RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 KIAA1549Q9HCM3 1950 aa12.55□□□□□ -0.4
SKA1-202ENST00000398452 FLNCQ14315 2725 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 C12orf71A8MTZ7 269 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 E9PLN8 166 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 SELENOFO60613 162 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 CNOT4O95628 575 aaKnown RBP12.54□□□□□ -0.4
SKA1-202ENST00000398452 MT-ND2P03891 347 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 MSR1P21757 451 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 CTSSP25774 331 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 OPRM1P35372 400 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 SH3BGRP55822 239 aaPredicted RBP12.54□□□□□ -0.4
SKA1-202ENST00000398452 PMPCAQ10713 525 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 FAPQ12884 760 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 ETFDHQ16134 617 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 CEACAM16Q2WEN9 425 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 LINC01590Q5TEZ4 76 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 RTL6Q6ICC9 239 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 LRFN4Q6PJG9 635 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 FAM220AQ7Z4H9 259 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 ATCAYQ86WG3 371 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 KLHL36Q8N4N3 616 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 SNX33Q8WV41 574 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 FCGR1BQ92637 280 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 KISS1RQ969F8 398 aaPredicted RBP12.54□□□□□ -0.4
SKA1-202ENST00000398452 FOXN4Q96NZ1 517 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 TBX5Q99593 518 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 VKORC1Q9BQB6 163 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 MND1Q9BWT6 205 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 NELFAQ9H3P2 528 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 WDR76Q9H967 626 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 GPR35Q9HC97 309 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 SLC7A10Q9NS82 523 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 FKBP14Q9NWM8 211 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 OSGIN2Q9Y236 505 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 FAM215AQ9Y5M1 114 aa12.54□□□□□ -0.4
SKA1-202ENST00000398452 LRRK2Q5S007 2527 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 SVILO95425 2214 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 MAST4O15021 2626 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 ZNF593O00488 134 aaPredicted RBP12.53□□□□□ -0.4
SKA1-202ENST00000398452 GLI4P10075 376 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 C21orf33P30042 268 aaPredicted RBP12.53□□□□□ -0.4
SKA1-202ENST00000398452 HOXC12P31275 282 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 CAPZA2P47755 286 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 ZNF133P52736 654 aaPredicted RBP12.53□□□□□ -0.4
SKA1-202ENST00000398452 ACTA2P62736 377 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 ACTG2P63267 376 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 MRPS34P82930 218 aaKnown RBP12.53□□□□□ -0.4
SKA1-202ENST00000398452 PIGFQ07326 219 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 SLC18B1Q6NT16 456 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 KCTD18Q6PI47 426 aaPredicted RBP12.53□□□□□ -0.4
SKA1-202ENST00000398452 SLC26A10Q8NG04 563 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 THEM6Q8WUY1 208 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 ASB17Q8WXJ9 295 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 C11orf40Q8WZ69 217 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 RND1Q92730 232 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 RORBQ92753 470 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 NMD3Q96D46 503 aaKnown RBP12.53□□□□□ -0.4
SKA1-202ENST00000398452 FOXB1Q99853 325 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 RHNO1Q9BSD3 238 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 CDCA4Q9BXL8 241 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 POLE4Q9NR33 117 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 UBR5O95071 2799 aaPredicted RBP12.53□□□□□ -0.4
SKA1-202ENST00000398452 COL12A1Q99715 3063 aa12.53□□□□□ -0.4
SKA1-202ENST00000398452 IGKV1D-43A0A0B4J1Z2 117 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 CIB4A0PJX0 185 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 ZNF99A8MXY4 864 aaPredicted RBP12.52□□□□□ -0.41
SKA1-202ENST00000398452 RPL36A-HNRNPH2H7BZ11 118 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 DVL2O14641 736 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 GPANK1O95872 356 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 IGHA1P01876 353 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 OR8G3PP0DMU2 310 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 MPGP29372 298 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 CDAP32320 146 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 CA7P43166 264 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 KIR2DL2P43627 348 aaPredicted RBP12.52□□□□□ -0.41
SKA1-202ENST00000398452 PCBD1P61457 104 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 LSM6P62312 80 aaKnown RBP12.52□□□□□ -0.41
SKA1-202ENST00000398452 EIF2B1Q14232 305 aaKnown RBP12.52□□□□□ -0.41
SKA1-202ENST00000398452 MED22Q15528 200 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 NEDD8Q15843 81 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 PHYHD1Q5SRE7 291 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 TFAP2EQ6VUC0 442 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 ZNF813Q6ZN06 617 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 PLEKHG7Q6ZR37 379 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 BEND4Q6ZU67 534 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 KCTD8Q6ZWB6 473 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 DPY19L4Q7Z388 723 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 LHFPL3Q86UP9 236 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 WDFY1Q8IWB7 410 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 TIGD4Q8IY51 512 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 SPARTQ8N0X7 666 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 ZNRF4Q8WWF5 429 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 NANOS1Q8WY41 292 aaKnown RBP12.52□□□□□ -0.41
SKA1-202ENST00000398452 ALG8Q9BVK2 526 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 PIGMQ9H3S5 423 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 MARCH7Q9H992 704 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 SIAEQ9HAT2 523 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 TMEM38BQ9NVV0 291 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 PAK1IP1Q9NWT1 392 aaPredicted RBP12.52□□□□□ -0.41
SKA1-202ENST00000398452 MALT1Q9UDY8 824 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms