RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 EYA3Q99504 573 aa17.85■□□□□ 0.45
LINC00339-211ENST00000641009 KCNQ5Q9NR82 932 aa17.85■□□□□ 0.45
LINC00339-211ENST00000641009 CNOT7Q9UIV1 285 aaKnown RBP17.85■□□□□ 0.45
LINC00339-211ENST00000641009 ABT1Q9ULW3 272 aaKnown RBP17.85■□□□□ 0.45
LINC00339-211ENST00000641009 RASSF10A6NK89 507 aa17.84■□□□□ 0.45
LINC00339-211ENST00000641009 NEURL1BA8MQ27 555 aa17.84■□□□□ 0.45
LINC00339-211ENST00000641009 UFL1O94874 794 aa17.84■□□□□ 0.45
LINC00339-211ENST00000641009 CTSWP56202 376 aa17.84■□□□□ 0.45
LINC00339-211ENST00000641009 TRPM4Q8TD43 1214 aa17.84■□□□□ 0.45
LINC00339-211ENST00000641009 PODXL2Q9NZ53 605 aa17.84■□□□□ 0.45
LINC00339-211ENST00000641009 ANKIB1Q9P2G1 1089 aa17.84■□□□□ 0.45
LINC00339-211ENST00000641009 RTL9Q8NET4 1388 aa17.83■□□□□ 0.45
LINC00339-211ENST00000641009 HIRAP54198 1017 aaPredicted RBP17.83■□□□□ 0.45
LINC00339-211ENST00000641009 EXOSC9Q06265 439 aaKnown RBP17.83■□□□□ 0.45
LINC00339-211ENST00000641009 FLIIQ13045 1269 aa17.83■□□□□ 0.45
LINC00339-211ENST00000641009 DEFB115Q30KQ5 88 aa17.83■□□□□ 0.45
LINC00339-211ENST00000641009 ANKRD18AQ8IVF6 992 aa17.83■□□□□ 0.45
LINC00339-211ENST00000641009 MICALL2Q8IY33 904 aa17.83■□□□□ 0.45
LINC00339-211ENST00000641009 FAM9BQ8IZU0 186 aa17.83■□□□□ 0.45
LINC00339-211ENST00000641009 VAMP4O75379 141 aa17.82■□□□□ 0.44
LINC00339-211ENST00000641009 FKBP5Q13451 457 aaPredicted RBP17.82■□□□□ 0.44
LINC00339-211ENST00000641009 CST9Q5W186 159 aa17.82■□□□□ 0.44
LINC00339-211ENST00000641009 TTLL11Q8NHH1 800 aa17.82■□□□□ 0.44
LINC00339-211ENST00000641009 ZC3H12CQ9C0D7 883 aaKnown RBP17.82■□□□□ 0.44
LINC00339-211ENST00000641009 SPINK5Q9NQ38 1064 aaPredicted RBP17.82■□□□□ 0.44
LINC00339-211ENST00000641009 GGA1Q9UJY5 639 aa17.82■□□□□ 0.44
LINC00339-211ENST00000641009 H7C1D1 291 aa17.82■□□□□ 0.44
LINC00339-211ENST00000641009 UBE3BQ7Z3V4 1068 aa17.82■□□□□ 0.44
LINC00339-211ENST00000641009 GLIS2Q9BZE0 524 aaPredicted RBP17.82■□□□□ 0.44
LINC00339-211ENST00000641009 GREM2Q9H772 168 aa17.82■□□□□ 0.44
LINC00339-211ENST00000641009 PGAP2Q9UHJ9 254 aa17.82■□□□□ 0.44
LINC00339-211ENST00000641009 ZNF646O15015 1829 aaPredicted RBP17.81■□□□□ 0.44
LINC00339-211ENST00000641009 DPF2Q92785 391 aa17.81■□□□□ 0.44
LINC00339-211ENST00000641009 THSD7BQ9C0I4 1608 aa17.8■□□□□ 0.44
LINC00339-211ENST00000641009 XDHP47989 1333 aa17.8■□□□□ 0.44
LINC00339-211ENST00000641009 H7C1W4 665 aa17.8■□□□□ 0.44
LINC00339-211ENST00000641009 FOXN1O15353 648 aa17.8■□□□□ 0.44
LINC00339-211ENST00000641009 GCKRQ14397 625 aa17.8■□□□□ 0.44
LINC00339-211ENST00000641009 SAMD7Q7Z3H4 446 aa17.8■□□□□ 0.44
LINC00339-211ENST00000641009 DNAAF4Q8WXU2 420 aa17.8■□□□□ 0.44
LINC00339-211ENST00000641009 CDC5LQ99459 802 aaKnown RBP17.8■□□□□ 0.44
LINC00339-211ENST00000641009 A0A1B0GUL6 1792 aa17.8■□□□□ 0.44
LINC00339-211ENST00000641009 WDR33Q9C0J8 1336 aaKnown RBP17.79■□□□□ 0.44
LINC00339-211ENST00000641009 WTIPA6NIX2 430 aaPredicted RBP17.79■□□□□ 0.44
LINC00339-211ENST00000641009 G3V3G9 751 aa17.79■□□□□ 0.44
LINC00339-211ENST00000641009 EGFRP00533 1210 aa17.79■□□□□ 0.44
LINC00339-211ENST00000641009 TBC1D10BQ4KMP7 808 aaPredicted RBP17.79■□□□□ 0.44
LINC00339-211ENST00000641009 DCAF8Q5TAQ9 597 aa17.79■□□□□ 0.44
LINC00339-211ENST00000641009 ZC3H15Q8WU90 426 aaKnown RBP17.79■□□□□ 0.44
LINC00339-211ENST00000641009 CELF2O95319 508 aaKnown RBP17.78■□□□□ 0.44
LINC00339-211ENST00000641009 PAXIP1Q6ZW49 1069 aaPredicted RBP17.78■□□□□ 0.44
LINC00339-211ENST00000641009 TNS4Q8IZW8 715 aa17.78■□□□□ 0.44
LINC00339-211ENST00000641009 VIL1P09327 827 aaKnown RBP17.77■□□□□ 0.44
LINC00339-211ENST00000641009 ATP2B4P23634 1241 aa17.77■□□□□ 0.44
LINC00339-211ENST00000641009 RPS12P25398 132 aaKnown RBP17.77■□□□□ 0.44
LINC00339-211ENST00000641009 CASP7P55210 303 aa17.77■□□□□ 0.44
LINC00339-211ENST00000641009 RBM26Q5T8P6 1007 aaKnown RBP17.77■□□□□ 0.44
LINC00339-211ENST00000641009 CYP4F22Q6NT55 531 aa17.77■□□□□ 0.44
LINC00339-211ENST00000641009 LINS1Q8NG48 757 aa17.77■□□□□ 0.44
LINC00339-211ENST00000641009 MYH16Q9H6N6 1097 aa17.77■□□□□ 0.44
LINC00339-211ENST00000641009 ZNF408Q9H9D4 720 aa17.77■□□□□ 0.44
LINC00339-211ENST00000641009 BSDC1Q9NW68 430 aaPredicted RBP17.77■□□□□ 0.44
LINC00339-211ENST00000641009 MINPP1Q9UNW1 487 aa17.77■□□□□ 0.44
LINC00339-211ENST00000641009 TLL2Q9Y6L7 1015 aa17.77■□□□□ 0.44
LINC00339-211ENST00000641009 GRM1Q13255 1194 aa17.76■□□□□ 0.43
LINC00339-211ENST00000641009 CDC37L1Q7L3B6 337 aa17.76■□□□□ 0.43
LINC00339-211ENST00000641009 AIDAQ96BJ3 306 aa17.76■□□□□ 0.43
LINC00339-211ENST00000641009 CAPNS2Q96L46 248 aa17.76■□□□□ 0.43
LINC00339-211ENST00000641009 WBP1LQ9NX94 342 aa17.76■□□□□ 0.43
LINC00339-211ENST00000641009 F6X3S4 739 aa17.75■□□□□ 0.43
LINC00339-211ENST00000641009 FAM161AQ3B820 660 aa17.75■□□□□ 0.43
LINC00339-211ENST00000641009 DLK2Q6UY11 383 aa17.75■□□□□ 0.43
LINC00339-211ENST00000641009 USP48Q86UV5 1035 aa17.75■□□□□ 0.43
LINC00339-211ENST00000641009 PLA2G12BQ9BX93 195 aa17.75■□□□□ 0.43
LINC00339-211ENST00000641009 ITGA6P23229 1130 aa17.75■□□□□ 0.43
LINC00339-211ENST00000641009 SAPCD2Q86UD0 394 aa17.75■□□□□ 0.43
LINC00339-211ENST00000641009 MED23Q9ULK4 1368 aa17.74■□□□□ 0.43
LINC00339-211ENST00000641009 IGHMBP2P38935 993 aaKnown RBP17.74■□□□□ 0.43
LINC00339-211ENST00000641009 CCT4P50991 539 aaKnown RBP17.74■□□□□ 0.43
LINC00339-211ENST00000641009 RSBN1LQ6PCB5 846 aaPredicted RBP17.74■□□□□ 0.43
LINC00339-211ENST00000641009 CSF1RP07333 972 aa17.73■□□□□ 0.43
LINC00339-211ENST00000641009 ECE1P42892 770 aa17.73■□□□□ 0.43
LINC00339-211ENST00000641009 CTCFP49711 727 aaPredicted RBP17.73■□□□□ 0.43
LINC00339-211ENST00000641009 KIF4BQ2VIQ3 1234 aa17.73■□□□□ 0.43
LINC00339-211ENST00000641009 ZNF609O15014 1411 aa17.73■□□□□ 0.43
LINC00339-211ENST00000641009 CAPN15O75808 1086 aa17.72■□□□□ 0.43
LINC00339-211ENST00000641009 MAP2K1Q02750 393 aaPredicted RBP17.72■□□□□ 0.43
LINC00339-211ENST00000641009 BEND3Q5T5X7 828 aa17.72■□□□□ 0.43
LINC00339-211ENST00000641009 KRT26Q7Z3Y9 468 aa17.72■□□□□ 0.43
LINC00339-211ENST00000641009 ASTN2O75129 1339 aaPredicted RBP17.72■□□□□ 0.43
LINC00339-211ENST00000641009 ZNF521Q96K83 1311 aa17.72■□□□□ 0.43
LINC00339-211ENST00000641009 ADM5C9JUS6 153 aa17.71■□□□□ 0.43
LINC00339-211ENST00000641009 AOC2O75106 756 aa17.71■□□□□ 0.43
LINC00339-211ENST00000641009 PODNQ7Z5L7 613 aa17.71■□□□□ 0.43
LINC00339-211ENST00000641009 TXNRD3Q86VQ6 643 aa17.71■□□□□ 0.43
LINC00339-211ENST00000641009 AGBL3Q8NEM8 1001 aa17.71■□□□□ 0.43
LINC00339-211ENST00000641009 DCPSQ96C86 337 aaKnown RBP17.71■□□□□ 0.43
LINC00339-211ENST00000641009 MPHOSPH8Q99549 860 aa17.71■□□□□ 0.43
LINC00339-211ENST00000641009 USP17L3A6NCW0 530 aa17.7■□□□□ 0.42
LINC00339-211ENST00000641009 USP17L4A6NCW7 530 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms