RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CLEC11AQ9Y240 323 aa22.71■■□□□ 1.23
CLN3-239ENST00000628023 EPHX2P34913 555 aa22.7■■□□□ 1.22
CLN3-239ENST00000628023 FOXO4P98177 505 aa22.7■■□□□ 1.22
CLN3-239ENST00000628023 TMC4Q7Z404 712 aa22.7■■□□□ 1.22
CLN3-239ENST00000628023 ITPRIPQ8IWB1 547 aa22.7■■□□□ 1.22
CLN3-239ENST00000628023 LARGE2Q8N3Y3 721 aa22.7■■□□□ 1.22
CLN3-239ENST00000628023 TAF1P21675 1872 aa22.69■■□□□ 1.22
CLN3-239ENST00000628023 RTL9Q8NET4 1388 aa22.69■■□□□ 1.22
CLN3-239ENST00000628023 RPS8P62241 208 aaKnown RBP22.69■■□□□ 1.22
CLN3-239ENST00000628023 LMBR1LQ6UX01 489 aa22.69■■□□□ 1.22
CLN3-239ENST00000628023 ANKRD18AQ8IVF6 992 aa22.69■■□□□ 1.22
CLN3-239ENST00000628023 BICC1Q9H694 974 aaKnown RBP22.69■■□□□ 1.22
CLN3-239ENST00000628023 ATP6V0A2Q9Y487 856 aa22.69■■□□□ 1.22
CLN3-239ENST00000628023 PLIN1O60240 522 aa22.68■■□□□ 1.22
CLN3-239ENST00000628023 CSF1RP07333 972 aa22.68■■□□□ 1.22
CLN3-239ENST00000628023 ITGA6P23229 1130 aa22.68■■□□□ 1.22
CLN3-239ENST00000628023 EPHA10Q5JZY3 1008 aa22.68■■□□□ 1.22
CLN3-239ENST00000628023 MEIS3Q99687 375 aa22.68■■□□□ 1.22
CLN3-239ENST00000628023 HDAC5Q9UQL6 1122 aa22.68■■□□□ 1.22
CLN3-239ENST00000628023 SNED1Q8TER0 1413 aa22.67■■□□□ 1.22
CLN3-239ENST00000628023 ANKRD18BA2A2Z9 1011 aa22.67■■□□□ 1.22
CLN3-239ENST00000628023 GNAI3P08754 354 aa22.67■■□□□ 1.22
CLN3-239ENST00000628023 RLBP1P12271 317 aa22.67■■□□□ 1.22
CLN3-239ENST00000628023 LMOD1P29536 600 aaPredicted RBP22.67■■□□□ 1.22
CLN3-239ENST00000628023 IFIT5Q13325 482 aaKnown RBP22.67■■□□□ 1.22
CLN3-239ENST00000628023 TAF7LQ5H9L4 462 aa22.67■■□□□ 1.22
CLN3-239ENST00000628023 SUPT20HQ8NEM7 779 aa22.67■■□□□ 1.22
CLN3-239ENST00000628023 PANK1Q8TE04 598 aa22.67■■□□□ 1.22
CLN3-239ENST00000628023 VPS33BQ9H267 617 aa22.67■■□□□ 1.22
CLN3-239ENST00000628023 GJA3Q9Y6H8 435 aa22.67■■□□□ 1.22
CLN3-239ENST00000628023 IGHMBP2P38935 993 aaKnown RBP22.66■■□□□ 1.22
CLN3-239ENST00000628023 CCDC57Q2TAC2 916 aa22.66■■□□□ 1.22
CLN3-239ENST00000628023 SP8Q8IXZ3 490 aa22.66■■□□□ 1.22
CLN3-239ENST00000628023 NIM1KQ8IY84 436 aa22.66■■□□□ 1.22
CLN3-239ENST00000628023 SLC51AQ86UW1 340 aa22.65■■□□□ 1.22
CLN3-239ENST00000628023 KAZALD1Q96I82 304 aa22.65■■□□□ 1.22
CLN3-239ENST00000628023 COL4A1P02462 1669 aa22.65■■□□□ 1.22
CLN3-239ENST00000628023 PASKQ96RG2 1323 aa22.64■■□□□ 1.22
CLN3-239ENST00000628023 PPIP5K2O43314 1243 aa22.64■■□□□ 1.21
CLN3-239ENST00000628023 MPHOSPH8Q99549 860 aa22.64■■□□□ 1.21
CLN3-239ENST00000628023 MKRN1Q9UHC7 482 aaKnown RBP22.64■■□□□ 1.21
CLN3-239ENST00000628023 LRRFIP2Q9Y608 721 aaKnown RBP22.64■■□□□ 1.21
CLN3-239ENST00000628023 TMEM88BA6NKF7 163 aa22.63■■□□□ 1.21
CLN3-239ENST00000628023 HSPA1AP0DMV8 641 aaKnown RBP22.63■■□□□ 1.21
CLN3-239ENST00000628023 HSPA1BP0DMV9 641 aaKnown RBP22.63■■□□□ 1.21
CLN3-239ENST00000628023 RABL6Q3YEC7 729 aaPredicted RBP22.63■■□□□ 1.21
CLN3-239ENST00000628023 DPP8Q6V1X1 898 aaPredicted RBP22.63■■□□□ 1.21
CLN3-239ENST00000628023 SPEF2Q9C093 1822 aa22.62■■□□□ 1.21
CLN3-239ENST00000628023 ITGBL1O95965 494 aaPredicted RBP22.62■■□□□ 1.21
CLN3-239ENST00000628023 CNTROBQ8N137 903 aa22.62■■□□□ 1.21
