RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 CACNA1SQ13698 1873 aa14.4□□□□□ -0.1
PDPN-211ENST00000617617 GSPT1P15170 499 aaKnown RBP14.4□□□□□ -0.1
PDPN-211ENST00000617617 IGHMBP2P38935 993 aaKnown RBP14.4□□□□□ -0.1
PDPN-211ENST00000617617 LDHAL6AQ6ZMR3 332 aa14.4□□□□□ -0.1
PDPN-211ENST00000617617 ZNF512BQ96KM6 892 aaPredicted RBP14.4□□□□□ -0.1
PDPN-211ENST00000617617 PUS3Q9BZE2 481 aaKnown RBP14.4□□□□□ -0.1
PDPN-211ENST00000617617 ECHDC1Q9NTX5 307 aa14.4□□□□□ -0.1
PDPN-211ENST00000617617 CEP126Q9P2H0 1117 aa14.4□□□□□ -0.1
PDPN-211ENST00000617617 C10orf71Q711Q0 1435 aa14.4□□□□□ -0.1
PDPN-211ENST00000617617 FAM177BA6PVY3 158 aa14.4□□□□□ -0.1
PDPN-211ENST00000617617 ERC2O15083 957 aa14.4□□□□□ -0.1
PDPN-211ENST00000617617 EIF5BO60841 1220 aaKnown RBP14.4□□□□□ -0.1
PDPN-211ENST00000617617 IFIT2P09913 472 aaKnown RBP14.4□□□□□ -0.1
PDPN-211ENST00000617617 GLRX3O76003 335 aaKnown RBP14.39□□□□□ -0.11
PDPN-211ENST00000617617 FGFR2P21802 821 aa14.39□□□□□ -0.11
PDPN-211ENST00000617617 TMC4Q7Z404 712 aa14.39□□□□□ -0.11
PDPN-211ENST00000617617 AACSQ86V21 672 aa14.39□□□□□ -0.11
PDPN-211ENST00000617617 CRAMP1Q96RY5 1269 aa14.39□□□□□ -0.11
PDPN-211ENST00000617617 PARP3Q9Y6F1 533 aa14.39□□□□□ -0.11
PDPN-211ENST00000617617 RFX7Q2KHR2 1363 aa14.39□□□□□ -0.11
PDPN-211ENST00000617617 APBB1O00213 710 aa14.39□□□□□ -0.11
PDPN-211ENST00000617617 PDE8BO95263 885 aa14.39□□□□□ -0.11
PDPN-211ENST00000617617 ANKRD18AQ8IVF6 992 aa14.39□□□□□ -0.11
PDPN-211ENST00000617617 SEC31BQ9NQW1 1179 aa14.39□□□□□ -0.11
PDPN-211ENST00000617617 ATP5JP18859 108 aa14.38□□□□□ -0.11
PDPN-211ENST00000617617 MMP10P09238 476 aa14.38□□□□□ -0.11
PDPN-211ENST00000617617 GRAPQ13588 217 aa14.38□□□□□ -0.11
PDPN-211ENST00000617617 GRAPLQ8TC17 118 aaPredicted RBP14.38□□□□□ -0.11
PDPN-211ENST00000617617 CNNM1Q9NRU3 951 aa14.37□□□□□ -0.11
PDPN-211ENST00000617617 DBNLQ9UJU6 430 aaKnown RBP14.37□□□□□ -0.11
PDPN-211ENST00000617617 PDE6BP35913 854 aa14.37□□□□□ -0.11
PDPN-211ENST00000617617 DDX46Q7L014 1031 aaKnown RBP14.37□□□□□ -0.11
PDPN-211ENST00000617617 MPHOSPH8Q99549 860 aa14.37□□□□□ -0.11
PDPN-211ENST00000617617 DUOX1Q9NRD9 1551 aa14.37□□□□□ -0.11
PDPN-211ENST00000617617 RPS8P62241 208 aaKnown RBP14.37□□□□□ -0.11
PDPN-211ENST00000617617 PUM3Q15397 648 aaKnown RBP14.37□□□□□ -0.11
PDPN-211ENST00000617617 RBM17Q96I25 401 aaKnown RBP14.37□□□□□ -0.11
PDPN-211ENST00000617617 METTL24Q5JXM2 366 aa14.36□□□□□ -0.11
PDPN-211ENST00000617617 ANKRD2Q9GZV1 360 aa14.36□□□□□ -0.11
PDPN-211ENST00000617617 A0A1B0GUL7 405 aa14.36□□□□□ -0.11
PDPN-211ENST00000617617 LPIN2Q92539 896 aa14.35□□□□□ -0.11
PDPN-211ENST00000617617 CCDC85AQ96PX6 553 aaPredicted RBP14.35□□□□□ -0.11
PDPN-211ENST00000617617 MSH5O43196 834 aa14.35□□□□□ -0.11
PDPN-211ENST00000617617 BBOX1O75936 387 aa14.35□□□□□ -0.11
PDPN-211ENST00000617617 SDSP20132 328 aa14.35□□□□□ -0.11
PDPN-211ENST00000617617 UBE4AQ14139 1066 aa14.35□□□□□ -0.11
PDPN-211ENST00000617617 ATP2B3Q16720 1220 aa14.35□□□□□ -0.11
PDPN-211ENST00000617617 MAST2Q6P0Q8 1798 aa14.35□□□□□ -0.11
PDPN-211ENST00000617617 CDC45O75419 566 aa14.34□□□□□ -0.11
PDPN-211ENST00000617617 NPR1P16066 1061 aa14.34□□□□□ -0.11
PDPN-211ENST00000617617 STYK1Q6J9G0 422 aa14.34□□□□□ -0.11
PDPN-211ENST00000617617 C15orf52Q6ZUT6 534 aaKnown RBP14.34□□□□□ -0.11
PDPN-211ENST00000617617 CELF1Q92879 486 aaKnown RBP14.34□□□□□ -0.11
PDPN-211ENST00000617617 TLR7Q9NYK1 1049 aaKnown RBP14.34□□□□□ -0.11
PDPN-211ENST00000617617 MINPP1Q9UNW1 487 aa14.34□□□□□ -0.11
PDPN-211ENST00000617617 SRGNP10124 158 aa14.34□□□□□ -0.11
PDPN-211ENST00000617617 CHRNDQ07001 517 aa14.34□□□□□ -0.11
PDPN-211ENST00000617617 RPGRQ92834 1020 aaKnown RBP14.34□□□□□ -0.11
PDPN-211ENST00000617617 HAUS7Q99871 368 aa14.34□□□□□ -0.11
PDPN-211ENST00000617617 CCDC8Q9H0W5 538 aaPredicted RBP14.34□□□□□ -0.11
PDPN-211ENST00000617617 IRS2Q9Y4H2 1338 aa14.34□□□□□ -0.11
PDPN-211ENST00000617617 DBNDD2Q9BQY9 259 aa14.33□□□□□ -0.11
PDPN-211ENST00000617617 SLX4Q8IY92 1834 aa14.33□□□□□ -0.12
PDPN-211ENST00000617617 NPHP1O15259 732 aa14.33□□□□□ -0.12
PDPN-211ENST00000617617 ARID4AP29374 1257 aaPredicted RBP14.33□□□□□ -0.12
PDPN-211ENST00000617617 XAGE2Q96GT9 111 aa14.33□□□□□ -0.12
PDPN-211ENST00000617617 MYO5AQ9Y4I1 1855 aaKnown RBP14.33□□□□□ -0.12
PDPN-211ENST00000617617 SLC5A1P13866 664 aa14.33□□□□□ -0.12
PDPN-211ENST00000617617 EVI5LQ96CN4 794 aa14.33□□□□□ -0.12
PDPN-211ENST00000617617 PODXL2Q9NZ53 605 aa14.33□□□□□ -0.12
PDPN-211ENST00000617617 PDS5AQ29RF7 1337 aaKnown RBP14.32□□□□□ -0.12
PDPN-211ENST00000617617 EPB41L2O43491 1005 aaKnown RBP14.32□□□□□ -0.12
PDPN-211ENST00000617617 CNTROBQ8N137 903 aa14.32□□□□□ -0.12
PDPN-211ENST00000617617 MTFR1LQ9H019 292 aa14.32□□□□□ -0.12
PDPN-211ENST00000617617 TSHZ2Q9NRE2 1034 aa14.32□□□□□ -0.12
PDPN-211ENST00000617617 ZNF804BA4D1E1 1349 aa14.32□□□□□ -0.12
PDPN-211ENST00000617617 ZNF646O15015 1829 aaPredicted RBP14.32□□□□□ -0.12
PDPN-211ENST00000617617 CCDC88AQ3V6T2 1871 aa14.32□□□□□ -0.12
PDPN-211ENST00000617617 MASTLQ96GX5 879 aa14.32□□□□□ -0.12
PDPN-211ENST00000617617 PSME4Q14997 1843 aa14.32□□□□□ -0.12
PDPN-211ENST00000617617 ARFGEF1Q9Y6D6 1849 aa14.31□□□□□ -0.12
PDPN-211ENST00000617617 IGSF3O75054 1194 aa14.31□□□□□ -0.12
PDPN-211ENST00000617617 ALDH1B1P30837 517 aa14.31□□□□□ -0.12
PDPN-211ENST00000617617 LEMD3Q9Y2U8 911 aa14.31□□□□□ -0.12
PDPN-211ENST00000617617 UQCRFS1P1P0C7P4 283 aa14.31□□□□□ -0.12
PDPN-211ENST00000617617 TIMM10P62072 90 aa14.31□□□□□ -0.12
PDPN-211ENST00000617617 CCDC158Q5M9N0 1113 aa14.31□□□□□ -0.12
PDPN-211ENST00000617617 SP8Q8IXZ3 490 aa14.31□□□□□ -0.12
PDPN-211ENST00000617617 SNRKQ9NRH2 765 aa14.31□□□□□ -0.12
PDPN-211ENST00000617617 SNED1Q8TER0 1413 aa14.3□□□□□ -0.12
PDPN-211ENST00000617617 IFIT1P09914 478 aaKnown RBP14.3□□□□□ -0.12
PDPN-211ENST00000617617 TBC1D9Q6ZT07 1266 aa14.3□□□□□ -0.12
PDPN-211ENST00000617617 HIP1O00291 1037 aa14.3□□□□□ -0.12
PDPN-211ENST00000617617 MSL1Q68DK7 614 aa14.3□□□□□ -0.12
PDPN-211ENST00000617617 CASC1Q6TDU7 716 aa14.29□□□□□ -0.12
PDPN-211ENST00000617617 SGIP1Q9BQI5 828 aa14.29□□□□□ -0.12
PDPN-211ENST00000617617 XDHP47989 1333 aa14.29□□□□□ -0.12
PDPN-211ENST00000617617 SEMA3EO15041 775 aa14.29□□□□□ -0.12
PDPN-211ENST00000617617 TSHZ3Q63HK5 1081 aa14.29□□□□□ -0.12
PDPN-211ENST00000617617 CCDC24Q8N4L8 307 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms