RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SBK3P0C264 359 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 HABP2Q14520 560 aaPredicted RBP15.91■□□□□ 0.14
SYNPO-201ENST00000307662 SYS1Q8N2H4 156 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 F2RL1P55085 397 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 DOC2BQ14184 412 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 TMEM88Q6PEY1 159 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.91■□□□□ 0.14
SYNPO-201ENST00000307662 BTLAQ7Z6A9 289 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 BAP18Q8IXM2 172 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 LILRA3Q8N6C8 439 aaPredicted RBP15.91■□□□□ 0.14
SYNPO-201ENST00000307662 FGF20Q9NP95 211 aaPredicted RBP15.91■□□□□ 0.14
SYNPO-201ENST00000307662 OBP2BQ9NPH6 170 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 NXPH3O95157 252 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 OR4E1P0C645 316 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 GDF1P27539 372 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 C19orf47Q8N9M1 422 aaKnown RBP15.91■□□□□ 0.14
SYNPO-201ENST00000307662 UBL7Q96S82 380 aaPredicted RBP15.91■□□□□ 0.14
SYNPO-201ENST00000307662 ASB1Q9Y576 335 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 IFITM5A6NNB3 132 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 ZNF587BE7ETH6 402 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 OR4A16Q8NH70 328 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 SEH1LQ96EE3 360 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 KCNIP2Q9NS61 270 aa15.91■□□□□ 0.14
SYNPO-201ENST00000307662 NKX2-1P43699 371 aaPredicted RBP15.9■□□□□ 0.14
SYNPO-201ENST00000307662 SLC35A1P78382 337 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 DEFB103AP81534 67 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 TGFBR3Q03167 851 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 FCRL6Q6DN72 434 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 NKX2-4Q9H2Z4 354 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 PRELID3BQ9Y3B1 194 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 H7BYZ3 331 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 SOX18P35713 384 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 ZNF385BQ569K4 471 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 FAM26DQ5JW98 314 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 LANCL3Q6ZV70 420 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 GCNT2Q8N0V5 402 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 PIGTQ969N2 578 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 ARRDC3Q96B67 414 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 RPH3ALQ9UNE2 315 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 LRP5LA4QPB2 252 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 MT-ATP6P00846 226 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 ALOX5APP20292 161 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 DRD1P21728 446 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 FCGR2CP31995 323 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 PHYHD1Q5SRE7 291 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 SEMA4CQ9C0C4 833 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 AUNIPQ9H7T9 357 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 SLC23A1Q9UHI7 598 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 A6NCN8 305 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 SLC6A12P48065 614 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 PRSS36Q5K4E3 855 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 AFMIDQ63HM1 303 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 XAF1Q6GPH4 301 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 S100A7AQ86SG5 101 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 PTOV1Q86YD1 416 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 MRPL38Q96DV4 380 aaKnown RBP15.9■□□□□ 0.14
SYNPO-201ENST00000307662 SMIM19Q96E16 107 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 CDCA3Q99618 268 aaPredicted RBP15.9■□□□□ 0.14
SYNPO-201ENST00000307662 MAST2Q6P0Q8 1798 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 A8MVM7 634 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 EPHA2P29317 976 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 DUSP5Q16690 384 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 RNF151Q2KHN1 245 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 ARHGAP11BQ3KRB8 267 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 FBXO46Q6PJ61 603 aaPredicted RBP15.9■□□□□ 0.14
SYNPO-201ENST00000307662 HIPK2Q9H2X6 1198 aa15.9■□□□□ 0.14
SYNPO-201ENST00000307662 PTRH2Q9Y3E5 179 aaKnown RBP15.9■□□□□ 0.14
SYNPO-201ENST00000307662 BCL2L11O43521 198 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 NID1P14543 1247 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 EPHA4P54764 986 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 GRB2P62993 217 aaKnown RBP15.89■□□□□ 0.13
SYNPO-201ENST00000307662 SNRPNP63162 240 aaKnown RBP15.89■□□□□ 0.13
SYNPO-201ENST00000307662 FAM74A1Q5RGS3 127 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 LINC01465Q8N7H1 131 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 OR13C5Q8NGS8 318 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 ZNF845Q96IR2 970 aaPredicted RBP15.89■□□□□ 0.13
SYNPO-201ENST00000307662 R3HDMLQ9H3Y0 253 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 GNPNAT1Q96EK6 184 aaPredicted RBP15.89■□□□□ 0.13
SYNPO-201ENST00000307662 SLC6A17Q9H1V8 727 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 BANF2Q9H503 90 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 DUSP22Q9NRW4 184 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 CBY1Q9Y3M2 126 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 PLCH1Q4KWH8 1693 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 A0A0B4J203 849 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 GFYI3L273 518 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 PRAMEF4O60810 478 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 MRPL33O75394 65 aaKnown RBP15.89■□□□□ 0.13
SYNPO-201ENST00000307662 KLKB1P03952 638 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 HIST1H1CP16403 213 aaKnown RBP15.89■□□□□ 0.13
SYNPO-201ENST00000307662 ADRA2CP18825 462 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 ACKR3P25106 362 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 SNCAP37840 140 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 DIO1P49895 249 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 RPL27P61353 136 aaKnown RBP15.89■□□□□ 0.13
SYNPO-201ENST00000307662 GRAMD2AQ8IUY3 354 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 MFSD4AQ8N468 514 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 MRPL43Q8N983 215 aaKnown RBP15.89■□□□□ 0.13
SYNPO-201ENST00000307662 KIRREL1Q96J84 757 aa15.89■□□□□ 0.13
SYNPO-201ENST00000307662 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.89■□□□□ 0.13
SYNPO-201ENST00000307662 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms