RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 HYAL3O43820 417 aaPredicted RBP7.9□□□□□ -1.14
LINC00540-201ENST00000611481 RAPGEF3O95398 923 aa7.9□□□□□ -1.14
LINC00540-201ENST00000611481 EPB42P16452 691 aa7.9□□□□□ -1.14
LINC00540-201ENST00000611481 UBTFP17480 764 aaKnown RBP7.9□□□□□ -1.14
LINC00540-201ENST00000611481 RASA1P20936 1047 aa7.9□□□□□ -1.14
LINC00540-201ENST00000611481 SEC13P55735 322 aa7.9□□□□□ -1.14
LINC00540-201ENST00000611481 FAM35AQ86V20 835 aa7.9□□□□□ -1.14
LINC00540-201ENST00000611481 FLIIQ13045 1269 aa7.89□□□□□ -1.15
LINC00540-201ENST00000611481 MSL1Q68DK7 614 aa7.89□□□□□ -1.15
LINC00540-201ENST00000611481 MAP3K6O95382 1288 aa7.88□□□□□ -1.15
LINC00540-201ENST00000611481 CPB1P15086 417 aa7.88□□□□□ -1.15
LINC00540-201ENST00000611481 FBXO11Q86XK2 927 aa7.88□□□□□ -1.15
LINC00540-201ENST00000611481 WFDC12Q8WWY7 111 aa7.88□□□□□ -1.15
LINC00540-201ENST00000611481 FRRS1LQ9P0K9 344 aa7.88□□□□□ -1.15
LINC00540-201ENST00000611481 DMGDHQ9UI17 866 aaKnown RBP7.88□□□□□ -1.15
LINC00540-201ENST00000611481 PREX1Q8TCU6 1659 aa7.88□□□□□ -1.15
LINC00540-201ENST00000611481 CARMIL2Q6F5E8 1435 aa7.87□□□□□ -1.15
LINC00540-201ENST00000611481 HINFPQ9BQA5 517 aa7.87□□□□□ -1.15
LINC00540-201ENST00000611481 BCS1LQ9Y276 419 aa7.87□□□□□ -1.15
LINC00540-201ENST00000611481 IREB2P48200 963 aaKnown RBP7.86□□□□□ -1.15
LINC00540-201ENST00000611481 PIP4K2BP78356 416 aa7.86□□□□□ -1.15
LINC00540-201ENST00000611481 MLECQ14165 292 aa7.86□□□□□ -1.15
LINC00540-201ENST00000611481 WFDC8Q8IUA0 241 aa7.86□□□□□ -1.15
LINC00540-201ENST00000611481 KRTAP1-3Q8IUG1 177 aa7.86□□□□□ -1.15
LINC00540-201ENST00000611481 INPP5BP32019 993 aa7.85□□□□□ -1.15
LINC00540-201ENST00000611481 GRIK5Q16478 980 aa7.85□□□□□ -1.15
LINC00540-201ENST00000611481 ELMSAN1Q6PJG2 1045 aa7.85□□□□□ -1.15
LINC00540-201ENST00000611481 LARP1Q6PKG0 1096 aaKnown RBP7.85□□□□□ -1.15
LINC00540-201ENST00000611481 IGF2-ASQ6U949 168 aa7.85□□□□□ -1.15
LINC00540-201ENST00000611481 TRPM4Q8TD43 1214 aa7.85□□□□□ -1.15
LINC00540-201ENST00000611481 TTC9Q92623 222 aa7.85□□□□□ -1.15
LINC00540-201ENST00000611481 LPIN3Q9BQK8 851 aa7.85□□□□□ -1.15
LINC00540-201ENST00000611481 C11orf16Q9NQ32 467 aa7.85□□□□□ -1.15
LINC00540-201ENST00000611481 TFIP11Q9UBB9 837 aaKnown RBP7.85□□□□□ -1.15
LINC00540-201ENST00000611481 POGZQ7Z3K3 1410 aa7.85□□□□□ -1.15
LINC00540-201ENST00000611481 IGFBP4P22692 258 aa7.84□□□□□ -1.15
LINC00540-201ENST00000611481 NOS3P29474 1203 aa7.84□□□□□ -1.15
LINC00540-201ENST00000611481 CEBPAP49715 358 aaPredicted RBP7.84□□□□□ -1.15
LINC00540-201ENST00000611481 IDH3AP50213 366 aa7.84□□□□□ -1.15
LINC00540-201ENST00000611481 PERM1Q5SV97 790 aa7.84□□□□□ -1.15
LINC00540-201ENST00000611481 DHX32Q7L7V1 743 aaKnown RBP7.84□□□□□ -1.15
LINC00540-201ENST00000611481 RNF112Q9ULX5 631 aa7.84□□□□□ -1.15
LINC00540-201ENST00000611481 MAFBQ9Y5Q3 323 aaPredicted RBP7.84□□□□□ -1.15
LINC00540-201ENST00000611481 GRNP28799 593 aaKnown RBP7.83□□□□□ -1.16
LINC00540-201ENST00000611481 ARID4AP29374 1257 aaPredicted RBP7.83□□□□□ -1.16
LINC00540-201ENST00000611481 GPLD1P80108 840 aa7.83□□□□□ -1.16
LINC00540-201ENST00000611481 KRT25Q7Z3Z0 450 aa7.83□□□□□ -1.16
LINC00540-201ENST00000611481 KRTAP4-12Q9BQ66 201 aa7.83□□□□□ -1.16
LINC00540-201ENST00000611481 ZFATQ9P243 1243 aa7.83□□□□□ -1.16
LINC00540-201ENST00000611481 RGS17Q9UGC6 210 aaPredicted RBP7.83□□□□□ -1.16
LINC00540-201ENST00000611481 UHRF1BP1Q6BDS2 1440 aa7.83□□□□□ -1.16
LINC00540-201ENST00000611481 TTC37Q6PGP7 1564 aa7.83□□□□□ -1.16
LINC00540-201ENST00000611481 ZNF335Q9H4Z2 1342 aaPredicted RBP7.82□□□□□ -1.16
LINC00540-201ENST00000611481 FER1L4A9Z1Z3 1794 aa7.82□□□□□ -1.16
LINC00540-201ENST00000611481 ZBTB42B2RXF5 422 aa7.82□□□□□ -1.16
LINC00540-201ENST00000611481 ARSDP51689 593 aa7.82□□□□□ -1.16
LINC00540-201ENST00000611481 KLK14Q9P0G3 267 aa7.82□□□□□ -1.16
LINC00540-201ENST00000611481 ARHGEF40Q8TER5 1519 aa7.82□□□□□ -1.16
LINC00540-201ENST00000611481 FANCAO15360 1455 aa7.81□□□□□ -1.16
LINC00540-201ENST00000611481 FRMPD1Q5SYB0 1578 aa7.81□□□□□ -1.16
LINC00540-201ENST00000611481 RARAP10276 462 aa7.81□□□□□ -1.16
LINC00540-201ENST00000611481 TARSP26639 723 aaKnown RBP7.81□□□□□ -1.16
LINC00540-201ENST00000611481 MLLT1Q03111 559 aaPredicted RBP7.81□□□□□ -1.16
LINC00540-201ENST00000611481 PLAURQ03405 335 aa7.81□□□□□ -1.16
LINC00540-201ENST00000611481 DPYDQ12882 1025 aa7.81□□□□□ -1.16
LINC00540-201ENST00000611481 LCE3BQ5TA77 95 aa7.81□□□□□ -1.16
LINC00540-201ENST00000611481 IFT43Q96FT9 208 aa7.81□□□□□ -1.16
LINC00540-201ENST00000611481 LGR5O75473 907 aa7.8□□□□□ -1.16
LINC00540-201ENST00000611481 SASH3O75995 380 aa7.8□□□□□ -1.16
LINC00540-201ENST00000611481 PTK7Q13308 1070 aa7.8□□□□□ -1.16
LINC00540-201ENST00000611481 DGKZQ13574 1117 aa7.8□□□□□ -1.16
LINC00540-201ENST00000611481 PRR23CQ6ZRP0 262 aa7.8□□□□□ -1.16
LINC00540-201ENST00000611481 GLMNQ92990 594 aa7.8□□□□□ -1.16
LINC00540-201ENST00000611481 MEGF10Q96KG7 1140 aa7.8□□□□□ -1.16
LINC00540-201ENST00000611481 SMG9Q9H0W8 520 aaKnown RBP7.8□□□□□ -1.16
LINC00540-201ENST00000611481 PHLDB1Q86UU1 1377 aa7.8□□□□□ -1.16
LINC00540-201ENST00000611481 DLL1O00548 723 aa7.79□□□□□ -1.16
LINC00540-201ENST00000611481 DEAF1O75398 565 aaPredicted RBP7.79□□□□□ -1.16
LINC00540-201ENST00000611481 MICAL2O94851 1124 aa7.79□□□□□ -1.16
LINC00540-201ENST00000611481 NRLP54845 237 aa7.79□□□□□ -1.16
LINC00540-201ENST00000611481 CRTC2Q53ET0 693 aaPredicted RBP7.79□□□□□ -1.16
LINC00540-201ENST00000611481 SLC51AQ86UW1 340 aa7.79□□□□□ -1.16
LINC00540-201ENST00000611481 C11orf91Q3C1V1 193 aa7.78□□□□□ -1.16
LINC00540-201ENST00000611481 ANKMY2Q8IV38 441 aa7.78□□□□□ -1.16
LINC00540-201ENST00000611481 VTI1AQ96AJ9 217 aa7.78□□□□□ -1.16
LINC00540-201ENST00000611481 AKTIPQ9H8T0 292 aa7.78□□□□□ -1.16
LINC00540-201ENST00000611481 TLR7Q9NYK1 1049 aaKnown RBP7.78□□□□□ -1.16
LINC00540-201ENST00000611481 SIGLEC1Q9BZZ2 1709 aa7.78□□□□□ -1.16
LINC00540-201ENST00000611481 AKNAQ7Z591 1439 aa7.78□□□□□ -1.16
LINC00540-201ENST00000611481 TOM1O60784 492 aa7.77□□□□□ -1.17
LINC00540-201ENST00000611481 PRKCSHP14314 528 aaPredicted RBP7.77□□□□□ -1.17
LINC00540-201ENST00000611481 EIF2AK2P19525 551 aaKnown RBP7.77□□□□□ -1.17
LINC00540-201ENST00000611481 HFE2Q6ZVN8 426 aa7.77□□□□□ -1.17
LINC00540-201ENST00000611481 DZIP1LQ8IYY4 767 aaKnown RBP7.77□□□□□ -1.17
LINC00540-201ENST00000611481 QTRT2Q9H974 415 aaKnown RBP7.77□□□□□ -1.17
LINC00540-201ENST00000611481 SETD1AO15047 1707 aaKnown RBP7.77□□□□□ -1.17
LINC00540-201ENST00000611481 DISP1Q96F81 1524 aa7.77□□□□□ -1.17
LINC00540-201ENST00000611481 NCOA1Q15788 1441 aa7.77□□□□□ -1.17
LINC00540-201ENST00000611481 FAM196BA6NMK8 535 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L15C9J2P7 530 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms