RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 M0R036 132 aa13□□□□□ -0.33
SDC1-201ENST00000254351 RNGTTO60942 597 aaKnown RBP13□□□□□ -0.33
SDC1-201ENST00000254351 UPK3AO75631 287 aa13□□□□□ -0.33
SDC1-201ENST00000254351 ADAP1O75689 374 aa13□□□□□ -0.33
SDC1-201ENST00000254351 ERCC1P07992 297 aaPredicted RBP13□□□□□ -0.33
SDC1-201ENST00000254351 CTXN1P60606 82 aa13□□□□□ -0.33
SDC1-201ENST00000254351 S100A12P80511 92 aa13□□□□□ -0.33
SDC1-201ENST00000254351 SLC9A3R2Q15599 337 aa13□□□□□ -0.33
SDC1-201ENST00000254351 VN1R4Q7Z5H5 301 aa13□□□□□ -0.33
SDC1-201ENST00000254351 OR4K17Q8NGC6 315 aa13□□□□□ -0.33
SDC1-201ENST00000254351 OR2G2Q8NGZ5 317 aa13□□□□□ -0.33
SDC1-201ENST00000254351 LRRC3BQ96PB8 259 aa13□□□□□ -0.33
SDC1-201ENST00000254351 SMIM3Q9BZL3 60 aa13□□□□□ -0.33
SDC1-201ENST00000254351 SYT4Q9H2B2 425 aa13□□□□□ -0.33
SDC1-201ENST00000254351 NUP210Q8TEM1 1887 aaPredicted RBP13□□□□□ -0.33
SDC1-201ENST00000254351 ITGB2P05107 769 aa13□□□□□ -0.33
SDC1-201ENST00000254351 RCC1P18754 421 aaPredicted RBP13□□□□□ -0.33
SDC1-201ENST00000254351 SERPINF1P36955 418 aa13□□□□□ -0.33
SDC1-201ENST00000254351 MAP3K8P41279 467 aa13□□□□□ -0.33
SDC1-201ENST00000254351 C5orf46Q6UWT4 87 aa13□□□□□ -0.33
SDC1-201ENST00000254351 CRIPAKQ8N1N5 446 aa13□□□□□ -0.33
SDC1-201ENST00000254351 PRSS35Q8N3Z0 413 aa13□□□□□ -0.33
SDC1-201ENST00000254351 CSNK1A1LQ8N752 337 aa13□□□□□ -0.33
SDC1-201ENST00000254351 OR52R1Q8NGF1 315 aa13□□□□□ -0.33
SDC1-201ENST00000254351 EDARADDQ8WWZ3 215 aa13□□□□□ -0.33
SDC1-201ENST00000254351 FOXRED1Q96CU9 486 aaPredicted RBP13□□□□□ -0.33
SDC1-201ENST00000254351 MOGAT1Q96PD6 335 aa13□□□□□ -0.33
SDC1-201ENST00000254351 UPB1Q9UBR1 384 aa13□□□□□ -0.33
SDC1-201ENST00000254351 ICAM5Q9UMF0 924 aa13□□□□□ -0.33
SDC1-201ENST00000254351 SLC27A6Q9Y2P4 619 aa13□□□□□ -0.33
SDC1-201ENST00000254351 ENTPD2Q9Y5L3 495 aa13□□□□□ -0.33
SDC1-201ENST00000254351 EIF1BO60739 113 aaKnown RBP12.99□□□□□ -0.33
SDC1-201ENST00000254351 ARG1P05089 322 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 TACSTD2P09758 323 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 ZNF44P15621 663 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 ABCD3P28288 659 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 P2RY2P41231 377 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 EIF1P41567 113 aaKnown RBP12.99□□□□□ -0.33
SDC1-201ENST00000254351 TAS2R19P59542 299 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 CORO6Q6QEF8 472 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 LURAP1LQ8IV03 231 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 OR13C8Q8NGS7 320 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 LCN9Q8WX39 176 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 OR8D1Q8WZ84 308 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 MAP3K3Q99759 626 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 CHMP1AQ9HD42 196 aaPredicted RBP12.99□□□□□ -0.33
SDC1-201ENST00000254351 PLXNA2O75051 1894 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 SPAG17Q6Q759 2223 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 SDK1Q7Z5N4 2213 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 A0A1W2PPC1 479 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 OTOL1A6NHN0 477 aaPredicted RBP12.99□□□□□ -0.33
SDC1-201ENST00000254351 CDC40O60508 579 aaKnown RBP eCLIP12.99□□□□□ -0.334e-6■■■■□ 23.1
SDC1-201ENST00000254351 H2AFB1P0C5Y9 115 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 MECP2P51608 486 aaKnown RBP12.99□□□□□ -0.33
SDC1-201ENST00000254351 NR0B1P51843 470 aaKnown RBP12.99□□□□□ -0.33
SDC1-201ENST00000254351 S100A10P60903 97 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 EBPQ15125 230 aaKnown RBP12.99□□□□□ -0.33
SDC1-201ENST00000254351 DHCR24Q15392 516 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 MEP1BQ16820 701 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 WDR38Q5JTN6 314 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 CNKSR3Q6P9H4 555 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 MARCH3Q86UD3 253 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 BAP18Q8IXM2 172 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 TMIEQ8NEW7 156 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 GPR148Q8TDV2 347 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 PITHD1Q9GZP4 211 aaPredicted RBP12.99□□□□□ -0.33
SDC1-201ENST00000254351 TRIOO75962 3097 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 METTL21EPA6NDL7 271 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 C17orf51A8MQB3 221 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 MED6O75586 246 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 EML2O95834 649 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 TIMP1P01033 207 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 ERGP11308 486 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 MAPK3P27361 379 aaPredicted RBP12.99□□□□□ -0.33
SDC1-201ENST00000254351 DEFB103AP81534 67 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 ERV3-1Q14264 604 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 PDGFRLQ15198 375 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 FAM76BQ5HYJ3 339 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 TTLL10Q6ZVT0 673 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 ZNF615Q8N8J6 731 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 VWCEQ96DN2 955 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 IP6K3Q96PC2 410 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 TAS2R4Q9NYW5 299 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 KLK13Q9UKR3 277 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 PCOLCE2Q9UKZ9 415 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 MRPS33Q9Y291 106 aaKnown RBP12.99□□□□□ -0.33
SDC1-201ENST00000254351 DTX4Q9Y2E6 619 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 PCDHGA1Q9Y5H4 931 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 ETV7Q9Y603 341 aa12.99□□□□□ -0.33
SDC1-201ENST00000254351 REV3LO60673 3130 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 OR10H2O60403 315 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 IGKV1D-16P01601 117 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 PMP2P02689 132 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 THBS1P07996 1170 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 ABOP16442 354 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 TLX1P31314 330 aaPredicted RBP12.98□□□□□ -0.33
SDC1-201ENST00000254351 ACAA2P42765 397 aaKnown RBP12.98□□□□□ -0.33
SDC1-201ENST00000254351 MPPED2Q15777 294 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 LINC01590Q5TEZ4 76 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 ZNF584Q8IVC4 421 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms