USP42Q9H9J4 1324 aaKnown RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 ARID2Q68CP9 1835 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CNTLNQ9NXG0 1405 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CFAP74Q9C0B2 1584 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 C3P01024 1663 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 A0A0A6YYD5 115 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 TRBV7-9A0A0J9YWB2 115 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 GLYATL1P3A0A0U1RQE8 302 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 TSPAN11A1L157 253 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 TVP23AA6NH52 213 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 hCG_2039718K7EN88 272 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 FCN1O00602 326 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 INPP4BO15327 924 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 NDUFA2O43678 99 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 LYPLA2O95372 231 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 GJB5O95377 273 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 HBE1P02100 147 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 RPLP0P05388 317 aaKnown RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CCDC166P0CW27 439 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 GIMD1P0DJR0 217 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 LIFP15018 202 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OR1E1P30953 314 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 RBM34P42696 430 aaKnown RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 SLC35B1P78383 322 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 GAGE5Q13069 117 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 GAGE6Q13070 117 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 DPYSL3Q14195 570 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OXA1LQ15070 435 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 PSG5Q15238 335 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 ACTL10Q5JWF8 245 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 FFAR4Q5NUL3 377 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OR2G6Q5TZ20 316 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OR52E8Q6IFG1 317 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 ARMCX5Q6P1M9 558 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 METTL7BQ6UX53 244 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 GDPD4Q6W3E5 623 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 Q6ZSR9 355 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CMC1Q7Z7K0 106 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 CYP4Z2PQ8N1L4 340 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 C2orf73Q8N5S3 287 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OR9Q2Q8NGE9 314 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 OR5T2Q8NGG2 359 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms