RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 FOXL2NBQ6ZUU3 175 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 OR4C15Q8NGM1 316 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 FBXO17Q96EF6 278 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 VNN3Q9NY84 501 aa13.68□□□□□ -0.22
CLN3-201ENST00000333496 YLPM1P49750 1951 aaKnown RBP13.67□□□□□ -0.22
CLN3-201ENST00000333496 TEX13CA0A0J9YWL9 993 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 PRSS37A4D1T9 235 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 OR4A8P0C604 315 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 FOSL1P15407 271 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 NPR2P20594 1047 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 NR4A1P22736 598 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 FPR3P25089 353 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 SERPINF1P36955 418 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 HSPA13P48723 471 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 AQP4P55087 323 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 CHRNB3Q05901 458 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 SGCAQ16586 387 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 SLC36A2Q495M3 483 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 SMARCD3Q6STE5 483 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 DPY19L2P2Q6ZN68 376 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 DNM1P46Q6ZS02 220 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 OR9Q2Q8NGE9 314 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 OR52D1Q9H346 318 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 ZNF442Q9H7R0 627 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 RNF121Q9H920 327 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 TMCC3Q9ULS5 477 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 IER3IP1Q9Y5U9 82 aa13.67□□□□□ -0.22
CLN3-201ENST00000333496 ZANQ9Y493 2812 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 H7C417 338 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 TNFRSF11BO00300 401 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 AHCYL1O43865 530 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 SCG5P05408 212 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 SNTB2Q13425 540 aaKnown RBP13.66□□□□□ -0.22
CLN3-201ENST00000333496 KRR1Q13601 381 aaKnown RBP13.66□□□□□ -0.22
CLN3-201ENST00000333496 DAG1Q14118 895 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 MSMPQ1L6U9 139 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 CLEC12BQ2HXU8 276 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 RFX4Q33E94 735 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 FAM98BQ52LJ0 330 aaKnown RBP13.66□□□□□ -0.22
CLN3-201ENST00000333496 FAM27BQ5VT28 67 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 LPCAT4Q643R3 524 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 GPR139Q6DWJ6 353 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 ZNF770Q6IQ21 691 aaPredicted RBP13.66□□□□□ -0.22
CLN3-201ENST00000333496 PTCHD4Q6ZW05 846 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 DPPA2Q7Z7J5 298 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 ADGRG5Q8IZF4 528 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 PAQR4Q8N4S7 273 aaPredicted RBP13.66□□□□□ -0.22
CLN3-201ENST00000333496 FANK1Q8TC84 345 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 C18orf12Q96KH6 178 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 TSC22D3Q99576 134 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 SMR3AQ99954 134 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 YIPF3Q9GZM5 350 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 GSX1Q9H4S2 264 aaPredicted RBP13.66□□□□□ -0.22
CLN3-201ENST00000333496 FBXL3Q9UKT7 428 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 AP4S1Q9Y587 144 aa13.66□□□□□ -0.22
CLN3-201ENST00000333496 TMEM129A0AVI4 362 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 DHRS12A0PJE2 317 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 H7C1Q1 480 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 SOCS2O14508 198 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 XKRYO14609 159 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 GPRIN2O60269 458 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 PPP1R3DO95685 299 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 TXNDC12O95881 172 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 CCL2P13500 99 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 CTLA4P16410 223 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 ZNF32P17041 273 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 CDKN2AP42771 156 aaKnown RBP13.65□□□□□ -0.22
CLN3-201ENST00000333496 TSPAN31Q12999 210 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 TNK1Q13470 666 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 EFNB3Q15768 340 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 TMEM53Q6P2H8 277 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 CPEB3Q8NE35 698 aaKnown RBP13.65□□□□□ -0.22
CLN3-201ENST00000333496 GNPDA2Q8TDQ7 276 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 CANT1Q8WVQ1 401 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 SLCO4A1Q96BD0 722 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 COX4I2Q96KJ9 171 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 BDH2Q9BUT1 245 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 NDEL1Q9GZM8 345 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 RAB26Q9ULW5 256 aa13.65□□□□□ -0.22
CLN3-201ENST00000333496 A0A1W2PPL8 197 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 B9A039 149 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 INHBBP09529 407 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 RAP2AP10114 183 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 LAP3P28838 519 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 IFNGR2P38484 337 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 RAB35Q15286 201 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 OR2T5Q6IEZ7 315 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 ZNF620Q6ZNG0 422 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 SLC30A7Q8NEW0 376 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 OR2T29Q8NH02 315 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 POP5Q969H6 163 aaKnown RBP13.64□□□□□ -0.23
CLN3-201ENST00000333496 SAMD8Q96LT4 415 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 ERMAPQ96PL5 475 aaPredicted RBP13.64□□□□□ -0.23
CLN3-201ENST00000333496 SYT4Q9H2B2 425 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 PLK3Q9H4B4 646 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 VSX1Q9NZR4 365 aaPredicted RBP13.64□□□□□ -0.23
CLN3-201ENST00000333496 PMF1-BGLAPU3KQ54 211 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 U3KQV3 271 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 DENRO43583 198 aaKnown RBP13.64□□□□□ -0.23
CLN3-201ENST00000333496 SSX4O60224 188 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms