RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ZNF432O94892 652 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 HRGP04196 525 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 NTF4P34130 210 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 MAGEB1P43366 347 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 MTNR1BP49286 362 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 IFITM3Q01628 133 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 ALKBH1Q13686 389 aaKnown RBP12.24□□□□□ -0.45
PTPRF-202ENST00000372405 CORO6Q6QEF8 472 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 TRILQ7L0X0 811 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 CCDC190Q86UF4 302 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF679Q8IYX0 411 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 TMEM123Q8N131 208 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 PRSS35Q8N3Z0 413 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 OR2G2Q8NGZ5 317 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 OR2V1Q8NHB1 315 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 ASB17Q8WXJ9 295 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 SCMH1Q96GD3 660 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 OR2M2Q96R28 347 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 OR14A2Q96R54 314 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 TTYH2Q9BSA4 534 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 SLC6A15Q9H2J7 730 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 B4GALT7Q9UBV7 327 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 KLF13Q9Y2Y9 288 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-202ENST00000372405 NCOA6Q14686 2063 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-202ENST00000372405 SPENQ96T58 3664 aaKnown RBP12.24□□□□□ -0.45
PTPRF-202ENST00000372405 OR4C45A6NMZ5 311 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF726A6NNF4 738 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 CDK2AP1O14519 115 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 EFSO43281 561 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 GPRIN2O60269 458 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 PNPP00491 289 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 QDPRP09417 244 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 LAP3P28838 519 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 CDAP32320 146 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 S100A5P33763 92 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 KIR3DL2P43630 455 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 EIF1AXP47813 144 aaKnown RBP12.23□□□□□ -0.45
PTPRF-202ENST00000372405 LHX2P50458 406 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 CCL11P51671 97 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 CDC20Q12834 499 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 HYAL4Q2M3T9 481 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 UNQ9370/PRO34162Q6UXP9 181 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 HDDC2Q7Z4H3 204 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 DCXRQ7Z4W1 244 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 LAX1Q8IWV1 398 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF454Q8N9F8 522 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 OR52N5Q8NH56 324 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 FNDC8Q8TC99 324 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ROBO4Q8WZ75 1007 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF845Q96IR2 970 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-202ENST00000372405 MIXL1Q9H2W2 232 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 CRNNQ9UBG3 495 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF281Q9Y2X9 895 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 UGT2A1Q9Y4X1 527 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 A0A0G2JK05 382 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF716A6NP11 495 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 NPIPA2E9PIF3 369 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 NPIPA3F8WFD2 350 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 PIN1P1O15428 100 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 AQP8O94778 261 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 UCHL1P09936 223 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF823P16415 610 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 TNFSF8P32971 234 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ETV6P41212 452 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 SELENOPP49908 381 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 CLDN18P56856 261 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ARG2P78540 354 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ABLIM2Q6H8Q1 611 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-202ENST00000372405 CROCCP3Q8IVE0 287 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 TEX19Q8NA77 164 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ZFP62Q8NB50 900 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-202ENST00000372405 RNF128Q8TEB7 428 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF775Q96BV0 537 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ORAI1Q96D31 301 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 ATF6BQ99941 703 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 EMC7Q9NPA0 242 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 GLTPQ9NZD2 209 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 CYB5R1Q9UHQ9 305 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 LRP12Q9Y561 859 aa12.23□□□□□ -0.45
PTPRF-202ENST00000372405 A0A1W2PPL8 197 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 KLRC4-KLRK1H3BQV0 150 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 SRSF10O75494 262 aaKnown RBP12.22□□□□□ -0.45
PTPRF-202ENST00000372405 SERPINA3P01011 423 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 ITGB2P05107 769 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 CD46P15529 392 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 TNFSF10P50591 281 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 OR10A3P58181 314 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 NHLH1Q02575 133 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 MFGE8Q08431 387 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-202ENST00000372405 MRPL28Q13084 256 aaKnown RBP12.22□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF766Q5HY98 468 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 WDR38Q5JTN6 314 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 RNFT1Q5M7Z0 435 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 OR7E24Q6IFN5 339 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 FDX2Q6P4F2 183 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 C16orf87Q6PH81 154 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 PARP16Q8N5Y8 322 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 OR10S1Q8NGN2 331 aa12.22□□□□□ -0.45
PTPRF-202ENST00000372405 TMEM54Q969K7 222 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 145.9 ms