RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 TBC1D16Q8TBP0 767 aa12.37□□□□□ -0.43
VRK3-224ENST00000601849 TRPM4Q8TD43 1214 aa12.37□□□□□ -0.43
VRK3-224ENST00000601849 ZNF428Q96B54 188 aa12.37□□□□□ -0.43
VRK3-224ENST00000601849 POLLQ9UGP5 575 aa12.37□□□□□ -0.43
VRK3-224ENST00000601849 GGA1Q9UJY5 639 aa12.37□□□□□ -0.43
VRK3-224ENST00000601849 PDE8AO60658 829 aa12.36□□□□□ -0.43
VRK3-224ENST00000601849 CCDC30Q5VVM6 783 aa12.36□□□□□ -0.43
VRK3-224ENST00000601849 RGMBQ6NW40 437 aa12.36□□□□□ -0.43
VRK3-224ENST00000601849 MBIPQ9NS73 344 aa12.36□□□□□ -0.43
VRK3-224ENST00000601849 IFT57Q9NWB7 429 aa12.36□□□□□ -0.43
VRK3-224ENST00000601849 PODXL2Q9NZ53 605 aa12.36□□□□□ -0.43
VRK3-224ENST00000601849 UFL1O94874 794 aa12.35□□□□□ -0.43
VRK3-224ENST00000601849 ZNF157P51786 506 aaPredicted RBP12.35□□□□□ -0.43
VRK3-224ENST00000601849 MLLT1Q03111 559 aaPredicted RBP12.35□□□□□ -0.43
VRK3-224ENST00000601849 ANKRD18AQ8IVF6 992 aa12.35□□□□□ -0.43
VRK3-224ENST00000601849 REM2Q8IYK8 340 aaPredicted RBP12.35□□□□□ -0.43
VRK3-224ENST00000601849 MYD88Q99836 296 aa12.35□□□□□ -0.43
VRK3-224ENST00000601849 GBA2Q9HCG7 927 aaPredicted RBP12.35□□□□□ -0.43
VRK3-224ENST00000601849 CWC25Q9NXE8 425 aaPredicted RBP12.35□□□□□ -0.43
VRK3-224ENST00000601849 TSKSQ9UJT2 592 aa12.35□□□□□ -0.43
VRK3-224ENST00000601849 ELL2O00472 640 aaPredicted RBP12.34□□□□□ -0.43
VRK3-224ENST00000601849 PCCAP05165 728 aaPredicted RBP12.34□□□□□ -0.43
VRK3-224ENST00000601849 VIL1P09327 827 aaKnown RBP12.34□□□□□ -0.43
VRK3-224ENST00000601849 NEXNQ0ZGT2 675 aa12.34□□□□□ -0.43
VRK3-224ENST00000601849 KIF4BQ2VIQ3 1234 aa12.34□□□□□ -0.43
VRK3-224ENST00000601849 APAF1O14727 1248 aa12.33□□□□□ -0.44
VRK3-224ENST00000601849 ATP2B4P23634 1241 aa12.33□□□□□ -0.44
VRK3-224ENST00000601849 PODNQ7Z5L7 613 aa12.33□□□□□ -0.44
VRK3-224ENST00000601849 AGBL3Q8NEM8 1001 aa12.33□□□□□ -0.44
VRK3-224ENST00000601849 CDC5LQ99459 802 aaKnown RBP12.33□□□□□ -0.44
VRK3-224ENST00000601849 STK31Q9BXU1 1019 aa12.33□□□□□ -0.44
VRK3-224ENST00000601849 PHAXQ9H814 394 aaKnown RBP12.33□□□□□ -0.44
VRK3-224ENST00000601849 LAMB2P55268 1798 aa12.33□□□□□ -0.44
VRK3-224ENST00000601849 SHTN1A0MZ66 631 aa12.32□□□□□ -0.44
VRK3-224ENST00000601849 ZNF853P0CG23 659 aa12.32□□□□□ -0.44
VRK3-224ENST00000601849 DGKZQ13574 1117 aa12.32□□□□□ -0.44
VRK3-224ENST00000601849 FAM161AQ3B820 660 aa12.32□□□□□ -0.44
VRK3-224ENST00000601849 RSBN1LQ6PCB5 846 aaPredicted RBP12.32□□□□□ -0.44
VRK3-224ENST00000601849 OGFOD1Q8N543 542 aa12.32□□□□□ -0.44
VRK3-224ENST00000601849 METTL22Q9BUU2 404 aaPredicted RBP12.32□□□□□ -0.44
VRK3-224ENST00000601849 SEC31BQ9NQW1 1179 aa12.32□□□□□ -0.44
VRK3-224ENST00000601849 KCNQ5Q9NR82 932 aa12.32□□□□□ -0.44
VRK3-224ENST00000601849 SAGE1Q9NXZ1 904 aa12.32□□□□□ -0.44
VRK3-224ENST00000601849 XDHP47989 1333 aa12.32□□□□□ -0.44
VRK3-224ENST00000601849 THSD7BQ9C0I4 1608 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 USP17L3A6NCW0 530 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 USP17L4A6NCW7 530 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 USP17L8P0C7I0 530 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 RGS19P49795 217 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 MMP14P50281 582 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 FKBP1BP68106 108 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 KIF23Q02241 960 aaPredicted RBP12.31□□□□□ -0.44
VRK3-224ENST00000601849 SCARF1Q14162 830 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 USP17L1Q7RTZ2 530 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 MCOLN1Q9GZU1 580 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 PRKRIP1Q9H875 184 aaPredicted RBP12.31□□□□□ -0.44
VRK3-224ENST00000601849 GGA3Q9NZ52 723 aa12.31□□□□□ -0.44
VRK3-224ENST00000601849 ADM5C9JUS6 153 aa12.3□□□□□ -0.44
VRK3-224ENST00000601849 KSR2Q6VAB6 950 aa12.3□□□□□ -0.44
VRK3-224ENST00000601849 CCDC85AQ96PX6 553 aaPredicted RBP12.3□□□□□ -0.44
VRK3-224ENST00000601849 LRRC37AA6NMS7 1700 aa12.29□□□□□ -0.44
VRK3-224ENST00000601849 DDX60Q8IY21 1712 aaKnown RBP12.29□□□□□ -0.44
VRK3-224ENST00000601849 TRPA1O75762 1119 aa12.29□□□□□ -0.44
VRK3-224ENST00000601849 EGFRP00533 1210 aa12.29□□□□□ -0.44
VRK3-224ENST00000601849 NF2P35240 595 aa12.29□□□□□ -0.44
VRK3-224ENST00000601849 ZNF280AP59817 542 aaPredicted RBP12.29□□□□□ -0.44
VRK3-224ENST00000601849 ANGEL2Q5VTE6 544 aaKnown RBP12.29□□□□□ -0.44
VRK3-224ENST00000601849 CDCA5Q96FF9 252 aa12.29□□□□□ -0.44
VRK3-224ENST00000601849 MYOZ2Q9NPC6 264 aa12.29□□□□□ -0.44
VRK3-224ENST00000601849 MAP3K2Q9Y2U5 619 aa12.29□□□□□ -0.44
VRK3-224ENST00000601849 DUOX1Q9NRD9 1551 aa12.29□□□□□ -0.44
VRK3-224ENST00000601849 TAF1P21675 1872 aa12.29□□□□□ -0.44
VRK3-224ENST00000601849 RTL9Q8NET4 1388 aa12.29□□□□□ -0.44
VRK3-224ENST00000601849 PI4KAP2A4QPH2 592 aa12.28□□□□□ -0.44
VRK3-224ENST00000601849 IGHMBP2P38935 993 aaKnown RBP12.28□□□□□ -0.44
VRK3-224ENST00000601849 PI4KAP1Q8N8J0 262 aa12.28□□□□□ -0.44
VRK3-224ENST00000601849 C8orf58Q8NAV2 365 aa12.28□□□□□ -0.44
VRK3-224ENST00000601849 FBXW7Q969H0 707 aa12.28□□□□□ -0.44
VRK3-224ENST00000601849 BSDC1Q9NW68 430 aaPredicted RBP12.28□□□□□ -0.44
VRK3-224ENST00000601849 MYO3BQ8WXR4 1341 aa12.28□□□□□ -0.44
VRK3-224ENST00000601849 PITPNM2Q9BZ72 1349 aa12.28□□□□□ -0.44
VRK3-224ENST00000601849 FAM155AB1AL88 458 aaPredicted RBP12.27□□□□□ -0.45
VRK3-224ENST00000601849 SLC10A3P09131 477 aa12.27□□□□□ -0.45
VRK3-224ENST00000601849 CTSWP56202 376 aa12.27□□□□□ -0.45
VRK3-224ENST00000601849 TTLL12Q14166 644 aaPredicted RBP12.27□□□□□ -0.45
VRK3-224ENST00000601849 DLK2Q6UY11 383 aa12.27□□□□□ -0.45
VRK3-224ENST00000601849 JARID2Q92833 1246 aaPredicted RBP12.27□□□□□ -0.45
VRK3-224ENST00000601849 MPHOSPH8Q99549 860 aa12.27□□□□□ -0.45
VRK3-224ENST00000601849 ANKRD2Q9GZV1 360 aa12.27□□□□□ -0.45
VRK3-224ENST00000601849 RNF186Q9NXI6 227 aa12.27□□□□□ -0.45
VRK3-224ENST00000601849 HDAC9Q9UKV0 1011 aa12.27□□□□□ -0.45
VRK3-224ENST00000601849 LEMD3Q9Y2U8 911 aa12.27□□□□□ -0.45
VRK3-224ENST00000601849 CCT4P50991 539 aaKnown RBP12.26□□□□□ -0.45
VRK3-224ENST00000601849 TTLL11Q8NHH1 800 aa12.26□□□□□ -0.45
VRK3-224ENST00000601849 CSRNP1Q96S65 589 aa12.26□□□□□ -0.45
VRK3-224ENST00000601849 ZIC5Q96T25 663 aa12.26□□□□□ -0.45
VRK3-224ENST00000601849 COA1Q9GZY4 146 aa12.26□□□□□ -0.45
VRK3-224ENST00000601849 MYH16Q9H6N6 1097 aa12.26□□□□□ -0.45
VRK3-224ENST00000601849 MINPP1Q9UNW1 487 aa12.26□□□□□ -0.45
VRK3-224ENST00000601849 SLC4A2P04920 1241 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms