RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ATP2B3Q16720 1220 aa20.48■□□□□ 0.87
CLN3-252ENST00000636907 CCDC24Q8N4L8 307 aa20.48■□□□□ 0.87
CLN3-252ENST00000636907 KIF2CQ99661 725 aa20.48■□□□□ 0.87
CLN3-252ENST00000636907 HAUS7Q99871 368 aa20.48■□□□□ 0.87
CLN3-252ENST00000636907 PDE8BO95263 885 aa20.48■□□□□ 0.87
CLN3-252ENST00000636907 IGHMBP2P38935 993 aaKnown RBP20.48■□□□□ 0.87
CLN3-252ENST00000636907 AKT1S1Q96B36 256 aa20.48■□□□□ 0.87
CLN3-252ENST00000636907 EDC3Q96F86 508 aaKnown RBP20.48■□□□□ 0.87
CLN3-252ENST00000636907 DNAJC2Q99543 621 aaKnown RBP20.48■□□□□ 0.87
CLN3-252ENST00000636907 DIAPH3Q9NSV4 1193 aa20.48■□□□□ 0.87
CLN3-252ENST00000636907 NDUFB9Q9Y6M9 179 aa20.48■□□□□ 0.87
CLN3-252ENST00000636907 SGSM2O43147 1006 aa20.47■□□□□ 0.87
CLN3-252ENST00000636907 CDC5LQ99459 802 aaKnown RBP20.47■□□□□ 0.87
CLN3-252ENST00000636907 FSD1Q9BTV5 496 aa20.47■□□□□ 0.87
CLN3-252ENST00000636907 RGPD3A6NKT7 1758 aaPredicted RBP20.47■□□□□ 0.87
CLN3-252ENST00000636907 RGPD4Q7Z3J3 1758 aa20.47■□□□□ 0.87
CLN3-252ENST00000636907 SLC4A3P48751 1232 aa20.46■□□□□ 0.87
CLN3-252ENST00000636907 CWC27Q6UX04 472 aaKnown RBP20.46■□□□□ 0.87
CLN3-252ENST00000636907 HELBQ8NG08 1087 aaPredicted RBP20.46■□□□□ 0.87
CLN3-252ENST00000636907 NLRP3Q96P20 1036 aa20.46■□□□□ 0.87
CLN3-252ENST00000636907 GORABQ5T7V8 394 aa20.45■□□□□ 0.86
CLN3-252ENST00000636907 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.45■□□□□ 0.86
CLN3-252ENST00000636907 ANO2Q9NQ90 1003 aa20.45■□□□□ 0.86
CLN3-252ENST00000636907 TFCP2L1Q9NZI6 479 aa20.45■□□□□ 0.86
CLN3-252ENST00000636907 TNRC6CQ9HCJ0 1690 aaKnown RBP20.45■□□□□ 0.86
CLN3-252ENST00000636907 IFIT1P09914 478 aaKnown RBP20.45■□□□□ 0.86
CLN3-252ENST00000636907 CCDC158Q5M9N0 1113 aa20.45■□□□□ 0.86
CLN3-252ENST00000636907 HIP1O00291 1037 aa20.44■□□□□ 0.86
CLN3-252ENST00000636907 NPHP1O15259 732 aa20.44■□□□□ 0.86
CLN3-252ENST00000636907 TM4SF1P30408 202 aa20.44■□□□□ 0.86
CLN3-252ENST00000636907 PUM3Q15397 648 aaKnown RBP20.44■□□□□ 0.86
CLN3-252ENST00000636907 TTC39AQ5SRH9 613 aa20.44■□□□□ 0.86
CLN3-252ENST00000636907 ANKRD18AQ8IVF6 992 aa20.44■□□□□ 0.86
CLN3-252ENST00000636907 RUFY2Q8WXA3 655 aa20.44■□□□□ 0.86
CLN3-252ENST00000636907 TAF5LO75529 589 aa20.43■□□□□ 0.86
CLN3-252ENST00000636907 FGFR2P21802 821 aa20.43■□□□□ 0.86
CLN3-252ENST00000636907 DDX46Q7L014 1031 aaKnown RBP20.43■□□□□ 0.86
CLN3-252ENST00000636907 CNBD1Q8NA66 436 aa20.43■□□□□ 0.86
CLN3-252ENST00000636907 TAF1P21675 1872 aa20.43■□□□□ 0.86
CLN3-252ENST00000636907 ARAP2Q8WZ64 1704 aa20.42■□□□□ 0.86
CLN3-252ENST00000636907 NMIQ13287 307 aaPredicted RBP20.42■□□□□ 0.86
CLN3-252ENST00000636907 BECN1Q14457 450 aa20.42■□□□□ 0.86
CLN3-252ENST00000636907 PRR5LQ6MZQ0 368 aa20.42■□□□□ 0.86
CLN3-252ENST00000636907 LPIN2Q92539 896 aa20.42■□□□□ 0.86
CLN3-252ENST00000636907 CELF1Q92879 486 aaKnown RBP20.42■□□□□ 0.86
CLN3-252ENST00000636907 PAG1Q9NWQ8 432 aa20.42■□□□□ 0.86
CLN3-252ENST00000636907 DAXXQ9UER7 740 aaPredicted RBP20.42■□□□□ 0.86
CLN3-252ENST00000636907 GOLIM4O00461 696 aa20.42■□□□□ 0.86
CLN3-252ENST00000636907 CHRNDQ07001 517 aa20.42■□□□□ 0.86
CLN3-252ENST00000636907 COL23A1Q86Y22 540 aaPredicted RBP20.42■□□□□ 0.86
CLN3-252ENST00000636907 FAM227BQ96M60 508 aa20.42■□□□□ 0.86
CLN3-252ENST00000636907 RFX7Q2KHR2 1363 aa20.41■□□□□ 0.86
CLN3-252ENST00000636907 SERPINB2P05120 415 aa20.41■□□□□ 0.86
CLN3-252ENST00000636907 KBTBD3Q8NAB2 608 aa20.41■□□□□ 0.86
CLN3-252ENST00000636907 TBC1D2Q9BYX2 928 aa20.41■□□□□ 0.86
CLN3-252ENST00000636907 LSG1Q9H089 658 aaKnown RBP20.41■□□□□ 0.86
CLN3-252ENST00000636907 BSDC1Q9NW68 430 aaPredicted RBP20.41■□□□□ 0.86
CLN3-252ENST00000636907 A0A0D9SFI3 127 aa20.4■□□□□ 0.86
CLN3-252ENST00000636907 SNAP23O00161 211 aa20.4■□□□□ 0.86
CLN3-252ENST00000636907 EPB41L2O43491 1005 aaKnown RBP20.4■□□□□ 0.86
CLN3-252ENST00000636907 DDR1Q08345 913 aa20.4■□□□□ 0.86
CLN3-252ENST00000636907 A0A1B0GUL6 1792 aa20.39■□□□□ 0.86
CLN3-252ENST00000636907 SLC5A1P13866 664 aa20.39■□□□□ 0.86
CLN3-252ENST00000636907 SCARF1Q14162 830 aa20.39■□□□□ 0.86
CLN3-252ENST00000636907 ZNF512BQ96KM6 892 aaPredicted RBP20.38■□□□□ 0.85
CLN3-252ENST00000636907 SNRKQ9NRH2 765 aa20.38■□□□□ 0.85
CLN3-252ENST00000636907 RAD50Q92878 1312 aa20.38■□□□□ 0.85
CLN3-252ENST00000636907 POLRMTO00411 1230 aaKnown RBP20.38■□□□□ 0.85
CLN3-252ENST00000636907 MCCP23508 829 aa20.38■□□□□ 0.85
CLN3-252ENST00000636907 RPS8P62241 208 aaKnown RBP20.38■□□□□ 0.85
CLN3-252ENST00000636907 FKBP4Q02790 459 aaKnown RBP eCLIP20.38■□□□□ 0.85
CLN3-252ENST00000636907 EN1Q05925 392 aaPredicted RBP20.38■□□□□ 0.85
CLN3-252ENST00000636907 EZH2Q15910 746 aaKnown RBP20.38■□□□□ 0.85
CLN3-252ENST00000636907 KIAA1211Q6ZU35 1233 aa20.38■□□□□ 0.85
CLN3-252ENST00000636907 FLAD1Q8NFF5 587 aa20.38■□□□□ 0.85
CLN3-252ENST00000636907 CAMKK2Q96RR4 588 aa20.38■□□□□ 0.85
CLN3-252ENST00000636907 ANTXR1Q9H6X2 564 aa20.38■□□□□ 0.85
CLN3-252ENST00000636907 PNPLA7Q6ZV29 1317 aa20.37■□□□□ 0.85
CLN3-252ENST00000636907 CHGBP05060 677 aa20.37■□□□□ 0.85
CLN3-252ENST00000636907 PHKA1P46020 1223 aa20.37■□□□□ 0.85
CLN3-252ENST00000636907 ST5P78524 1137 aa20.37■□□□□ 0.85
CLN3-252ENST00000636907 CCDC102BQ68D86 513 aa20.37■□□□□ 0.85
CLN3-252ENST00000636907 MINPP1Q9UNW1 487 aa20.37■□□□□ 0.85
CLN3-252ENST00000636907 MED23Q9ULK4 1368 aa20.36■□□□□ 0.85
CLN3-252ENST00000636907 MCAMP43121 646 aa20.36■□□□□ 0.85
CLN3-252ENST00000636907 RABEP1Q15276 862 aa20.36■□□□□ 0.85
CLN3-252ENST00000636907 SNX21Q969T3 373 aa20.36■□□□□ 0.85
CLN3-252ENST00000636907 PALD1Q9ULE6 856 aa20.36■□□□□ 0.85
CLN3-252ENST00000636907 ARID4AP29374 1257 aaPredicted RBP20.35■□□□□ 0.85
CLN3-252ENST00000636907 ZAP70P43403 619 aa20.35■□□□□ 0.85
CLN3-252ENST00000636907 PTH1RQ03431 593 aa20.35■□□□□ 0.85
CLN3-252ENST00000636907 PI16Q6UXB8 463 aa20.35■□□□□ 0.85
CLN3-252ENST00000636907 AKAP11Q9UKA4 1901 aa20.35■□□□□ 0.85
CLN3-252ENST00000636907 UQCRFS1P1P0C7P4 283 aa20.35■□□□□ 0.85
CLN3-252ENST00000636907 HSPA4P34932 840 aa20.35■□□□□ 0.85
CLN3-252ENST00000636907 ERICH6Q7L0X2 663 aa20.35■□□□□ 0.85
CLN3-252ENST00000636907 TICAM2Q86XR7 235 aa20.35■□□□□ 0.85
CLN3-252ENST00000636907 HSCBQ8IWL3 235 aa20.35■□□□□ 0.85
CLN3-252ENST00000636907 NLGN1Q8N2Q7 840 aa20.35■□□□□ 0.85
CLN3-252ENST00000636907 CCDC171Q6TFL3 1326 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms