RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 CHRNA5P30532 468 aa25.41■■□□□ 1.66
CLN3-245ENST00000636172 TFCP2Q12800 502 aa25.41■■□□□ 1.66
CLN3-245ENST00000636172 IL1RAPL2Q9NP60 686 aa25.41■■□□□ 1.66
CLN3-245ENST00000636172 A0A1B0GUL6 1792 aa25.4■■□□□ 1.66
CLN3-245ENST00000636172 STYK1Q6J9G0 422 aa25.39■■□□□ 1.66
CLN3-245ENST00000636172 ZBTB47Q9UFB7 747 aaPredicted RBP25.39■■□□□ 1.66
CLN3-245ENST00000636172 CACNA1SQ13698 1873 aa25.38■■□□□ 1.65
CLN3-245ENST00000636172 METTL24Q5JXM2 366 aa25.38■■□□□ 1.65
CLN3-245ENST00000636172 VGLL2Q8N8G2 317 aa25.38■■□□□ 1.65
CLN3-245ENST00000636172 BCL11AQ9H165 835 aa25.38■■□□□ 1.65
CLN3-245ENST00000636172 MROH5Q6ZUA9 1318 aa25.38■■□□□ 1.65
CLN3-245ENST00000636172 PDE4AP27815 886 aa25.37■■□□□ 1.65
CLN3-245ENST00000636172 CEP126Q9P2H0 1117 aa25.37■■□□□ 1.65
CLN3-245ENST00000636172 BBOX1O75936 387 aa25.37■■□□□ 1.65
CLN3-245ENST00000636172 ALDH1B1P30837 517 aa25.37■■□□□ 1.65
CLN3-245ENST00000636172 ZNF622Q969S3 477 aaKnown RBP eCLIP25.37■■□□□ 1.65
CLN3-245ENST00000636172 LRRC37AA6NMS7 1700 aa25.36■■□□□ 1.65
CLN3-245ENST00000636172 CHRNDQ07001 517 aa25.36■■□□□ 1.65
CLN3-245ENST00000636172 SLC51AQ86UW1 340 aa25.36■■□□□ 1.65
CLN3-245ENST00000636172 C16orf71Q8IYS4 520 aaPredicted RBP25.36■■□□□ 1.65
CLN3-245ENST00000636172 MINPP1Q9UNW1 487 aa25.36■■□□□ 1.65
CLN3-245ENST00000636172 CD2APQ9Y5K6 639 aa25.36■■□□□ 1.65
CLN3-245ENST00000636172 DPEP1P16444 411 aa25.35■■□□□ 1.65
CLN3-245ENST00000636172 CLASRPQ8N2M8 674 aaKnown RBP25.35■■□□□ 1.65
CLN3-245ENST00000636172 HELBQ8NG08 1087 aaPredicted RBP25.35■■□□□ 1.65
CLN3-245ENST00000636172 ZNF609O15014 1411 aa25.34■■□□□ 1.65
CLN3-245ENST00000636172 PPEF1O14829 653 aaPredicted RBP25.34■■□□□ 1.65
CLN3-245ENST00000636172 TGFB2P61812 414 aa25.34■■□□□ 1.65
CLN3-245ENST00000636172 TNNI3KQ59H18 835 aa25.34■■□□□ 1.65
CLN3-245ENST00000636172 OTUD7AQ8TE49 926 aaPredicted RBP25.34■■□□□ 1.65
CLN3-245ENST00000636172 EAF2Q96CJ1 260 aaPredicted RBP25.34■■□□□ 1.65
CLN3-245ENST00000636172 GPR108Q9NPR9 543 aa25.34■■□□□ 1.65
CLN3-245ENST00000636172 PPP1R1BQ9UD71 204 aaPredicted RBP25.34■■□□□ 1.65
CLN3-245ENST00000636172 FPGT-TNNI3KV9GXZ4 949 aa25.34■■□□□ 1.65
CLN3-245ENST00000636172 SLX4Q8IY92 1834 aa25.34■■□□□ 1.65
CLN3-245ENST00000636172 A0A0G2JLW4 131 aa25.33■■□□□ 1.65
CLN3-245ENST00000636172 PDE8BO95263 885 aa25.33■■□□□ 1.65
CLN3-245ENST00000636172 KCNA3P22001 575 aa25.33■■□□□ 1.65
CLN3-245ENST00000636172 TMC4Q7Z404 712 aa25.33■■□□□ 1.65
CLN3-245ENST00000636172 TAF5LO75529 589 aa25.32■■□□□ 1.64
CLN3-245ENST00000636172 AACSQ86V21 672 aa25.32■■□□□ 1.64
CLN3-245ENST00000636172 CNKSR1Q969H4 720 aa25.32■■□□□ 1.64
CLN3-245ENST00000636172 PRPF40BQ6NWY9 871 aaKnown RBP25.32■■□□□ 1.64
CLN3-245ENST00000636172 KLHL34Q8N239 644 aa25.32■■□□□ 1.64
CLN3-245ENST00000636172 SALL3Q9BXA9 1300 aa25.31■■□□□ 1.64
CLN3-245ENST00000636172 RGS3P49796 1198 aa25.31■■□□□ 1.64
CLN3-245ENST00000636172 AKAP2Q9Y2D5 859 aa25.31■■□□□ 1.64
CLN3-245ENST00000636172 ATP6V0A2Q9Y487 856 aa25.31■■□□□ 1.64
CLN3-245ENST00000636172 BRCA1P38398 1863 aaKnown RBP25.31■■□□□ 1.64
CLN3-245ENST00000636172 PUM3Q15397 648 aaKnown RBP25.3■■□□□ 1.64
CLN3-245ENST00000636172 SP8Q8IXZ3 490 aa25.3■■□□□ 1.64
CLN3-245ENST00000636172 ANKRD2Q9GZV1 360 aa25.3■■□□□ 1.64
CLN3-245ENST00000636172 TLR7Q9NYK1 1049 aaKnown RBP25.3■■□□□ 1.64
CLN3-245ENST00000636172 LTBP1Q14766 1721 aa25.29■■□□□ 1.64
CLN3-245ENST00000636172 ARAP2Q8WZ64 1704 aa25.29■■□□□ 1.64
CLN3-245ENST00000636172 A0A1B0GUL7 405 aa25.29■■□□□ 1.64
CLN3-245ENST00000636172 IFIT2P09913 472 aaKnown RBP25.29■■□□□ 1.64
CLN3-245ENST00000636172 FGFR2P21802 821 aa25.29■■□□□ 1.64
CLN3-245ENST00000636172 TIMM10P62072 90 aa25.29■■□□□ 1.64
CLN3-245ENST00000636172 ATP2B3Q16720 1220 aa25.29■■□□□ 1.64
CLN3-245ENST00000636172 PLEKHM2Q8IWE5 1019 aa25.29■■□□□ 1.64
CLN3-245ENST00000636172 CCDC8Q9H0W5 538 aaPredicted RBP25.29■■□□□ 1.64
CLN3-245ENST00000636172 SNAP23O00161 211 aa25.28■■□□□ 1.64
CLN3-245ENST00000636172 DBNLQ9UJU6 430 aaKnown RBP25.28■■□□□ 1.64
CLN3-245ENST00000636172 TTLL6Q8N841 843 aa25.27■■□□□ 1.64
CLN3-245ENST00000636172 WTIPA6NIX2 430 aaPredicted RBP25.27■■□□□ 1.64
CLN3-245ENST00000636172 MX1P20591 662 aa25.27■■□□□ 1.64
CLN3-245ENST00000636172 GPSM2P81274 684 aa25.27■■□□□ 1.64
CLN3-245ENST00000636172 OLFM4Q6UX06 510 aa25.27■■□□□ 1.64
CLN3-245ENST00000636172 LPIN2Q92539 896 aa25.27■■□□□ 1.64
CLN3-245ENST00000636172 NEUROD6Q96NK8 337 aa25.27■■□□□ 1.64
CLN3-245ENST00000636172 XDHP47989 1333 aa25.26■■□□□ 1.63
CLN3-245ENST00000636172 C7orf43Q8WVR3 580 aa25.26■■□□□ 1.63
CLN3-245ENST00000636172 DBNDD2Q9BQY9 259 aa25.26■■□□□ 1.63
CLN3-245ENST00000636172 ANKIB1Q9P2G1 1089 aa25.26■■□□□ 1.63
CLN3-245ENST00000636172 ADORA1P30542 326 aa25.25■■□□□ 1.63
CLN3-245ENST00000636172 PDE1AP54750 535 aa25.25■■□□□ 1.63
CLN3-245ENST00000636172 NLGN2Q8NFZ4 835 aa25.25■■□□□ 1.63
CLN3-245ENST00000636172 PIM2Q9P1W9 311 aa25.25■■□□□ 1.63
CLN3-245ENST00000636172 SLC5A1P13866 664 aa25.24■■□□□ 1.63
CLN3-245ENST00000636172 UBE4AQ14139 1066 aa25.24■■□□□ 1.63
CLN3-245ENST00000636172 TSHZ3Q63HK5 1081 aa25.24■■□□□ 1.63
CLN3-245ENST00000636172 XAGE2Q96GT9 111 aa25.24■■□□□ 1.63
CLN3-245ENST00000636172 FHDC1Q9C0D6 1143 aaPredicted RBP25.24■■□□□ 1.63
CLN3-245ENST00000636172 PODXL2Q9NZ53 605 aa25.24■■□□□ 1.63
CLN3-245ENST00000636172 STAP2Q9UGK3 403 aa25.24■■□□□ 1.63
CLN3-245ENST00000636172 NSFL1CQ9UNZ2 370 aaKnown RBP25.23■■□□□ 1.63
CLN3-245ENST00000636172 DUOX1Q9NRD9 1551 aa25.22■■□□□ 1.63
CLN3-245ENST00000636172 OSBPL3Q9H4L5 887 aa25.22■■□□□ 1.63
CLN3-245ENST00000636172 ZNF219Q9P2Y4 722 aaPredicted RBP25.22■■□□□ 1.63
CLN3-245ENST00000636172 LEMD3Q9Y2U8 911 aa25.22■■□□□ 1.63
CLN3-245ENST00000636172 GOLGB1Q14789 3259 aaKnown RBP25.22■■□□□ 1.63
CLN3-245ENST00000636172 ZNF804BA4D1E1 1349 aa25.22■■□□□ 1.63
CLN3-245ENST00000636172 IFIT1P09914 478 aaKnown RBP25.22■■□□□ 1.63
CLN3-245ENST00000636172 KCNJ4P48050 445 aa25.22■■□□□ 1.63
CLN3-245ENST00000636172 SNED1Q8TER0 1413 aa25.21■■□□□ 1.63
CLN3-245ENST00000636172 GPATCH3Q96I76 525 aa25.21■■□□□ 1.63
CLN3-245ENST00000636172 TMX4Q9H1E5 349 aaPredicted RBP25.21■■□□□ 1.63
CLN3-245ENST00000636172 ECHDC1Q9NTX5 307 aa25.21■■□□□ 1.63
CLN3-245ENST00000636172 AOX1Q06278 1338 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms