RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ARL6IP6Q8N6S5 226 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 HSD17B11Q8NBQ5 300 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 OR4K1Q8NGD4 311 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 OR2A7Q96R45 310 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 FCF1Q9Y324 198 aaKnown RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 DOCK5Q9H7D0 1870 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 A8MVM7 634 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 RAB27BO00194 218 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 NDUFB2O95178 105 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 GABRA4P48169 554 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 SNRPEP62304 92 aaKnown RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 NHLH1Q02575 133 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 NHLH2Q02577 135 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 GUCA2AQ02747 115 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 MOGAT2Q3SYC2 334 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 EXOSC6Q5RKV6 272 aaKnown RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 GGNBP1Q5YKI7 109 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 CD300LGQ6UXG3 332 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 OR2M3Q8NG83 312 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 NXF5Q9H1B4 397 aaKnown RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 MTIF3Q9H2K0 278 aaKnown RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 GALNT9Q9HCQ5 603 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 SIRT3Q9NTG7 399 aaPredicted RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 KLRF1Q9NZS2 232 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 PQLC2LA1A4F0 135 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 MPIG6BO95866 241 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 PRRX1P54821 245 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 TAS2R19P59542 299 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 CXADRP78310 365 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 CAP1Q01518 475 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 CD300CQ08708 224 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 ZNF154Q13106 437 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 ZNF805Q5CZA5 627 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 MANEAQ5SRI9 462 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 OR4A47Q6IF82 309 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 LYPD4Q6UWN0 246 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 GCNT2Q8N0V5 402 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 UPRTQ96BW1 309 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 SENP5Q96HI0 755 aaPredicted RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 DGAT2Q96PD7 388 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 PLK3Q9H4B4 646 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 GDF2Q9UK05 429 aaPredicted RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 TBC1D3DA0A087WVF3 549 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 TBC1D3IA0A087WXS9 549 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 LOC105371267A0A1B0GV96 52 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 SLC22A23A1A5C7 686 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 TBC1D3LB9A6J9 549 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 NCR1O76036 304 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 TBC1D3HP0C7X1 549 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 FAM157BP0CG42 384 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 SMIM6P0DI80 62 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 TGFBR1P36897 503 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 ELLP55199 621 aaPredicted RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 FPGSQ05932 587 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 TBC1D3CQ6IPX1 549 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 TBC1D3Q8IZP1 549 aaPredicted RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 OR5M9Q8NGP3 310 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 OR1S2Q8NGQ3 325 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 ZNF845Q96IR2 970 aaPredicted RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 THOC3Q96J01 351 aaKnown RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 STACQ99469 402 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 SARGQ9BW04 601 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 SMDT1Q9H4I9 107 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 C11orf49Q9H6J7 331 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.89□□□□□ -1.47
VPS35-201ENST00000299138 EVA1BQ9NVM1 165 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 GPR52Q9Y2T5 361 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 KPTNQ9Y664 436 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 COLEC10Q9Y6Z7 277 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 LOC285556D6RIA3 1793 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 NDUFB6O95139 128 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 ECI1P42126 302 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 HTR4Q13639 388 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 ZNF528Q3MIS6 628 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 KCTD18Q6PI47 426 aaPredicted RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 KIAA0907Q7Z7F0 614 aaPredicted RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 GATSQ8NAP1 163 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 OR51A7Q8NH64 312 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 ZFPM2Q8WW38 1151 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 RBP7Q96R05 134 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 OR4C12Q96R67 309 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 CNTD2Q9H8S5 307 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 DLL4Q9NR61 685 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 RAB22AQ9UL26 194 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 ZNF256Q9Y2P7 627 aaPredicted RBP5.89□□□□□ -1.47
VPS35-201ENST00000299138 TRBV4-1A0A0J9YWV2 114 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 CRYM-AS1A6NIL9 109 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 SPI1P17947 270 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ACKR3P25106 362 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 GDNFP39905 211 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 HCCSP53701 268 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR5I1Q13606 314 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 FCRLBQ6BAA4 426 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 WDR73Q6P4I2 378 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 TMEM182Q6ZP80 229 aaPredicted RBP5.88□□□□□ -1.47
VPS35-201ENST00000299138 EXD3Q8N9H8 876 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR5AK2Q8NH90 309 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 CMTM2Q8TAZ6 248 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ZNF480Q8WV37 535 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms