RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141		F6X3S4	739 aa		13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	ECE2	O60344	883 aa		13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	HSPA1A	P0DMV8	641 aa	Known RBP	13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	HSPA1B	P0DMV9	641 aa	Known RBP	13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	VEGFB	P49765	207 aa		13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	HIRA	P54198	1017 aa	Predicted RBP	13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	IFFO2	Q5TF58	517 aa		13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	TTLL11	Q8NHH1	800 aa		13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	TRPM4	Q8TD43	1214 aa		13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	ABT1	Q9ULW3	272 aa	Known RBP	13.16	□□□□□ -0.3
SCN1A-222	ENST00000642141	GRM1	Q13255	1194 aa		13.15	□□□□□ -0.3
SCN1A-222	ENST00000642141	GCKR	Q14397	625 aa		13.15	□□□□□ -0.3
SCN1A-222	ENST00000642141	RBM26	Q5T8P6	1007 aa	Known RBP	13.15	□□□□□ -0.3
SCN1A-222	ENST00000642141	DLK2	Q6UY11	383 aa		13.15	□□□□□ -0.3
SCN1A-222	ENST00000642141	SAMD7	Q7Z3H4	446 aa		13.15	□□□□□ -0.3
SCN1A-222	ENST00000642141	MICALL2	Q8IY33	904 aa		13.15	□□□□□ -0.3
SCN1A-222	ENST00000642141	DNAAF4	Q8WXU2	420 aa		13.15	□□□□□ -0.3
SCN1A-222	ENST00000642141	EYA3	Q99504	573 aa		13.15	□□□□□ -0.3
SCN1A-222	ENST00000642141	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.15	□□□□□ -0.3
SCN1A-222	ENST00000642141	GGA1	Q9UJY5	639 aa		13.15	□□□□□ -0.3
SCN1A-222	ENST00000642141	CDHR2	Q9BYE9	1310 aa		13.14	□□□□□ -0.31
SCN1A-222	ENST00000642141		H7C1D1	291 aa		13.14	□□□□□ -0.31
SCN1A-222	ENST00000642141		H7C1W4	665 aa		13.14	□□□□□ -0.31
SCN1A-222	ENST00000642141	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.14	□□□□□ -0.31
SCN1A-222	ENST00000642141	NCBP3	Q53F19	620 aa	Known RBP	13.14	□□□□□ -0.31
SCN1A-222	ENST00000642141	MYH16	Q9H6N6	1097 aa		13.14	□□□□□ -0.31
SCN1A-222	ENST00000642141	CNTNAP1	P78357	1384 aa		13.14	□□□□□ -0.31
SCN1A-222	ENST00000642141	ADAMTSL1	Q8N6G6	1762 aa		13.14	□□□□□ -0.31
SCN1A-222	ENST00000642141	RTL9	Q8NET4	1388 aa		13.13	□□□□□ -0.31
SCN1A-222	ENST00000642141	EGFR	P00533	1210 aa		13.13	□□□□□ -0.31
SCN1A-222	ENST00000642141	DEFB115	Q30KQ5	88 aa		13.13	□□□□□ -0.31
SCN1A-222	ENST00000642141	CST9	Q5W186	159 aa		13.13	□□□□□ -0.31
SCN1A-222	ENST00000642141	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.13	□□□□□ -0.31
SCN1A-222	ENST00000642141	CDC5L	Q99459	802 aa	Known RBP	13.13	□□□□□ -0.31
SCN1A-222	ENST00000642141	ZNF408	Q9H9D4	720 aa		13.13	□□□□□ -0.31
SCN1A-222	ENST00000642141	PODXL2	Q9NZ53	605 aa		13.13	□□□□□ -0.31
SCN1A-222	ENST00000642141	LRRC37A	A6NMS7	1700 aa		13.13	□□□□□ -0.31
SCN1A-222	ENST00000642141	FAM161A	Q3B820	660 aa		13.12	□□□□□ -0.31
SCN1A-222	ENST00000642141	USP48	Q86UV5	1035 aa		13.12	□□□□□ -0.31
SCN1A-222	ENST00000642141	LINS1	Q8NG48	757 aa		13.12	□□□□□ -0.31
SCN1A-222	ENST00000642141	MINPP1	Q9UNW1	487 aa		13.12	□□□□□ -0.31
SCN1A-222	ENST00000642141	CELF2	O95319	508 aa	Known RBP	13.11	□□□□□ -0.31
SCN1A-222	ENST00000642141	ITGA6	P23229	1130 aa		13.11	□□□□□ -0.31
SCN1A-222	ENST00000642141	CASP7	P55210	303 aa		13.11	□□□□□ -0.31
SCN1A-222	ENST00000642141	SLC4A10	Q6U841	1118 aa		13.11	□□□□□ -0.31
SCN1A-222	ENST00000642141	CHMP3	Q9Y3E7	222 aa		13.11	□□□□□ -0.31
SCN1A-222	ENST00000642141	XDH	P47989	1333 aa		13.11	□□□□□ -0.31
SCN1A-222	ENST00000642141	ATP2B4	P23634	1241 aa		13.1	□□□□□ -0.31
SCN1A-222	ENST00000642141	FBXW7	Q969H0	707 aa		13.1	□□□□□ -0.31
SCN1A-222	ENST00000642141	BSDC1	Q9NW68	430 aa	Predicted RBP	13.1	□□□□□ -0.31
SCN1A-222	ENST00000642141	RASSF10	A6NK89	507 aa		13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	FOXN1	O15353	648 aa		13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	CAPN15	O75808	1086 aa		13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	VIL1	P09327	827 aa	Known RBP	13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	IGHMBP2	P38935	993 aa	Known RBP	13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	BEND3	Q5T5X7	828 aa		13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	CYP4F22	Q6NT55	531 aa		13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	HELB	Q8NG08	1087 aa	Predicted RBP	13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	DPF2	Q92785	391 aa		13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	MPHOSPH8	Q99549	860 aa		13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	MXD3	Q9BW11	206 aa		13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	PGAP2	Q9UHJ9	254 aa		13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	ASTN2	O75129	1339 aa	Predicted RBP	13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	WDR33	Q9C0J8	1336 aa	Known RBP	13.09	□□□□□ -0.31
SCN1A-222	ENST00000642141	SNAP23	O00161	211 aa		13.08	□□□□□ -0.32
SCN1A-222	ENST00000642141	CSF1R	P07333	972 aa		13.08	□□□□□ -0.32
SCN1A-222	ENST00000642141	KLRK1	P26718	216 aa		13.08	□□□□□ -0.32
SCN1A-222	ENST00000642141	CCT4	P50991	539 aa	Known RBP	13.08	□□□□□ -0.32
SCN1A-222	ENST00000642141	FOXO4	P98177	505 aa		13.08	□□□□□ -0.32
SCN1A-222	ENST00000642141	EPHA10	Q5JZY3	1008 aa		13.08	□□□□□ -0.32
SCN1A-222	ENST00000642141	CDC37L1	Q7L3B6	337 aa		13.08	□□□□□ -0.32
SCN1A-222	ENST00000642141	TXNRD3	Q86VQ6	643 aa		13.08	□□□□□ -0.32
SCN1A-222	ENST00000642141	CAPNS2	Q96L46	248 aa		13.08	□□□□□ -0.32
SCN1A-222	ENST00000642141	SCAF8	Q9UPN6	1271 aa	Known RBP	13.08	□□□□□ -0.32
SCN1A-222	ENST00000642141	ADM5	C9JUS6	153 aa		13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	TAF5L	O75529	589 aa		13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	RPS12	P25398	132 aa	Known RBP	13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	KIF4B	Q2VIQ3	1234 aa		13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	LMBR1L	Q6UX01	489 aa		13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	KRT26	Q7Z3Y9	468 aa		13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	TNS4	Q8IZW8	715 aa		13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	ZC3H15	Q8WU90	426 aa	Known RBP	13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	CDCA7L	Q96GN5	454 aa		13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	ZNF594	Q96JF6	807 aa	Predicted RBP	13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	PLA2G12B	Q9BX93	195 aa		13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	ZNF521	Q96K83	1311 aa		13.07	□□□□□ -0.32
SCN1A-222	ENST00000642141	SPEF2	Q9C093	1822 aa		13.06	□□□□□ -0.32
SCN1A-222	ENST00000642141	ANKRD18B	A2A2Z9	1011 aa		13.06	□□□□□ -0.32
SCN1A-222	ENST00000642141	USP17L3	A6NCW0	530 aa		13.06	□□□□□ -0.32
SCN1A-222	ENST00000642141	USP17L4	A6NCW7	530 aa		13.06	□□□□□ -0.32
SCN1A-222	ENST00000642141	PLIN1	O60240	522 aa		13.06	□□□□□ -0.32
SCN1A-222	ENST00000642141	AOC2	O75106	756 aa		13.06	□□□□□ -0.32
SCN1A-222	ENST00000642141	KCNJ4	P48050	445 aa		13.06	□□□□□ -0.32
SCN1A-222	ENST00000642141	IFIT5	Q13325	482 aa	Known RBP	13.06	□□□□□ -0.32
SCN1A-222	ENST00000642141	USP17L1	Q7RTZ2	530 aa		13.06	□□□□□ -0.32
SCN1A-222	ENST00000642141	AIDA	Q96BJ3	306 aa		13.06	□□□□□ -0.32
SCN1A-222	ENST00000642141	DCPS	Q96C86	337 aa	Known RBP	13.06	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 652.8 ms