CLN3-239ENST00000628023 MPNDQ8N594 471 aa22.62■■□□□ 1.21
CLN3-239ENST00000628023 ANKRD44Q8N8A2 993 aa22.62■■□□□ 1.21
CLN3-239ENST00000628023 LRRC37AA6NMS7 1700 aa22.61■■□□□ 1.21
CLN3-239ENST00000628023 GNAI2P04899 355 aa22.61■■□□□ 1.21
CLN3-239ENST00000628023 COL13A1Q5TAT6 717 aaPredicted RBP22.61■■□□□ 1.21
CLN3-239ENST00000628023 BSDC1Q9NW68 430 aaPredicted RBP22.61■■□□□ 1.21
CLN3-239ENST00000628023 ANKIB1Q9P2G1 1089 aa22.61■■□□□ 1.21
CLN3-239ENST00000628023 NSFL1CQ9UNZ2 370 aaKnown RBP22.61■■□□□ 1.21
CLN3-239ENST00000628023 AOC3Q16853 763 aa22.6■■□□□ 1.21
CLN3-239ENST00000628023 PCNTO95613 3336 aa22.59■■□□□ 1.21
CLN3-239ENST00000628023 RRP1P56182 461 aaKnown RBP22.59■■□□□ 1.21
CLN3-239ENST00000628023 PDE3AQ14432 1141 aa22.59■■□□□ 1.21
CLN3-239ENST00000628023 MVPQ14764 893 aaKnown RBP22.59■■□□□ 1.21
CLN3-239ENST00000628023 ZNF594Q96JF6 807 aaPredicted RBP22.59■■□□□ 1.21
CLN3-239ENST00000628023 RTFDC1Q9BY42 306 aaPredicted RBP22.59■■□□□ 1.21
CLN3-239ENST00000628023 ZNRF3Q9ULT6 936 aa22.59■■□□□ 1.21
CLN3-239ENST00000628023 COG6Q9Y2V7 657 aa22.59■■□□□ 1.21
CLN3-239ENST00000628023 GPSM2P81274 684 aa22.58■■□□□ 1.21
CLN3-239ENST00000628023 MAP1SQ66K74 1059 aaPredicted RBP22.58■■□□□ 1.21
CLN3-239ENST00000628023 CNNM1Q9NRU3 951 aa22.58■■□□□ 1.21
CLN3-239ENST00000628023 CNTNAP1P78357 1384 aa22.58■■□□□ 1.21
CLN3-239ENST00000628023 LDHAL6AQ6ZMR3 332 aa22.57■■□□□ 1.2
CLN3-239ENST00000628023 USP50Q70EL3 339 aaPredicted RBP22.57■■□□□ 1.2
CLN3-239ENST00000628023 TNS4Q8IZW8 715 aa22.57■■□□□ 1.2
CLN3-239ENST00000628023 DDX19BQ9UMR2 479 aa22.57■■□□□ 1.2
CLN3-239ENST00000628023 COL4A5P29400 1685 aa22.57■■□□□ 1.2
CLN3-239ENST00000628023 XDHP47989 1333 aa22.57■■□□□ 1.2
CLN3-239ENST00000628023 C6orf229H3BNL8 230 aa22.56■■□□□ 1.2
CLN3-239ENST00000628023 EPS15P42566 896 aa22.56■■□□□ 1.2
CLN3-239ENST00000628023 SCNN1DP51172 638 aa22.56■■□□□ 1.2
CLN3-239ENST00000628023 C20orf194Q5TEA3 1177 aa22.56■■□□□ 1.2
CLN3-239ENST00000628023 MINPP1Q9UNW1 487 aa22.56■■□□□ 1.2
CLN3-239ENST00000628023 ZBTB7BO15156 539 aaPredicted RBP22.55■■□□□ 1.2
CLN3-239ENST00000628023 UFL1O94874 794 aa22.55■■□□□ 1.2
CLN3-239ENST00000628023 CHMP4BQ9H444 224 aaKnown RBP22.55■■□□□ 1.2
CLN3-239ENST00000628023 C1orf115Q9H7X2 142 aa22.55■■□□□ 1.2
CLN3-239ENST00000628023 GGA1Q9UJY5 639 aa22.55■■□□□ 1.2
CLN3-239ENST00000628023 ADAMTSL1Q8N6G6 1762 aa22.55■■□□□ 1.2
CLN3-239ENST00000628023 KIAA2012Q0VF49 1180 aa22.54■■□□□ 1.2
CLN3-239ENST00000628023 TNIP1Q15025 636 aa22.54■■□□□ 1.2
CLN3-239ENST00000628023 ANKRD2Q9GZV1 360 aa22.54■■□□□ 1.2
CLN3-239ENST00000628023 SRGAP3O43295 1099 aa22.53■■□□□ 1.2
CLN3-239ENST00000628023 ATP2B4P23634 1241 aa22.53■■□□□ 1.2
CLN3-239ENST00000628023 KCNJ4P48050 445 aa22.53■■□□□ 1.2
CLN3-239ENST00000628023 CHRNDQ07001 517 aa22.53■■□□□ 1.2
CLN3-239ENST00000628023 CXCL9Q07325 125 aa22.53■■□□□ 1.2
CLN3-239ENST00000628023 DEFB115Q30KQ5 88 aa22.53■■□□□ 1.2
CLN3-239ENST00000628023 EYA3Q99504 573 aa22.53■■□□□ 1.2
CLN3-239ENST00000628023 ADARB2Q9NS39 739 aaKnown RBP22.53■■□□□ 1.2
CLN3-239ENST00000628023 PODXL2Q9NZ53 605 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms