RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 CHPF2Q9P2E5 772 aa10.2□□□□□ -0.78
CLK1-215ENST00000621181 LAS1LQ9Y4W2 734 aaKnown RBP10.2□□□□□ -0.78
CLK1-215ENST00000621181 LRRC37AA6NMS7 1700 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 EGFRP00533 1210 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 KRT24Q2M2I5 525 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 RTL5Q5HYW3 569 aaPredicted RBP10.19□□□□□ -0.78
CLK1-215ENST00000621181 RBM26Q5T8P6 1007 aaKnown RBP10.19□□□□□ -0.78
CLK1-215ENST00000621181 RGMBQ6NW40 437 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 CELF1Q92879 486 aaKnown RBP10.19□□□□□ -0.78
CLK1-215ENST00000621181 EYA3Q99504 573 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 POLR2AP24928 1970 aaKnown RBP10.19□□□□□ -0.78
CLK1-215ENST00000621181 PDE4DIPQ5VU43 2346 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 TNRC18O15417 2968 aaPredicted RBP10.19□□□□□ -0.78
CLK1-215ENST00000621181 ECE2O60344 883 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 RPS12P25398 132 aaKnown RBP10.19□□□□□ -0.78
CLK1-215ENST00000621181 ZNF157P51786 506 aaPredicted RBP10.19□□□□□ -0.78
CLK1-215ENST00000621181 HDGFL1Q5TGJ6 251 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 ANKRD13DQ6ZTN6 518 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 PLBD2Q8NHP8 589 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 CCDC102AQ96A19 550 aa10.19□□□□□ -0.78
CLK1-215ENST00000621181 ADM5C9JUS6 153 aa10.18□□□□□ -0.78
CLK1-215ENST00000621181 ATP5J2-PTCD1G3V325 749 aa10.18□□□□□ -0.78
CLK1-215ENST00000621181 G3V3G9 751 aa10.18□□□□□ -0.78
CLK1-215ENST00000621181 DOK7Q18PE1 504 aa10.18□□□□□ -0.78
CLK1-215ENST00000621181 KIF4BQ2VIQ3 1234 aa10.18□□□□□ -0.78
CLK1-215ENST00000621181 DCAF8Q5TAQ9 597 aa10.18□□□□□ -0.78
CLK1-215ENST00000621181 SULF1Q8IWU6 871 aa10.18□□□□□ -0.78
CLK1-215ENST00000621181 YTHDC1Q96MU7 727 aaKnown RBP10.18□□□□□ -0.78
CLK1-215ENST00000621181 POLLQ9UGP5 575 aa10.18□□□□□ -0.78
CLK1-215ENST00000621181 DDX60Q8IY21 1712 aaKnown RBP10.17□□□□□ -0.78
CLK1-215ENST00000621181 CHL1O00533 1208 aa10.17□□□□□ -0.78
CLK1-215ENST00000621181 GPSM2P81274 684 aa10.17□□□□□ -0.78
CLK1-215ENST00000621181 SF3B3Q15393 1217 aaKnown RBP10.17□□□□□ -0.78
CLK1-215ENST00000621181 ZC3H12CQ9C0D7 883 aaKnown RBP10.17□□□□□ -0.78
CLK1-215ENST00000621181 KCNQ5Q9NR82 932 aa10.17□□□□□ -0.78
CLK1-215ENST00000621181 SAGE1Q9NXZ1 904 aa10.17□□□□□ -0.78
CLK1-215ENST00000621181 GGA3Q9NZ52 723 aa10.17□□□□□ -0.78
CLK1-215ENST00000621181 DBF4Q9UBU7 674 aaPredicted RBP10.17□□□□□ -0.78
CLK1-215ENST00000621181 FAM155AB1AL88 458 aaPredicted RBP10.17□□□□□ -0.78
CLK1-215ENST00000621181 TRPA1O75762 1119 aa10.17□□□□□ -0.78
CLK1-215ENST00000621181 RPS8P62241 208 aaKnown RBP10.17□□□□□ -0.78
CLK1-215ENST00000621181 CCDC146Q8IYE0 955 aa10.17□□□□□ -0.78
CLK1-215ENST00000621181 ANKIB1Q9P2G1 1089 aa10.17□□□□□ -0.78
CLK1-215ENST00000621181 RTL9Q8NET4 1388 aa10.16□□□□□ -0.78
CLK1-215ENST00000621181 IRS4O14654 1257 aaPredicted RBP10.16□□□□□ -0.78
CLK1-215ENST00000621181 HOXB7P09629 217 aa10.16□□□□□ -0.78
CLK1-215ENST00000621181 KIF23Q02241 960 aaPredicted RBP10.16□□□□□ -0.78
CLK1-215ENST00000621181 TBC1D16Q8TBP0 767 aa10.16□□□□□ -0.78
CLK1-215ENST00000621181 ISCA1Q9BUE6 129 aa10.16□□□□□ -0.78
CLK1-215ENST00000621181 AKAP11Q9UKA4 1901 aa10.16□□□□□ -0.78
CLK1-215ENST00000621181 UFL1O94874 794 aa10.15□□□□□ -0.78
CLK1-215ENST00000621181 RALBP1Q15311 655 aa10.15□□□□□ -0.78
CLK1-215ENST00000621181 HYPKQ9NX55 129 aa10.15□□□□□ -0.78
CLK1-215ENST00000621181 RNF186Q9NXI6 227 aa10.15□□□□□ -0.78
CLK1-215ENST00000621181 SLC10A3P09131 477 aa10.14□□□□□ -0.79
CLK1-215ENST00000621181 VIL1P09327 827 aaKnown RBP10.14□□□□□ -0.79
CLK1-215ENST00000621181 HSP90B1P14625 803 aaKnown RBP10.14□□□□□ -0.79
CLK1-215ENST00000621181 GGA1Q9UJY5 639 aa10.14□□□□□ -0.79
CLK1-215ENST00000621181 SCN9AQ15858 1988 aa10.14□□□□□ -0.79
CLK1-215ENST00000621181 SOX10P56693 466 aa10.14□□□□□ -0.79
CLK1-215ENST00000621181 GOLGA2Q08379 1002 aa10.14□□□□□ -0.79
CLK1-215ENST00000621181 ANGEL2Q5VTE6 544 aaKnown RBP10.14□□□□□ -0.79
CLK1-215ENST00000621181 RIC3Q7Z5B4 369 aa10.14□□□□□ -0.79
CLK1-215ENST00000621181 ZBTB38Q8NAP3 1195 aaPredicted RBP10.14□□□□□ -0.79
CLK1-215ENST00000621181 CDCA5Q96FF9 252 aa10.14□□□□□ -0.79
CLK1-215ENST00000621181 PODXL2Q9NZ53 605 aa10.14□□□□□ -0.79
CLK1-215ENST00000621181 COL4A1P02462 1669 aa10.14□□□□□ -0.79
CLK1-215ENST00000621181 ASTN2O75129 1339 aaPredicted RBP10.13□□□□□ -0.79
CLK1-215ENST00000621181 SPDYE2BA6NHP3 402 aa10.13□□□□□ -0.79
CLK1-215ENST00000621181 SPDYE6P0CI01 402 aa10.13□□□□□ -0.79
CLK1-215ENST00000621181 TRIM28Q13263 835 aaKnown RBP10.13□□□□□ -0.79
CLK1-215ENST00000621181 WDR43Q15061 677 aaKnown RBP eCLIP10.13□□□□□ -0.79
CLK1-215ENST00000621181 SPDYE2Q495Y8 402 aa10.13□□□□□ -0.79
CLK1-215ENST00000621181 DUSP27Q5VZP5 1158 aa10.13□□□□□ -0.79
CLK1-215ENST00000621181 RUNDC1Q96C34 613 aa10.13□□□□□ -0.79
CLK1-215ENST00000621181 CSRNP1Q96S65 589 aa10.13□□□□□ -0.79
CLK1-215ENST00000621181 SEC31BQ9NQW1 1179 aa10.13□□□□□ -0.79
CLK1-215ENST00000621181 TRIM35Q9UPQ4 493 aa10.13□□□□□ -0.79
CLK1-215ENST00000621181 SCARF1Q14162 830 aa10.12□□□□□ -0.79
CLK1-215ENST00000621181 CCDC152Q4G0S7 254 aa10.12□□□□□ -0.79
CLK1-215ENST00000621181 AGBL3Q8NEM8 1001 aa10.12□□□□□ -0.79
CLK1-215ENST00000621181 PCDH10Q9P2E7 1040 aa10.12□□□□□ -0.79
CLK1-215ENST00000621181 SPDYE4A6NLX3 237 aa10.12□□□□□ -0.79
CLK1-215ENST00000621181 USP17L8P0C7I0 530 aa10.12□□□□□ -0.79
CLK1-215ENST00000621181 ZNF280AP59817 542 aaPredicted RBP10.12□□□□□ -0.79
CLK1-215ENST00000621181 FKBP1BP68106 108 aa10.12□□□□□ -0.79
CLK1-215ENST00000621181 RSBN1LQ6PCB5 846 aaPredicted RBP10.12□□□□□ -0.79
CLK1-215ENST00000621181 CTU1Q7Z7A3 348 aaKnown RBP10.12□□□□□ -0.79
CLK1-215ENST00000621181 RASAL3Q86YV0 1011 aa10.12□□□□□ -0.79
CLK1-215ENST00000621181 REM2Q8IYK8 340 aaPredicted RBP10.12□□□□□ -0.79
CLK1-215ENST00000621181 CCDC85AQ96PX6 553 aaPredicted RBP10.12□□□□□ -0.79
CLK1-215ENST00000621181 ANKRD18AQ8IVF6 992 aa10.11□□□□□ -0.79
CLK1-215ENST00000621181 MYD88Q99836 296 aa10.11□□□□□ -0.79
CLK1-215ENST00000621181 MYOZ2Q9NPC6 264 aa10.11□□□□□ -0.79
CLK1-215ENST00000621181 MBIPQ9NS73 344 aa10.11□□□□□ -0.79
CLK1-215ENST00000621181 XDHP47989 1333 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 MYBBP1AQ9BQG0 1328 aaKnown RBP10.1□□□□□ -0.79
CLK1-215ENST00000621181 USP17L3A6NCW0 530 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 USP17L4A6NCW7 530 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 PDE8AO60658 829 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 133.5 ms