RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 Q6ZNX1 250 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 FAM214BQ7L5A3 538 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 GPR141Q7Z602 305 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 OR13F1Q8NGS4 319 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 OR2T4Q8NH00 348 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 AKR7LQ8NHP1 331 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 MS4A3Q96HJ5 214 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 PRDM14Q9GZV8 571 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 TP63Q9H3D4 680 aaPredicted RBP8.13□□□□□ -1.11
USP4-202ENST00000351842 PAK1IP1Q9NWT1 392 aaPredicted RBP8.13□□□□□ -1.11
USP4-202ENST00000351842 Q9UFV3 132 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 B9D1Q9UPM9 204 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 SLC5A6Q9Y289 635 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 ZNF593O00488 134 aaPredicted RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 RER1O15258 196 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 VAMP5O95183 116 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 GSTT2P0CG29 244 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 GSTT2BP0CG30 244 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 PGA4P0DJD7 388 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 PGA3P0DJD8 388 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 GRNP28799 593 aaKnown RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 SLC6A9P48067 706 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 GLO1Q04760 184 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 CDSNQ15517 529 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 INAQ16352 499 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 ZNF324BQ6AW86 544 aaPredicted RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 LAIR2Q6ISS4 152 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 RPUSD3Q6P087 351 aaKnown RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 LRRN1Q6UXK5 716 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 CD300LDQ6UXZ3 194 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 LIX1LQ8IVB5 337 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 SLC7A5P1Q8MH63 180 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 SLC43A2Q8N370 569 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 FNDC8Q8TC99 324 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 RNF122Q9H9V4 155 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 PROCRQ9UNN8 238 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 MRPS18CQ9Y3D5 142 aaKnown RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 A6NIN4 97 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 AHRRA9YTQ3 701 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 ZNF587BE7ETH6 402 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 E9PQ18 207 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 F5H5K5 113 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 J3QLW9 94 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 GPR171O14626 319 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 MAGEB3O15480 346 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 WNT11O96014 354 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 SCG5P05408 212 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 FCGR2AP12318 317 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 ZNF19P17023 458 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 PSMB9P28065 219 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 KIR2DL2P43627 348 aaPredicted RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 TMBIM6P55061 237 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 GABARAPL2P60520 117 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 KEAP1Q14145 624 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 POU4F3Q15319 338 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 GPR139Q6DWJ6 353 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 OR7E24Q6IFN5 339 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 ATCAYQ86WG3 371 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 COMMD2Q86X83 199 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 CA5BP1Q8WTZ4 195 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 GATAD2BQ8WXI9 593 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 RND1Q92730 232 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 TMEM203Q969S6 136 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 C12orf43Q96C57 262 aaKnown RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 NTNG2Q96CW9 530 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 ADAD1Q96M93 576 aaKnown RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 AMELYQ99218 206 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 PITX2Q99697 317 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 PLGRKTQ9HBL7 147 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 PALMDQ9NP74 551 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 WARS2Q9UGM6 360 aaKnown RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 GRIP1Q9Y3R0 1128 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 DAPL1A0PJW8 107 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 OR14I1A6ND48 311 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 TFP02787 698 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 MT-ND2P03891 347 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 ADRA2AP08913 450 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 OR8G3PP0DMU2 310 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 DBTP11182 482 aaKnown RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 EDN3P14138 238 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 FKBP2P26885 142 aaKnown RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 RNPS1Q15287 305 aaKnown RBP8.12□□□□□ -1.11
USP4-202ENST00000351842 TAF13Q15543 124 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 ZNF773Q6PK81 442 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 LINC00299Q6ZSB3 139 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 SSX6Q7RTT6 188 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 ZNF519Q8TB69 540 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 C11orf40Q8WZ69 217 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 GGHQ92820 318 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 CLCF1Q9UBD9 225 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 LAMP5Q9UJQ1 280 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 GNG8Q9UK08 70 aa8.12□□□□□ -1.11
USP4-202ENST00000351842 TLN2Q9Y4G6 2542 aa8.11□□□□□ -1.11
USP4-202ENST00000351842 H3BMQ9 156 aa8.11□□□□□ -1.11
USP4-202ENST00000351842 PRODHO43272 600 aa8.11□□□□□ -1.11
USP4-202ENST00000351842 DHHO43323 396 aa8.11□□□□□ -1.11
USP4-202ENST00000351842 LCKP06239 509 aa8.11□□□□□ -1.11
USP4-202ENST00000351842 GABRA1P14867 456 aa8.11□□□□□ -1.11
USP4-202ENST00000351842 LSM3P62310 102 aaKnown RBP8.11□□□□□ -1.11
USP4-202ENST00000351842 RBM48Q5RL73 367 aaKnown RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms