RNA–Protein interactions for RNA: ENST00000604967.1

TUBE1-210, Transcript of tubulin epsilon 1, human

TSL 5

Gene TUBE1, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TUBE1-210	ENST00000604967	MINPP1	Q9UNW1	487 aa		13.61	□□□□□ -0.23
TUBE1-210	ENST00000604967	PCNT	O95613	3336 aa		13.6	□□□□□ -0.23
TUBE1-210	ENST00000604967	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.6	□□□□□ -0.23
TUBE1-210	ENST00000604967	KLRK1	P26718	216 aa		13.6	□□□□□ -0.23
TUBE1-210	ENST00000604967	GMPS	P49915	693 aa	Predicted RBP	13.6	□□□□□ -0.23
TUBE1-210	ENST00000604967	APLP1	P51693	650 aa		13.6	□□□□□ -0.23
TUBE1-210	ENST00000604967	HIRA	P54198	1017 aa	Predicted RBP	13.6	□□□□□ -0.23
TUBE1-210	ENST00000604967	TXNRD3	Q86VQ6	643 aa		13.6	□□□□□ -0.23
TUBE1-210	ENST00000604967	SUPT20H	Q8NEM7	779 aa		13.6	□□□□□ -0.23
TUBE1-210	ENST00000604967	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.6	□□□□□ -0.23
TUBE1-210	ENST00000604967	PASK	Q96RG2	1323 aa		13.6	□□□□□ -0.23
TUBE1-210	ENST00000604967	IQCA1L	A6NCM1	817 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	C6orf229	H3BNL8	230 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	GRM8	O00222	908 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	PSMD14	O00487	310 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	UFL1	O94874	794 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	EGFR	P00533	1210 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	ITGA6	P23229	1130 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	WASHC4	Q2M389	1173 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	EAPP	Q56P03	285 aa	Predicted RBP	13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	MAP1S	Q66K74	1059 aa	Predicted RBP	13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	SLC4A10	Q6U841	1118 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	ANKRD18A	Q8IVF6	992 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	SUCLG2	Q96I99	432 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	BSDC1	Q9NW68	430 aa	Predicted RBP	13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	GPRC5D	Q9NZD1	345 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	ZNF646	O15015	1829 aa	Predicted RBP	13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	IRS2	Q9Y4H2	1338 aa		13.59	□□□□□ -0.23
TUBE1-210	ENST00000604967	ECE2	O60344	883 aa		13.58	□□□□□ -0.24
TUBE1-210	ENST00000604967	CIAPIN1	Q6FI81	312 aa		13.58	□□□□□ -0.24
TUBE1-210	ENST00000604967	LDHD	Q86WU2	507 aa		13.58	□□□□□ -0.24
TUBE1-210	ENST00000604967	TRPM4	Q8TD43	1214 aa		13.58	□□□□□ -0.24
TUBE1-210	ENST00000604967	ZNF594	Q96JF6	807 aa	Predicted RBP	13.58	□□□□□ -0.24
TUBE1-210	ENST00000604967	UTY	O14607	1347 aa		13.58	□□□□□ -0.24
TUBE1-210	ENST00000604967	ALDH1L1	O75891	902 aa		13.57	□□□□□ -0.24
TUBE1-210	ENST00000604967	LMBR1L	Q6UX01	489 aa		13.57	□□□□□ -0.24
TUBE1-210	ENST00000604967	DLK2	Q6UY11	383 aa		13.57	□□□□□ -0.24
TUBE1-210	ENST00000604967	ANKRD44	Q8N8A2	993 aa		13.57	□□□□□ -0.24
TUBE1-210	ENST00000604967	TMX4	Q9H1E5	349 aa	Predicted RBP	13.57	□□□□□ -0.24
TUBE1-210	ENST00000604967	ANKIB1	Q9P2G1	1089 aa		13.57	□□□□□ -0.24
TUBE1-210	ENST00000604967	GGA1	Q9UJY5	639 aa		13.57	□□□□□ -0.24
TUBE1-210	ENST00000604967	TNN	Q9UQP3	1299 aa		13.57	□□□□□ -0.24
TUBE1-210	ENST00000604967		A0A1B0GUL6	1792 aa		13.56	□□□□□ -0.24
TUBE1-210	ENST00000604967	HSP90B1	P14625	803 aa	Known RBP	13.56	□□□□□ -0.24
TUBE1-210	ENST00000604967	CDC5L	Q99459	802 aa	Known RBP	13.56	□□□□□ -0.24
TUBE1-210	ENST00000604967	SRCIN1	Q9C0H9	1055 aa		13.56	□□□□□ -0.24
TUBE1-210	ENST00000604967	USP44	Q9H0E7	712 aa		13.56	□□□□□ -0.24
TUBE1-210	ENST00000604967	XDH	P47989	1333 aa		13.56	□□□□□ -0.24
TUBE1-210	ENST00000604967	RARS	P54136	660 aa	Known RBP	13.55	□□□□□ -0.24
TUBE1-210	ENST00000604967	ALDH1L2	Q3SY69	923 aa		13.55	□□□□□ -0.24
TUBE1-210	ENST00000604967	HELB	Q8NG08	1087 aa	Predicted RBP	13.55	□□□□□ -0.24
TUBE1-210	ENST00000604967	MXD3	Q9BW11	206 aa		13.55	□□□□□ -0.24
TUBE1-210	ENST00000604967	TRAF5	O00463	557 aa		13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	TAF5L	O75529	589 aa		13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	CCT4	P50991	539 aa	Known RBP	13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	CHRND	Q07001	517 aa		13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	CNTROB	Q8N137	903 aa		13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	KLRG1	Q96E93	195 aa		13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	GML	Q99445	158 aa		13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	PUS3	Q9BZE2	481 aa	Known RBP	13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	BICC1	Q9H694	974 aa	Known RBP	13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	SMC4	Q9NTJ3	1288 aa		13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	NOB1	Q9ULX3	412 aa	Known RBP	13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	ASTN2	O75129	1339 aa	Predicted RBP	13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	PTPRC	P08575	1304 aa		13.54	□□□□□ -0.24
TUBE1-210	ENST00000604967	VIL1	P09327	827 aa	Known RBP	13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	ATP2B4	P23634	1241 aa		13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	RABL6	Q3YEC7	729 aa	Predicted RBP	13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	SAMD7	Q7Z3H4	446 aa		13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	PNMA8A	Q86V59	439 aa	Predicted RBP	13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	MICALL2	Q8IY33	904 aa		13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	EYA3	Q99504	573 aa		13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	ADARB2	Q9NS39	739 aa	Known RBP	13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	CNOT7	Q9UIV1	285 aa	Known RBP	13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	CLEC11A	Q9Y240	323 aa		13.53	□□□□□ -0.24
TUBE1-210	ENST00000604967	LMOD1	P29536	600 aa	Predicted RBP	13.52	□□□□□ -0.25
TUBE1-210	ENST00000604967	BRPF1	P55201	1214 aa	Predicted RBP	13.52	□□□□□ -0.25
TUBE1-210	ENST00000604967	TNIP1	Q15025	636 aa		13.52	□□□□□ -0.25
TUBE1-210	ENST00000604967	USP50	Q70EL3	339 aa	Predicted RBP	13.52	□□□□□ -0.25
TUBE1-210	ENST00000604967	PGAP2	Q9UHJ9	254 aa		13.52	□□□□□ -0.25
TUBE1-210	ENST00000604967	MED23	Q9ULK4	1368 aa		13.52	□□□□□ -0.25
TUBE1-210	ENST00000604967	PSME4	Q14997	1843 aa		13.52	□□□□□ -0.25
TUBE1-210	ENST00000604967	ZNF804B	A4D1E1	1349 aa		13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	ANKRD18B	A2A2Z9	1011 aa		13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	BCAR3	O75815	825 aa		13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	IGHMBP2	P38935	993 aa	Known RBP	13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	IFIT5	Q13325	482 aa	Known RBP	13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	CST9	Q5W186	159 aa		13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	JMY	Q8N9B5	988 aa		13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	KLHDC4	Q8TBB5	520 aa		13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	DPF2	Q92785	391 aa		13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	CHMP3	Q9Y3E7	222 aa		13.51	□□□□□ -0.25
TUBE1-210	ENST00000604967	ZNF609	O15014	1411 aa		13.5	□□□□□ -0.25
TUBE1-210	ENST00000604967	CT47B1	P0C2W7	299 aa	Predicted RBP	13.5	□□□□□ -0.25
TUBE1-210	ENST00000604967	RFX5	P48382	616 aa	Predicted RBP	13.5	□□□□□ -0.25
TUBE1-210	ENST00000604967	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms