RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 RTL9Q8NET4 1388 aa17.51■□□□□ 0.39
PNKP-228ENST00000637325 EPS15P42566 896 aa17.5■□□□□ 0.39
PNKP-228ENST00000637325 SCNN1DP51172 638 aa17.5■□□□□ 0.39
PNKP-228ENST00000637325 CASP7P55210 303 aa17.5■□□□□ 0.39
PNKP-228ENST00000637325 DOK7Q18PE1 504 aa17.5■□□□□ 0.39
PNKP-228ENST00000637325 MRPL50Q8N5N7 158 aaKnown RBP17.5■□□□□ 0.39
PNKP-228ENST00000637325 GPR101Q96P66 508 aaPredicted RBP17.5■□□□□ 0.39
PNKP-228ENST00000637325 C9orf78Q9NZ63 289 aaPredicted RBP17.5■□□□□ 0.39
PNKP-228ENST00000637325 CHMP3Q9Y3E7 222 aa17.5■□□□□ 0.39
PNKP-228ENST00000637325 XDHP47989 1333 aa17.49■□□□□ 0.39
PNKP-228ENST00000637325 ECE2O60344 883 aa17.49■□□□□ 0.39
PNKP-228ENST00000637325 ALDH1L1O75891 902 aa17.49■□□□□ 0.39
PNKP-228ENST00000637325 ITGA6P23229 1130 aa17.49■□□□□ 0.39
PNKP-228ENST00000637325 ATP2B4P23634 1241 aa17.49■□□□□ 0.39
PNKP-228ENST00000637325 GMPSP49915 693 aaPredicted RBP17.49■□□□□ 0.39
PNKP-228ENST00000637325 MPHOSPH8Q99549 860 aa17.49■□□□□ 0.39
PNKP-228ENST00000637325 SRCIN1Q9C0H9 1055 aa17.49■□□□□ 0.39
PNKP-228ENST00000637325 BSDC1Q9NW68 430 aaPredicted RBP17.49■□□□□ 0.39
PNKP-228ENST00000637325 POLR2AP24928 1970 aaKnown RBP17.48■□□□□ 0.39
PNKP-228ENST00000637325 YDJCA8MPS7 323 aa17.48■□□□□ 0.39
PNKP-228ENST00000637325 GRM8O00222 908 aa17.48■□□□□ 0.39
PNKP-228ENST00000637325 CSF1RP07333 972 aa17.48■□□□□ 0.39
PNKP-228ENST00000637325 FAM161AQ3B820 660 aa17.48■□□□□ 0.39
PNKP-228ENST00000637325 MIER1Q8N108 512 aa17.48■□□□□ 0.39
PNKP-228ENST00000637325 SSH1Q8WYL5 1049 aa17.48■□□□□ 0.39
PNKP-228ENST00000637325 GPRC5DQ9NZD1 345 aa17.48■□□□□ 0.39
PNKP-228ENST00000637325 ADAMTSL1Q8N6G6 1762 aa17.48■□□□□ 0.39
PNKP-228ENST00000637325 SCN9AQ15858 1988 aa17.48■□□□□ 0.39
PNKP-228ENST00000637325 ANKRD18BA2A2Z9 1011 aa17.47■□□□□ 0.39
PNKP-228ENST00000637325 USP50Q70EL3 339 aaPredicted RBP17.47■□□□□ 0.39
PNKP-228ENST00000637325 DNAJC5GQ8N7S2 189 aa17.47■□□□□ 0.39
PNKP-228ENST00000637325 ADARB2Q9NS39 739 aaKnown RBP17.47■□□□□ 0.39
PNKP-228ENST00000637325 MINPP1Q9UNW1 487 aa17.47■□□□□ 0.39
PNKP-228ENST00000637325 PTPRCP08575 1304 aa17.47■□□□□ 0.39
PNKP-228ENST00000637325 TRPM7Q96QT4 1865 aa17.46■□□□□ 0.39
PNKP-228ENST00000637325 IFIT5Q13325 482 aaKnown RBP17.46■□□□□ 0.39
PNKP-228ENST00000637325 ALDH1L2Q3SY69 923 aa17.46■□□□□ 0.39
PNKP-228ENST00000637325 MAP1SQ66K74 1059 aaPredicted RBP17.46■□□□□ 0.39
PNKP-228ENST00000637325 TRMT2AQ8IZ69 625 aaKnown RBP17.46■□□□□ 0.39
PNKP-228ENST00000637325 CNTROBQ8N137 903 aa17.46■□□□□ 0.39
PNKP-228ENST00000637325 SMC4Q9NTJ3 1288 aa17.46■□□□□ 0.39
PNKP-228ENST00000637325 PSME4Q14997 1843 aa17.45■□□□□ 0.38
PNKP-228ENST00000637325 H7C1D1 291 aa17.45■□□□□ 0.38
PNKP-228ENST00000637325 PSMD14O00487 310 aa17.45■□□□□ 0.38
PNKP-228ENST00000637325 FOXO4P98177 505 aa17.45■□□□□ 0.38
PNKP-228ENST00000637325 KLRG1Q96E93 195 aa17.45■□□□□ 0.38
PNKP-228ENST00000637325 ANKRD2Q9GZV1 360 aa17.45■□□□□ 0.38
PNKP-228ENST00000637325 CNOT7Q9UIV1 285 aaKnown RBP17.45■□□□□ 0.38
PNKP-228ENST00000637325 CCT4P50991 539 aaKnown RBP17.44■□□□□ 0.38
PNKP-228ENST00000637325 TAF7LQ5H9L4 462 aa17.44■□□□□ 0.38
PNKP-228ENST00000637325 LMBR1LQ6UX01 489 aa17.44■□□□□ 0.38
PNKP-228ENST00000637325 ZBTB12Q9Y330 459 aaPredicted RBP17.44■□□□□ 0.38
PNKP-228ENST00000637325 ITGBL1O95965 494 aaPredicted RBP17.43■□□□□ 0.38
PNKP-228ENST00000637325 CT47B1P0C2W7 299 aaPredicted RBP17.43■□□□□ 0.38
PNKP-228ENST00000637325 KCNJ4P48050 445 aa17.43■□□□□ 0.38
PNKP-228ENST00000637325 CCDC57Q2TAC2 916 aa17.43■□□□□ 0.38
PNKP-228ENST00000637325 KCNQ5Q9NR82 932 aa17.43■□□□□ 0.38
PNKP-228ENST00000637325 CREBZFQ9NS37 354 aa17.43■□□□□ 0.38
PNKP-228ENST00000637325 LEMD3Q9Y2U8 911 aa17.43■□□□□ 0.38
PNKP-228ENST00000637325 PASKQ96RG2 1323 aa17.43■□□□□ 0.38
PNKP-228ENST00000637325 RPS12P25398 132 aaKnown RBP17.42■□□□□ 0.38
PNKP-228ENST00000637325 MICALL2Q8IY33 904 aa17.42■□□□□ 0.38
PNKP-228ENST00000637325 DPF2Q92785 391 aa17.42■□□□□ 0.38
PNKP-228ENST00000637325 A0A1B0GUL6 1792 aa17.41■□□□□ 0.38
PNKP-228ENST00000637325 TMEM88BA6NKF7 163 aa17.41■□□□□ 0.38
PNKP-228ENST00000637325 EPHA10Q5JZY3 1008 aa17.41■□□□□ 0.38
PNKP-228ENST00000637325 ZNF804BA4D1E1 1349 aa17.41■□□□□ 0.38
PNKP-228ENST00000637325 MED23Q9ULK4 1368 aa17.4■□□□□ 0.38
PNKP-228ENST00000637325 VIL1P09327 827 aaKnown RBP17.4■□□□□ 0.38
PNKP-228ENST00000637325 NBPF7P0C2Y1 421 aaPredicted RBP17.4■□□□□ 0.38
PNKP-228ENST00000637325 CHRNDQ07001 517 aa17.4■□□□□ 0.38
PNKP-228ENST00000637325 PODNQ7Z5L7 613 aa17.4■□□□□ 0.38
PNKP-228ENST00000637325 SUCLG2Q96I99 432 aa17.4■□□□□ 0.38
PNKP-228ENST00000637325 SHTN1A0MZ66 631 aa17.39■□□□□ 0.37
PNKP-228ENST00000637325 WTIPA6NIX2 430 aaPredicted RBP17.39■□□□□ 0.37
PNKP-228ENST00000637325 HNRNPUQ00839 825 aaKnown RBP eCLIP17.39■□□□□ 0.37
PNKP-228ENST00000637325 RBM26Q5T8P6 1007 aaKnown RBP17.39■□□□□ 0.37
PNKP-228ENST00000637325 TRPM4Q8TD43 1214 aa17.39■□□□□ 0.37
PNKP-228ENST00000637325 FBXW7Q969H0 707 aa17.39■□□□□ 0.37
PNKP-228ENST00000637325 ZNF594Q96JF6 807 aaPredicted RBP17.39■□□□□ 0.37
PNKP-228ENST00000637325 CNNM1Q9NRU3 951 aa17.39■□□□□ 0.37
PNKP-228ENST00000637325 USP17L3A6NCW0 530 aa17.38■□□□□ 0.37
PNKP-228ENST00000637325 USP17L4A6NCW7 530 aa17.38■□□□□ 0.37
PNKP-228ENST00000637325 RSBN1LQ6PCB5 846 aaPredicted RBP17.38■□□□□ 0.37
PNKP-228ENST00000637325 LDHAL6AQ6ZMR3 332 aa17.38■□□□□ 0.37
PNKP-228ENST00000637325 USP17L1Q7RTZ2 530 aa17.38■□□□□ 0.37
PNKP-228ENST00000637325 SAMD7Q7Z3H4 446 aa17.38■□□□□ 0.37
PNKP-228ENST00000637325 ZC3H15Q8WU90 426 aaKnown RBP17.38■□□□□ 0.37
PNKP-228ENST00000637325 MKRN1Q9UHC7 482 aaKnown RBP17.38■□□□□ 0.37
PNKP-228ENST00000637325 NOB1Q9ULX3 412 aaKnown RBP17.38■□□□□ 0.37
PNKP-228ENST00000637325 UTYO14607 1347 aa17.38■□□□□ 0.37
PNKP-228ENST00000637325 PLIN1O60240 522 aa17.37■□□□□ 0.37
PNKP-228ENST00000637325 TAF5LO75529 589 aa17.37■□□□□ 0.37
PNKP-228ENST00000637325 HIRAP54198 1017 aaPredicted RBP17.37■□□□□ 0.37
PNKP-228ENST00000637325 TBC1D10BQ4KMP7 808 aaPredicted RBP17.37■□□□□ 0.37
PNKP-228ENST00000637325 AGBL3Q8NEM8 1001 aa17.37■□□□□ 0.37
PNKP-228ENST00000637325 HELBQ8NG08 1087 aaPredicted RBP17.37■□□□□ 0.37
PNKP-228ENST00000637325 API5Q9BZZ5 524 aaKnown RBP17.37■□□□□ 0.37
PNKP-228ENST00000637325 COA1Q9GZY4 146 aa17.37■□□□□ 0.37
PNKP-228ENST00000637325 JMYQ8N9B5 988 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms