RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 OR2L13Q8N349 312 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 LRRC25Q8N386 305 aaPredicted RBP11.9□□□□□ -0.51
NUP54-201ENST00000264883 GALNT16Q8N428 558 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 C12orf76Q8N812 135 aaPredicted RBP11.9□□□□□ -0.51
NUP54-201ENST00000264883 MFSD9Q8NBP5 474 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 DCUN1D4Q92564 292 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 FOXRED1Q96CU9 486 aaPredicted RBP11.9□□□□□ -0.51
NUP54-201ENST00000264883 SAT2Q96F10 170 aaPredicted RBP11.9□□□□□ -0.51
NUP54-201ENST00000264883 AKR1E2Q96JD6 320 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 MYADMQ96S97 322 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 NKX2-4Q9H2Z4 354 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 PRDM13Q9H4Q3 707 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 CYTL1Q9NRR1 136 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 MRPS23Q9Y3D9 190 aaKnown RBP11.9□□□□□ -0.51
NUP54-201ENST00000264883 PCYT1BQ9Y5K3 369 aaPredicted RBP11.9□□□□□ -0.51
NUP54-201ENST00000264883 KPTNQ9Y664 436 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 WNT6Q9Y6F9 365 aa11.9□□□□□ -0.51
NUP54-201ENST00000264883 REV3LO60673 3130 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 TRAV27A0A087WT01 109 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 CXorf65A6NEN9 183 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 C9JQL5 133 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 ZFPL1O95159 310 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 WNT11O96014 354 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 AK1P00568 194 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 AMY2AP04746 511 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 HOXB5P09067 269 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 LIPCP11150 499 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 HOXA5P20719 270 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 NME2P22392 152 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 SLC6A6P31641 620 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 TAS2R19P59542 299 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 GGTLC2Q14390 218 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 CLINT1Q14677 625 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 ZNF239Q16600 458 aaKnown RBP11.89□□□□□ -0.51
NUP54-201ENST00000264883 NKPD1Q17RQ9 610 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 ALG11Q2TAA5 492 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 TMEM205Q6UW68 189 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 WDR88Q6ZMY6 472 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 ANGPTL5Q86XS5 388 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 ETFBKMTQ8IXQ9 262 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 OR51A7Q8NH64 312 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 CDS1Q92903 461 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 BPIFA2Q96DR5 249 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 MALSU1Q96EH3 234 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 LRRC3BQ96PB8 259 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 ZNF350Q9GZX5 532 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 CDV3Q9UKY7 258 aaKnown RBP11.89□□□□□ -0.51
NUP54-201ENST00000264883 C7orf77A4D0Y5 90 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 C1QTNF3-AMACRE9PGA6 284 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 M0QYG6 137 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 IFNA17P01571 189 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 ADH5P11766 374 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 HLA-GP17693 338 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 GSK3AP49840 483 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 EFNB2P52799 333 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 NANOS3P60323 173 aaKnown RBP11.89□□□□□ -0.51
NUP54-201ENST00000264883 ACTBP60709 375 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 ACTG1P63261 375 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 DHCR24Q15392 516 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 OR1Q1Q15612 314 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 AWAT1Q58HT5 328 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 MTSS1LQ765P7 747 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 OR2G2Q8NGZ5 317 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 KIRREL1Q96J84 757 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 SMIM8Q96KF7 97 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 ZNF426Q9BUY5 554 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 HDAC8Q9BY41 377 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 CHST5Q9GZS9 411 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 CSAG2Q9Y5P2 127 aa11.89□□□□□ -0.51
NUP54-201ENST00000264883 EEF1E1-BLOC1S5C9J1V9 151 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 C4orf51C9J302 202 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 AGPAT2O15120 278 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 FBXO24O75426 580 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 LYPD3O95274 346 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 ADH1CP00326 375 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 IFNA2P01563 188 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 LAMP2P13473 410 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 NID1P14543 1247 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 CDX1P47902 265 aaPredicted RBP11.88□□□□□ -0.51
NUP54-201ENST00000264883 SOX2P48431 317 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 METAP1P53582 386 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 SSBP1Q04837 148 aaKnown RBP11.88□□□□□ -0.51
NUP54-201ENST00000264883 HMGN3Q15651 99 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 FAM24BQ8N5W8 94 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 SLC16A11Q8NCK7 471 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 GAL3ST3Q96A11 431 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 RSPRY1Q96DX4 576 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 ELF4Q99607 663 aaPredicted RBP11.88□□□□□ -0.51
NUP54-201ENST00000264883 ZNF559Q9BR84 538 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 PIGQQ9BRB3 760 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 TIMM29Q9BSF4 260 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 FN3KRPQ9HA64 309 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 ICAM5Q9UMF0 924 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 WIF1Q9Y5W5 379 aa11.88□□□□□ -0.51
NUP54-201ENST00000264883 BTBD17A6NE02 478 aa11.87□□□□□ -0.51
NUP54-201ENST00000264883 PSMD9O00233 223 aa11.87□□□□□ -0.51
NUP54-201ENST00000264883 MAS1P04201 325 aa11.87□□□□□ -0.51
NUP54-201ENST00000264883 DCNP07585 359 aaKnown RBP11.87□□□□□ -0.51
NUP54-201ENST00000264883 IFI6P09912 130 aa11.87□□□□□ -0.51
NUP54-201ENST00000264883 HIST1H1BP16401 226 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms