RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SPTLC3Q9NUV7 552 aa15.11■□□□□ 0.01
LINC00540-203ENST00000631321 PFKFB2O60825 505 aa15.1■□□□□ 0.01
LINC00540-203ENST00000631321 CADPS2Q86UW7 1296 aa15.1■□□□□ 0.01
LINC00540-203ENST00000631321 AGXT2Q9BYV1 514 aa15.1■□□□□ 0.01
LINC00540-203ENST00000631321 UQCRHLA0A096LP55 91 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 ERVV-2B6SEH9 535 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 TPM3P06753 285 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 UQCRHP07919 91 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 TYRO3Q06418 890 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 ZMYM1Q5SVZ6 1142 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 STOX1Q6ZVD7 989 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 CLSTN2Q9H4D0 955 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 ZSCAN16Q9H4T2 348 aaPredicted RBP15.09■□□□□ 0.01
LINC00540-203ENST00000631321 ATG3Q9NT62 314 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 PAG1Q9NWQ8 432 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 MRVI1Q9Y6F6 885 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 CIAO1O76071 339 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 TTLL7Q6ZT98 887 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 DHX32Q7L7V1 743 aaKnown RBP15.09■□□□□ 0.01
LINC00540-203ENST00000631321 CCDC191Q8NCU4 936 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 BRF1Q92994 677 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 PDCL3Q9H2J4 239 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 DACT1Q9NYF0 836 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 PCDH11XQ9BZA7 1347 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 PCDH11YQ9BZA8 1340 aa15.09■□□□□ 0.01
LINC00540-203ENST00000631321 DYNC1I1O14576 645 aa15.08■□□□□ 0.01
LINC00540-203ENST00000631321 EXOSC10Q01780 885 aaKnown RBP15.08■□□□□ 0.01
LINC00540-203ENST00000631321 SCRN1Q12765 414 aa15.08■□□□□ 0.01
LINC00540-203ENST00000631321 NOLC1Q14978 699 aaKnown RBP eCLIP15.08■□□□□ 0.01
LINC00540-203ENST00000631321 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.08■□□□□ 0.01
LINC00540-203ENST00000631321 ZNF830Q96NB3 372 aaPredicted RBP15.08■□□□□ 0.01
LINC00540-203ENST00000631321 TTC12Q9H892 705 aaPredicted RBP15.08■□□□□ 0.01
LINC00540-203ENST00000631321 TFIP11Q9UBB9 837 aaKnown RBP15.08■□□□□ 0.01
LINC00540-203ENST00000631321 NUP188Q5SRE5 1749 aa15.08■□□□□ 0
LINC00540-203ENST00000631321 KCPQ6ZWJ8 1503 aa15.08■□□□□ 0
LINC00540-203ENST00000631321 GOLGA6L4A6NEF3 574 aa15.08■□□□□ 0
LINC00540-203ENST00000631321 EYA2O00167 538 aa15.08■□□□□ 0
LINC00540-203ENST00000631321 PRKCSHP14314 528 aaPredicted RBP15.08■□□□□ 0
LINC00540-203ENST00000631321 NKX1-1Q15270 411 aaPredicted RBP15.08■□□□□ 0
LINC00540-203ENST00000631321 PGBD1Q96JS3 809 aa15.08■□□□□ 0
LINC00540-203ENST00000631321 TJP1Q07157 1748 aa15.08■□□□□ 0
LINC00540-203ENST00000631321 UBR2Q8IWV8 1755 aa15.08■□□□□ 0
LINC00540-203ENST00000631321 GOLIM4O00461 696 aa15.07■□□□□ 0
LINC00540-203ENST00000631321 NAA16Q6N069 864 aaPredicted RBP15.07■□□□□ 0
LINC00540-203ENST00000631321 TNMDQ9H2S6 317 aa15.07■□□□□ 0
LINC00540-203ENST00000631321 HSP90B1P14625 803 aaKnown RBP15.07■□□□□ 0
LINC00540-203ENST00000631321 ZCRB1Q8TBF4 217 aaKnown RBP15.07■□□□□ 0
LINC00540-203ENST00000631321 WDR17Q8IZU2 1322 aa15.07■□□□□ 0
LINC00540-203ENST00000631321 STRCP1A6NGW2 1772 aa15.07■□□□□ 0
LINC00540-203ENST00000631321 NSUN7Q8NE18 718 aaKnown RBP15.06■□□□□ 0
LINC00540-203ENST00000631321 NEUROD6Q96NK8 337 aa15.06■□□□□ 0
LINC00540-203ENST00000631321 CHMP3Q9Y3E7 222 aa15.06■□□□□ 0
LINC00540-203ENST00000631321 TNS2Q63HR2 1409 aa15.06■□□□□ 0
LINC00540-203ENST00000631321 HMGN5P82970 282 aaKnown RBP15.06■□□□□ 0
LINC00540-203ENST00000631321 CAMK4Q16566 473 aa15.06■□□□□ 0
LINC00540-203ENST00000631321 MPNDQ8N594 471 aa15.06■□□□□ 0
LINC00540-203ENST00000631321 CFAP45Q9UL16 551 aa15.06■□□□□ 0
LINC00540-203ENST00000631321 PAPPAQ13219 1627 aa15.06■□□□□ 0
LINC00540-203ENST00000631321 H3BQV1 296 aa15.05■□□□□ 0
LINC00540-203ENST00000631321 RNF113AO15541 343 aaKnown RBP15.05■□□□□ 0
LINC00540-203ENST00000631321 ADD1P35611 737 aaKnown RBP15.05■□□□□ 0
LINC00540-203ENST00000631321 TIMM10P62072 90 aa15.05■□□□□ 0
LINC00540-203ENST00000631321 IFFO2Q5TF58 517 aa15.05■□□□□ 0
LINC00540-203ENST00000631321 FBXL16Q8N461 479 aa15.05■□□□□ 0
LINC00540-203ENST00000631321 PRIMPOLQ96LW4 560 aa15.05■□□□□ 0
LINC00540-203ENST00000631321 MAP7D2Q96T17 732 aa15.05■□□□□ 0
LINC00540-203ENST00000631321 SPEF2Q9C093 1822 aa15.05■□□□□ 0
LINC00540-203ENST00000631321 CTDNEP1O95476 244 aa15.05■□□□□ -0
LINC00540-203ENST00000631321 A1BGP04217 495 aa15.05■□□□□ -0
LINC00540-203ENST00000631321 HSPD1P10809 573 aaKnown RBP15.05■□□□□ -0
LINC00540-203ENST00000631321 LRRC24Q50LG9 513 aa15.05■□□□□ -0
LINC00540-203ENST00000631321 KCNF1Q9H3M0 494 aa15.05■□□□□ -0
LINC00540-203ENST00000631321 SALL1Q9NSC2 1324 aa15.05■□□□□ -0
LINC00540-203ENST00000631321 GOLGA6L6A8MZA4 724 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 NR1I2O75469 434 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 ATL3Q6DD88 541 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 MYRIPQ8NFW9 859 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 KIAA1524Q8TCG1 905 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 LRRC2Q9BYS8 371 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 CBX8Q9HC52 389 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 FBXO3Q9UK99 471 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 KIF3AQ9Y496 699 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 MAST3O60307 1309 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 E7EWF7 191 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 CAVIN2O95810 425 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 IFIT1P09914 478 aaKnown RBP15.04■□□□□ -0
LINC00540-203ENST00000631321 CKAP2LQ8IYA6 745 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 TDRD7Q8NHU6 1098 aaKnown RBP15.04■□□□□ -0
LINC00540-203ENST00000631321 DDX11Q96FC9 970 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 ZNF274Q96GC6 653 aaPredicted RBP15.04■□□□□ -0
LINC00540-203ENST00000631321 ISCA1Q9BUE6 129 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 RCOR1Q9UKL0 485 aa15.04■□□□□ -0
LINC00540-203ENST00000631321 A0A1B0GUL7 405 aa15.03■□□□□ -0
LINC00540-203ENST00000631321 FGD1P98174 961 aa15.03■□□□□ -0
LINC00540-203ENST00000631321 PLCB2Q00722 1185 aa15.03■□□□□ -0
LINC00540-203ENST00000631321 SLFNL1Q499Z3 407 aa15.03■□□□□ -0
LINC00540-203ENST00000631321 ANO6Q4KMQ2 910 aa15.03■□□□□ -0
LINC00540-203ENST00000631321 BICD2Q8TD16 824 aa15.03■□□□□ -0
LINC00540-203ENST00000631321 CHMP4CQ96CF2 233 aa15.03■□□□□ -0
LINC00540-203ENST00000631321 PTPDC1A2A3K4 754 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms