RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 SMC4Q9NTJ3 1288 aa16.11■□□□□ 0.17
UPF1-208ENST00000600012 YDJCA8MPS7 323 aa16.1■□□□□ 0.17
UPF1-208ENST00000600012 ATP5J2-PTCD1G3V325 749 aa16.1■□□□□ 0.17
UPF1-208ENST00000600012 CELF2O95319 508 aaKnown RBP16.1■□□□□ 0.17
UPF1-208ENST00000600012 WASHC4Q2M389 1173 aa16.1■□□□□ 0.17
UPF1-208ENST00000600012 ZNF428Q96B54 188 aa16.1■□□□□ 0.17
UPF1-208ENST00000600012 CNOT7Q9UIV1 285 aaKnown RBP16.1■□□□□ 0.17
UPF1-208ENST00000600012 H7C1D1 291 aa16.09■□□□□ 0.17
UPF1-208ENST00000600012 MAP2K2P36507 400 aa16.09■□□□□ 0.17
UPF1-208ENST00000600012 HIRAP54198 1017 aaPredicted RBP16.09■□□□□ 0.17
UPF1-208ENST00000600012 TRIM28Q13263 835 aaKnown RBP16.09■□□□□ 0.17
UPF1-208ENST00000600012 ALDH1L2Q3SY69 923 aa16.09■□□□□ 0.17
UPF1-208ENST00000600012 CDC37L1Q7L3B6 337 aa16.09■□□□□ 0.17
UPF1-208ENST00000600012 SAPCD2Q86UD0 394 aa16.09■□□□□ 0.17
UPF1-208ENST00000600012 TRPM4Q8TD43 1214 aa16.09■□□□□ 0.17
UPF1-208ENST00000600012 CELF1Q92879 486 aaKnown RBP16.09■□□□□ 0.17
UPF1-208ENST00000600012 HHIPL1Q96JK4 782 aa16.09■□□□□ 0.17
UPF1-208ENST00000600012 NSFL1CQ9UNZ2 370 aaKnown RBP16.09■□□□□ 0.17
UPF1-208ENST00000600012 MICALL2Q8IY33 904 aa16.08■□□□□ 0.16
UPF1-208ENST00000600012 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.08■□□□□ 0.16
UPF1-208ENST00000600012 DPF2Q92785 391 aa16.08■□□□□ 0.16
UPF1-208ENST00000600012 FRAT1Q92837 279 aaPredicted RBP16.08■□□□□ 0.16
UPF1-208ENST00000600012 COL4A1P02462 1669 aa16.08■□□□□ 0.16
UPF1-208ENST00000600012 POLR2AP24928 1970 aaKnown RBP16.07■□□□□ 0.16
UPF1-208ENST00000600012 C6orf229H3BNL8 230 aa16.07■□□□□ 0.16
UPF1-208ENST00000600012 IRS4O14654 1257 aaPredicted RBP16.07■□□□□ 0.16
UPF1-208ENST00000600012 HSP90B1P14625 803 aaKnown RBP16.07■□□□□ 0.16
UPF1-208ENST00000600012 MRPL50Q8N5N7 158 aaKnown RBP16.07■□□□□ 0.16
UPF1-208ENST00000600012 EYA3Q99504 573 aa16.07■□□□□ 0.16
UPF1-208ENST00000600012 DBNDD1Q9H9R9 158 aa16.07■□□□□ 0.16
UPF1-208ENST00000600012 SHTN1A0MZ66 631 aa16.06■□□□□ 0.16
UPF1-208ENST00000600012 PSMD14O00487 310 aa16.06■□□□□ 0.16
UPF1-208ENST00000600012 AOC2O75106 756 aa16.06■□□□□ 0.16
UPF1-208ENST00000600012 GPSM2P81274 684 aa16.06■□□□□ 0.16
UPF1-208ENST00000600012 RTL5Q5HYW3 569 aaPredicted RBP16.06■□□□□ 0.16
UPF1-208ENST00000600012 RIC3Q7Z5B4 369 aa16.06■□□□□ 0.16
UPF1-208ENST00000600012 ABHD8Q96I13 439 aa16.06■□□□□ 0.16
UPF1-208ENST00000600012 ZNF408Q9H9D4 720 aa16.06■□□□□ 0.16
UPF1-208ENST00000600012 POLLQ9UGP5 575 aa16.06■□□□□ 0.16
UPF1-208ENST00000600012 TNNQ9UQP3 1299 aa16.06■□□□□ 0.16
UPF1-208ENST00000600012 ZBTB12Q9Y330 459 aaPredicted RBP16.06■□□□□ 0.16
UPF1-208ENST00000600012 KIF16BQ96L93 1317 aa16.05■□□□□ 0.16
UPF1-208ENST00000600012 RIMBP2O15034 1052 aa16.05■□□□□ 0.16
UPF1-208ENST00000600012 CA12O43570 354 aa16.05■□□□□ 0.16
UPF1-208ENST00000600012 ECE2O60344 883 aa16.05■□□□□ 0.16
UPF1-208ENST00000600012 RPS12P25398 132 aaKnown RBP16.05■□□□□ 0.16
UPF1-208ENST00000600012 RPS8P62241 208 aaKnown RBP16.05■□□□□ 0.16
UPF1-208ENST00000600012 C20orf194Q5TEA3 1177 aa16.05■□□□□ 0.16
UPF1-208ENST00000600012 ZBTB38Q8NAP3 1195 aaPredicted RBP16.05■□□□□ 0.16
UPF1-208ENST00000600012 SCN9AQ15858 1988 aa16.05■□□□□ 0.16
UPF1-208ENST00000600012 BRPF1P55201 1214 aaPredicted RBP16.04■□□□□ 0.16
UPF1-208ENST00000600012 TBC1D16Q8TBP0 767 aa16.04■□□□□ 0.16
UPF1-208ENST00000600012 NOB1Q9ULX3 412 aaKnown RBP16.04■□□□□ 0.16
UPF1-208ENST00000600012 SAMD7Q7Z3H4 446 aa16.03■□□□□ 0.16
UPF1-208ENST00000600012 USP48Q86UV5 1035 aa16.03■□□□□ 0.16
UPF1-208ENST00000600012 CCDC191Q8NCU4 936 aa16.03■□□□□ 0.16
UPF1-208ENST00000600012 PHAXQ9H814 394 aaKnown RBP16.03■□□□□ 0.16
UPF1-208ENST00000600012 PODXL2Q9NZ53 605 aa16.03■□□□□ 0.16
UPF1-208ENST00000600012 PSME4Q14997 1843 aa16.03■□□□□ 0.16
UPF1-208ENST00000600012 RTL9Q8NET4 1388 aa16.02■□□□□ 0.16
UPF1-208ENST00000600012 CASP8AP2Q9UKL3 1982 aa16.02■□□□□ 0.16
UPF1-208ENST00000600012 NOGQ13253 232 aa16.02■□□□□ 0.16
UPF1-208ENST00000600012 DOK7Q18PE1 504 aa16.02■□□□□ 0.16
UPF1-208ENST00000600012 TBC1D10BQ4KMP7 808 aaPredicted RBP16.02■□□□□ 0.16
UPF1-208ENST00000600012 CCDC30Q5VVM6 783 aa16.02■□□□□ 0.16
UPF1-208ENST00000600012 ZKSCAN2Q63HK3 967 aa16.02■□□□□ 0.16
UPF1-208ENST00000600012 KRT26Q7Z3Y9 468 aa16.02■□□□□ 0.16
UPF1-208ENST00000600012 CRBNQ96SW2 442 aa16.02■□□□□ 0.16
UPF1-208ENST00000600012 MYD88Q99836 296 aa16.02■□□□□ 0.16
UPF1-208ENST00000600012 CHMP4AQ9BY43 222 aa16.02■□□□□ 0.16
UPF1-208ENST00000600012 ZC3H12CQ9C0D7 883 aaKnown RBP16.02■□□□□ 0.16
UPF1-208ENST00000600012 PCCAP05165 728 aaPredicted RBP16.01■□□□□ 0.15
UPF1-208ENST00000600012 HUNKP57058 714 aa16.01■□□□□ 0.15
UPF1-208ENST00000600012 CCDC152Q4G0S7 254 aa16.01■□□□□ 0.15
UPF1-208ENST00000600012 STK31Q9BXU1 1019 aa16.01■□□□□ 0.15
UPF1-208ENST00000600012 SEC31BQ9NQW1 1179 aa16.01■□□□□ 0.15
UPF1-208ENST00000600012 TSKSQ9UJT2 592 aa16.01■□□□□ 0.15
UPF1-208ENST00000600012 MYH3P11055 1940 aa16.01■□□□□ 0.15
UPF1-208ENST00000600012 G3V3G9 751 aa16■□□□□ 0.15
UPF1-208ENST00000600012 PDE8AO60658 829 aa16■□□□□ 0.15
UPF1-208ENST00000600012 UFL1O94874 794 aa16■□□□□ 0.15
UPF1-208ENST00000600012 DDX58O95786 925 aaKnown RBP16■□□□□ 0.15
UPF1-208ENST00000600012 EGFRP00533 1210 aa16■□□□□ 0.15
UPF1-208ENST00000600012 SLC4A2P04920 1241 aa16■□□□□ 0.15
UPF1-208ENST00000600012 VIL1P09327 827 aaKnown RBP16■□□□□ 0.15
UPF1-208ENST00000600012 DCAF8Q5TAQ9 597 aa16■□□□□ 0.15
UPF1-208ENST00000600012 EXOC6Q8TAG9 804 aa16■□□□□ 0.15
UPF1-208ENST00000600012 PANK1Q8TE04 598 aa16■□□□□ 0.15
UPF1-208ENST00000600012 CLUAP1Q96AJ1 413 aa16■□□□□ 0.15
UPF1-208ENST00000600012 DCPSQ96C86 337 aaKnown RBP16■□□□□ 0.15
UPF1-208ENST00000600012 KCNQ5Q9NR82 932 aa16■□□□□ 0.15
UPF1-208ENST00000600012 CWC25Q9NXE8 425 aaPredicted RBP16■□□□□ 0.15
UPF1-208ENST00000600012 ANKIB1Q9P2G1 1089 aa16■□□□□ 0.15
UPF1-208ENST00000600012 GGA1Q9UJY5 639 aa16■□□□□ 0.15
UPF1-208ENST00000600012 ZNF609O15014 1411 aa16■□□□□ 0.15
UPF1-208ENST00000600012 RLBP1P12271 317 aa15.99■□□□□ 0.15
UPF1-208ENST00000600012 TRIM27P14373 513 aa15.99■□□□□ 0.15
UPF1-208ENST00000600012 KIF4BQ2VIQ3 1234 aa15.99■□□□□ 0.15
UPF1-208ENST00000600012 RBM26Q5T8P6 1007 aaKnown RBP15.99■□□□□ 0.15
UPF1-208ENST00000600012 ATF7IPQ6VMQ6 1270 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms