RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 BCKDHBP21953 392 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 BMPR1AP36894 532 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 NPSR1Q6W5P4 371 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 ZNF561Q8N587 486 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 ARRDC3Q96B67 414 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 TSSK2Q96PF2 358 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 ADAM19Q9H013 955 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 THSD7AQ9UPZ6 1657 aa17.91■□□□□ 0.46
CCDC88B-202ENST00000356786 TAAR5O14804 337 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 IGFBP6P24592 240 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 DIO1P49895 249 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 LINC00303Q3SY05 128 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 DCXRQ7Z4W1 244 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 DPPA2Q7Z7J5 298 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 FJX1Q86VR8 437 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 PPP1R1CQ8WVI7 109 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 ARSGQ96EG1 525 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 TXN2Q99757 166 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 PIAS3Q9Y6X2 628 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 BLACEA4D250 179 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 NME1P15531 152 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 HTRA3P83110 453 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 CYHR1Q6ZMK1 362 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 DCBLD2Q96PD2 775 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 COL4A1P02462 1669 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 LAMB2P55268 1798 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 TRAV20A0A0B4J274 112 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 SLC35A4Q96G79 324 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 WDFY2Q96P53 400 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 TAS2R4Q9NYW5 299 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 TMED7-TICAM2A0A0A6YYA0 188 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 MDFIC2A0A1B0GVS7 189 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 A0A1W2PR48 441 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 BIDP55957 195 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 TMEM176BQ3YBM2 270 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 RNLSQ5VYX0 342 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 ZNF775Q96BV0 537 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 DUSP22Q9NRW4 184 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 TM7SF3Q9NS93 570 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 TMED7Q9Y3B3 224 aa17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 XIRP1Q702N8 1843 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-202ENST00000356786 MCRIP1C9JLW8 97 aa17.89■□□□□ 0.46
CCDC88B-202ENST00000356786 CLDN1O95832 211 aa17.89■□□□□ 0.46
CCDC88B-202ENST00000356786 HLA-HP01893 362 aa17.89■□□□□ 0.46
CCDC88B-202ENST00000356786 SLC2A1P11166 492 aa17.89■□□□□ 0.46
CCDC88B-202ENST00000356786 SCGB2A2Q13296 93 aa17.89■□□□□ 0.46
CCDC88B-202ENST00000356786 BRICD5Q6PL45 260 aa17.89■□□□□ 0.46
CCDC88B-202ENST00000356786 TMEM182Q6ZP80 229 aaPredicted RBP17.89■□□□□ 0.46
CCDC88B-202ENST00000356786 PPP1R35Q8TAP8 253 aa17.89■□□□□ 0.46
CCDC88B-202ENST00000356786 C22orf15Q8WYQ4 148 aa17.89■□□□□ 0.46
CCDC88B-202ENST00000356786 HCRTR1O43613 425 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 SLC35E2P0CK97 266 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 OR8D4Q8NGM9 314 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 OR5M1Q8NGP8 315 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 ANKRD9Q96BM1 317 aaPredicted RBP17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 PCDHGA5Q9Y5G8 931 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 HSPB6O14558 160 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 CPN1P15169 458 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 SHDQ96IW2 340 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 ST6GAL2Q96JF0 529 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 WWTR1Q9GZV5 400 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 PI3P19957 117 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 FCGR2CP31995 323 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 MMP15P51511 669 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 LIM2P55344 173 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 TMEM71Q6P5X7 295 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 BPHLQ86WA6 291 aaPredicted RBP17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 SEH1LQ96EE3 360 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 OR14J1Q9UGF5 321 aa17.89■□□□□ 0.45
CCDC88B-202ENST00000356786 SPAG17Q6Q759 2223 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 UTS2O95399 124 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 TSFMP43897 325 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 MAP2K6P52564 334 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 CLPPQ16740 277 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 OR4C16Q8NGL9 310 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 NANOS1Q8WY41 292 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 CTNSO60931 367 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 IGLV3-25P01717 112 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 PCMT1P22061 227 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 HAGHQ16775 308 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 KIAA0895LQ68EN5 471 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 LSMEM1Q8N8F7 131 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 PIGTQ969N2 578 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 ABHD6Q9BV23 337 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 SLC6A17Q9H1V8 727 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 NXT1Q9UKK6 140 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 H7BYZ3 331 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 APLNRP35414 380 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 RPS27P42677 84 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 HTR5AP47898 357 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 ARV1Q9H2C2 271 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 BCL2L10Q9HD36 194 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 SCAF4O95104 1147 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 THBS1P07996 1170 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 CD37P11049 281 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 FGF9P31371 208 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 MSRB3Q8IXL7 192 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 PLK3Q9H4B4 646 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 PDFQ9HBH1 243 aa17.88■□□□□ 0.45
CCDC88B-202ENST00000356786 PRAMEF26H0Y7S4 382 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms