RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CWC25Q9NXE8 425 aaPredicted RBP24.42■■□□□ 1.5
CDX1-202ENST00000616154 PODXL2Q9NZ53 605 aa24.42■■□□□ 1.5
CDX1-202ENST00000616154 ZBTB12Q9Y330 459 aaPredicted RBP24.42■■□□□ 1.5
CDX1-202ENST00000616154 ECE2O60344 883 aa24.41■■□□□ 1.5
CDX1-202ENST00000616154 CDC37L1Q7L3B6 337 aa24.41■■□□□ 1.5
CDX1-202ENST00000616154 SAPCD2Q86UD0 394 aa24.41■■□□□ 1.5
CDX1-202ENST00000616154 GPR101Q96P66 508 aaPredicted RBP24.41■■□□□ 1.5
CDX1-202ENST00000616154 SEC31BQ9NQW1 1179 aa24.41■■□□□ 1.5
CDX1-202ENST00000616154 MYH3P11055 1940 aa24.4■■□□□ 1.5
CDX1-202ENST00000616154 RTL9Q8NET4 1388 aa24.4■■□□□ 1.5
CDX1-202ENST00000616154 PDE8AO60658 829 aa24.4■■□□□ 1.5
CDX1-202ENST00000616154 CCDC152Q4G0S7 254 aa24.4■■□□□ 1.5
CDX1-202ENST00000616154 POLR2AP24928 1970 aaKnown RBP24.4■■□□□ 1.5
CDX1-202ENST00000616154 PSME4Q14997 1843 aa24.4■■□□□ 1.5
CDX1-202ENST00000616154 RPS12P25398 132 aaKnown RBP24.39■■□□□ 1.5
CDX1-202ENST00000616154 DOK7Q18PE1 504 aa24.39■■□□□ 1.5
CDX1-202ENST00000616154 HHIPL1Q96JK4 782 aa24.39■■□□□ 1.5
CDX1-202ENST00000616154 GRM1Q13255 1194 aa24.38■■□□□ 1.49
CDX1-202ENST00000616154 WWC1Q8IX03 1113 aa24.38■■□□□ 1.49
CDX1-202ENST00000616154 TSPYL6Q8N831 410 aa24.38■■□□□ 1.49
CDX1-202ENST00000616154 MAP2K2P36507 400 aa24.37■■□□□ 1.49
CDX1-202ENST00000616154 SAMD7Q7Z3H4 446 aa24.37■■□□□ 1.49
CDX1-202ENST00000616154 ZC3H12CQ9C0D7 883 aaKnown RBP24.37■■□□□ 1.49
CDX1-202ENST00000616154 MAP3K2Q9Y2U5 619 aa24.37■■□□□ 1.49
CDX1-202ENST00000616154 IL16Q14005 1332 aa24.37■■□□□ 1.49
CDX1-202ENST00000616154 UFL1O94874 794 aa24.36■■□□□ 1.49
CDX1-202ENST00000616154 JARID2Q92833 1246 aaPredicted RBP24.36■■□□□ 1.49
CDX1-202ENST00000616154 BEGAINQ9BUH8 593 aa24.36■■□□□ 1.49
CDX1-202ENST00000616154 KCNQ5Q9NR82 932 aa24.36■■□□□ 1.49
CDX1-202ENST00000616154 ANKIB1Q9P2G1 1089 aa24.36■■□□□ 1.49
CDX1-202ENST00000616154 GGA1Q9UJY5 639 aa24.36■■□□□ 1.49
CDX1-202ENST00000616154 TBC1D10BQ4KMP7 808 aaPredicted RBP24.35■■□□□ 1.49
CDX1-202ENST00000616154 KSR2Q6VAB6 950 aa24.35■■□□□ 1.49
CDX1-202ENST00000616154 TSR2Q969E8 191 aaKnown RBP24.35■■□□□ 1.49
CDX1-202ENST00000616154 ZNF408Q9H9D4 720 aa24.35■■□□□ 1.49
CDX1-202ENST00000616154 AOC2O75106 756 aa24.35■■□□□ 1.49
CDX1-202ENST00000616154 EGFRP00533 1210 aa24.35■■□□□ 1.49
CDX1-202ENST00000616154 USP48Q86UV5 1035 aa24.35■■□□□ 1.49
CDX1-202ENST00000616154 ZNF609O15014 1411 aa24.34■■□□□ 1.49
CDX1-202ENST00000616154 SPEF2Q9C093 1822 aa24.34■■□□□ 1.49
CDX1-202ENST00000616154 IGKV5-2P06315 115 aa24.34■■□□□ 1.49
CDX1-202ENST00000616154 VIL1P09327 827 aaKnown RBP24.34■■□□□ 1.49
CDX1-202ENST00000616154 CCDC85AQ96PX6 553 aaPredicted RBP24.34■■□□□ 1.49
CDX1-202ENST00000616154 STK31Q9BXU1 1019 aa24.34■■□□□ 1.49
CDX1-202ENST00000616154 CACNA1FO60840 1977 aa24.33■■□□□ 1.48
CDX1-202ENST00000616154 PI4KAP2A4QPH2 592 aa24.33■■□□□ 1.48
CDX1-202ENST00000616154 ANKRD18AQ8IVF6 992 aa24.33■■□□□ 1.48
CDX1-202ENST00000616154 PI4KAP1Q8N8J0 262 aa24.33■■□□□ 1.48
CDX1-202ENST00000616154 XDHP47989 1333 aa24.32■■□□□ 1.48
CDX1-202ENST00000616154 CTSWP56202 376 aa24.32■■□□□ 1.48
CDX1-202ENST00000616154 G3V3G9 751 aa24.31■■□□□ 1.48
CDX1-202ENST00000616154 NEXNQ0ZGT2 675 aa24.31■■□□□ 1.48
CDX1-202ENST00000616154 DCAF8Q5TAQ9 597 aa24.31■■□□□ 1.48
CDX1-202ENST00000616154 KRT26Q7Z3Y9 468 aa24.31■■□□□ 1.48
CDX1-202ENST00000616154 CDC5LQ99459 802 aaKnown RBP24.31■■□□□ 1.48
CDX1-202ENST00000616154 KIF4BQ2VIQ3 1234 aa24.3■■□□□ 1.48
CDX1-202ENST00000616154 TWISTNBQ3B726 338 aaPredicted RBP24.3■■□□□ 1.48
CDX1-202ENST00000616154 RBM26Q5T8P6 1007 aaKnown RBP24.3■■□□□ 1.48
CDX1-202ENST00000616154 DCPSQ96C86 337 aaKnown RBP24.3■■□□□ 1.48
CDX1-202ENST00000616154 CA12O43570 354 aa24.29■■□□□ 1.48
CDX1-202ENST00000616154 ATP2B4P23634 1241 aa24.29■■□□□ 1.48
CDX1-202ENST00000616154 BRPF1P55201 1214 aaPredicted RBP24.29■■□□□ 1.48
CDX1-202ENST00000616154 DLK2Q6UY11 383 aa24.29■■□□□ 1.48
CDX1-202ENST00000616154 TTLL11Q8NHH1 800 aa24.29■■□□□ 1.48
CDX1-202ENST00000616154 NEURL1BA8MQ27 555 aa24.28■■□□□ 1.48
CDX1-202ENST00000616154 HUNKP57058 714 aa24.28■■□□□ 1.48
CDX1-202ENST00000616154 RSBN1LQ6PCB5 846 aaPredicted RBP24.28■■□□□ 1.48
CDX1-202ENST00000616154 WDR63Q8IWG1 891 aa24.28■■□□□ 1.48
CDX1-202ENST00000616154 AGBL3Q8NEM8 1001 aa24.28■■□□□ 1.48
CDX1-202ENST00000616154 ADM5C9JUS6 153 aa24.27■■□□□ 1.48
CDX1-202ENST00000616154 ZNF280AP59817 542 aaPredicted RBP24.27■■□□□ 1.48
CDX1-202ENST00000616154 CWF19L2Q2TBE0 894 aaKnown RBP24.27■■□□□ 1.48
CDX1-202ENST00000616154 G2E3Q7L622 706 aa24.27■■□□□ 1.48
CDX1-202ENST00000616154 GREM2Q9H772 168 aa24.27■■□□□ 1.48
CDX1-202ENST00000616154 ZNF646O15015 1829 aaPredicted RBP24.26■■□□□ 1.47
CDX1-202ENST00000616154 NOGQ13253 232 aa24.26■■□□□ 1.47
CDX1-202ENST00000616154 ABHD8Q96I13 439 aa24.26■■□□□ 1.47
CDX1-202ENST00000616154 GBA2Q9HCG7 927 aaPredicted RBP24.26■■□□□ 1.47
CDX1-202ENST00000616154 BSDC1Q9NW68 430 aaPredicted RBP24.26■■□□□ 1.47
CDX1-202ENST00000616154 MED23Q9ULK4 1368 aa24.25■■□□□ 1.47
CDX1-202ENST00000616154 H7C1W4 665 aa24.25■■□□□ 1.47
CDX1-202ENST00000616154 SLC4A2P04920 1241 aa24.25■■□□□ 1.47
CDX1-202ENST00000616154 PODNQ7Z5L7 613 aa24.25■■□□□ 1.47
CDX1-202ENST00000616154 GGA3Q9NZ52 723 aa24.25■■□□□ 1.47
CDX1-202ENST00000616154 TSKSQ9UJT2 592 aa24.25■■□□□ 1.47
CDX1-202ENST00000616154 MINPP1Q9UNW1 487 aa24.25■■□□□ 1.47
CDX1-202ENST00000616154 SULF1Q8IWU6 871 aa24.24■■□□□ 1.47
CDX1-202ENST00000616154 C2orf69Q8N8R5 385 aa24.24■■□□□ 1.47
CDX1-202ENST00000616154 GMLQ99445 158 aa24.24■■□□□ 1.47
CDX1-202ENST00000616154 CASP8AP2Q9UKL3 1982 aa24.23■■□□□ 1.47
CDX1-202ENST00000616154 RGMBQ6NW40 437 aa24.23■■□□□ 1.47
CDX1-202ENST00000616154 UBE3BQ7Z3V4 1068 aa24.23■■□□□ 1.47
CDX1-202ENST00000616154 ASTN2O75129 1339 aaPredicted RBP24.22■■□□□ 1.47
CDX1-202ENST00000616154 FANCIQ9NVI1 1328 aa24.22■■□□□ 1.47
CDX1-202ENST00000616154 USP17L3A6NCW0 530 aa24.22■■□□□ 1.47
CDX1-202ENST00000616154 USP17L4A6NCW7 530 aa24.22■■□□□ 1.47
CDX1-202ENST00000616154 FLIIQ13045 1269 aa24.22■■□□□ 1.47
CDX1-202ENST00000616154 USP17L1Q7RTZ2 530 aa24.22■■□□□ 1.47
CDX1-202ENST00000616154 PLA2G12BQ9BX93 195 aa24.22■■□□□ 1.47
CDX1-202ENST00000616154 WTIPA6NIX2 430 aaPredicted RBP24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms