RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 TRBV5-7A0A0A0MS05 114 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 RDH16O75452 317 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 CTSBP07858 339 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 MYOGP15173 224 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 CD34P28906 385 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 KIR3DL2P43630 455 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 PRPS1P60891 318 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 SNTB1Q13884 538 aaKnown RBP12.39□□□□□ -0.43
USP49-201ENST00000373006 RAB11BQ15907 218 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 WDR38Q5JTN6 314 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 ENPP7Q6UWV6 458 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 FLVCR1-AS1Q8TAF5 88 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 SYT4Q9H2B2 425 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 THAP10Q9P2Z0 257 aaPredicted RBP12.39□□□□□ -0.43
USP49-201ENST00000373006 TNFSF18Q9UNG2 199 aa12.39□□□□□ -0.43
USP49-201ENST00000373006 RPH3AQ9Y2J0 694 aaPredicted RBP12.39□□□□□ -0.43
USP49-201ENST00000373006 SPTBN5Q9NRC6 3674 aaKnown RBP12.39□□□□□ -0.43
USP49-201ENST00000373006 IGKV1D-42A0A075B6H8 117 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 TBC1D3DA0A087WVF3 549 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 TBC1D3IA0A087WXS9 549 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 RNF222A6NCQ9 220 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 TBC1D3LB9A6J9 549 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 HCRTR1O43613 425 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 CDC40O60508 579 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP49-201ENST00000373006 SRPX2O60687 465 aaPredicted RBP12.38□□□□□ -0.43
USP49-201ENST00000373006 TBC1D3HP0C7X1 549 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ACTR1BP42025 376 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ACTR1AP61163 376 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 SRSF3P84103 164 aaKnown RBP12.38□□□□□ -0.43
USP49-201ENST00000373006 ERV3-1Q14264 604 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 TGIF1Q15583 401 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 OR7A5Q15622 319 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 TBC1D3CQ6IPX1 549 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 CDC20BQ86Y33 519 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ZNF595Q8IYB9 648 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 TBC1D3Q8IZP1 549 aaPredicted RBP12.38□□□□□ -0.43
USP49-201ENST00000373006 GPX8Q8TED1 209 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 KCNG2Q9UJ96 466 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 PRSS38A1L453 326 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 FITM1A5D6W6 292 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 TIMP1P01033 207 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 HLA-DQA2P01906 255 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ADCYAP1P18509 176 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 AVPR2P30518 371 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 LSSP48449 732 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 SMCO1Q147U7 214 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ITPRIPL2Q3MIP1 535 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 C3orf33Q6P1S2 294 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 OR5M8Q8NGP6 311 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 PATE1Q8WXA2 126 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 NKD1Q969G9 470 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 MCHR2Q969V1 340 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ZFYVE21Q9BQ24 234 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 POTEKPQ9BYX7 375 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 SLC19A3Q9BZV2 496 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 C1orf198Q9H425 327 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 LYRM4Q9HD34 91 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ASH2LQ9UBL3 628 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 GRHPRQ9UBQ7 328 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 UPB1Q9UBR1 384 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 CGGBP1Q9UFW8 167 aaPredicted RBP12.38□□□□□ -0.43
USP49-201ENST00000373006 TMEM218A2RU14 115 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 DCDC2BA2VCK2 349 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 AGPAT2O15120 278 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 BCL2L11O43521 198 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 FADS1O60427 444 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 TMEM127O75204 238 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 KAT7O95251 611 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 CD14P08571 375 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ALOX5APP20292 161 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 PTGFRP43088 359 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 TAS2R19P59542 299 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 RPS4XP62701 263 aaKnown RBP12.38□□□□□ -0.43
USP49-201ENST00000373006 SQSTM1Q13501 440 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 PDGFRLQ15198 375 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 TMEM71Q6P5X7 295 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 POMZP3Q6PJE2 187 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 NPSR1Q6W5P4 371 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 FAM122BQ7Z309 247 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ZNF761Q86XN6 746 aaPredicted RBP12.38□□□□□ -0.43
USP49-201ENST00000373006 SFTPA2Q8IWL1 248 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 CA13Q8N1Q1 262 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 BPIFB2Q8N4F0 458 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ZSCAN1Q8NBB4 408 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 OR1J4Q8NGS1 313 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 FAM117AQ9C073 453 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 ALX4Q9H161 411 aaPredicted RBP12.38□□□□□ -0.43
USP49-201ENST00000373006 HEBP2Q9Y5Z4 205 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 LAMA1P25391 3075 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 WDR87Q6ZQQ6 2873 aa12.38□□□□□ -0.43
USP49-201ENST00000373006 LOC100289279A0A1B0GTE1 492 aa12.37□□□□□ -0.43
USP49-201ENST00000373006 OR14I1A6ND48 311 aa12.37□□□□□ -0.43
USP49-201ENST00000373006 TMEM212A6NML5 194 aa12.37□□□□□ -0.43
USP49-201ENST00000373006 GNRH1P01148 92 aa12.37□□□□□ -0.43
USP49-201ENST00000373006 S1PR1P21453 382 aa12.37□□□□□ -0.43
USP49-201ENST00000373006 PTAFRP25105 342 aa12.37□□□□□ -0.43
USP49-201ENST00000373006 RPS21P63220 83 aaKnown RBP12.37□□□□□ -0.43
USP49-201ENST00000373006 DMWDQ09019 674 aa12.37□□□□□ -0.43
USP49-201ENST00000373006 PDZK1IP1Q13113 114 aa12.37□□□□□ -0.43
USP49-201ENST00000373006 DEFB110Q30KQ9 67 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms