RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 CDCA7LQ96GN5 454 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 PLA2G12BQ9BX93 195 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 BCL2L13Q9BXK5 485 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 CREBZFQ9NS37 354 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 SMC4Q9NTJ3 1288 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 CHMP3Q9Y3E7 222 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 TAF1P21675 1872 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 GRM8O00222 908 aa17.87■□□□□ 0.45
LIG1-218ENST00000599322 RIMBP2O15034 1052 aa17.87■□□□□ 0.45
LIG1-218ENST00000599322 UFL1O94874 794 aa17.87■□□□□ 0.45
LIG1-218ENST00000599322 ATP2B4P23634 1241 aa17.87■□□□□ 0.45
LIG1-218ENST00000599322 EPHX2P34913 555 aa17.87■□□□□ 0.45
LIG1-218ENST00000599322 GREM2Q9H772 168 aa17.87■□□□□ 0.45
LIG1-218ENST00000599322 XDHP47989 1333 aa17.87■□□□□ 0.45
LIG1-218ENST00000599322 ANKRD18BA2A2Z9 1011 aa17.86■□□□□ 0.45
LIG1-218ENST00000599322 TAF7LQ5H9L4 462 aa17.86■□□□□ 0.45
LIG1-218ENST00000599322 SSH1Q8WYL5 1049 aa17.86■□□□□ 0.45
LIG1-218ENST00000599322 BSDC1Q9NW68 430 aaPredicted RBP17.86■□□□□ 0.45
LIG1-218ENST00000599322 PODXL2Q9NZ53 605 aa17.86■□□□□ 0.45
LIG1-218ENST00000599322 MKRN1Q9UHC7 482 aaKnown RBP17.86■□□□□ 0.45
LIG1-218ENST00000599322 RTL9Q8NET4 1388 aa17.86■□□□□ 0.45
LIG1-218ENST00000599322 ITGBL1O95965 494 aaPredicted RBP17.85■□□□□ 0.45
LIG1-218ENST00000599322 ITGA6P23229 1130 aa17.85■□□□□ 0.45
LIG1-218ENST00000599322 HNRNPUQ00839 825 aaKnown RBP eCLIP17.85■□□□□ 0.45
LIG1-218ENST00000599322 IFIT5Q13325 482 aaKnown RBP17.85■□□□□ 0.45
LIG1-218ENST00000599322 TBC1D16Q8TBP0 767 aa17.85■□□□□ 0.45
LIG1-218ENST00000599322 ANKRD2Q9GZV1 360 aa17.85■□□□□ 0.45
LIG1-218ENST00000599322 TRPM7Q96QT4 1865 aa17.84■□□□□ 0.45
LIG1-218ENST00000599322 RAD17O75943 681 aa17.84■□□□□ 0.45
LIG1-218ENST00000599322 CXCL9Q07325 125 aa17.84■□□□□ 0.45
LIG1-218ENST00000599322 CCDC57Q2TAC2 916 aa17.84■□□□□ 0.45
LIG1-218ENST00000599322 TRMT2AQ8IZ69 625 aaKnown RBP17.84■□□□□ 0.45
LIG1-218ENST00000599322 POLLQ9UGP5 575 aa17.84■□□□□ 0.45
LIG1-218ENST00000599322 CNTNAP1P78357 1384 aa17.83■□□□□ 0.45
LIG1-218ENST00000599322 CSF1RP07333 972 aa17.83■□□□□ 0.44
LIG1-218ENST00000599322 KCNJ4P48050 445 aa17.83■□□□□ 0.44
LIG1-218ENST00000599322 TNS4Q8IZW8 715 aa17.83■□□□□ 0.44
LIG1-218ENST00000599322 H7C1D1 291 aa17.82■□□□□ 0.44
LIG1-218ENST00000599322 CASP7P55210 303 aa17.82■□□□□ 0.44
LIG1-218ENST00000599322 DOK7Q18PE1 504 aa17.82■□□□□ 0.44
LIG1-218ENST00000599322 FAM161AQ3B820 660 aa17.82■□□□□ 0.44
LIG1-218ENST00000599322 USP50Q70EL3 339 aaPredicted RBP17.82■□□□□ 0.44
LIG1-218ENST00000599322 API5Q9BZZ5 524 aaKnown RBP17.82■□□□□ 0.44
LIG1-218ENST00000599322 DBNDD1Q9H9R9 158 aa17.82■□□□□ 0.44
LIG1-218ENST00000599322 HDAC5Q9UQL6 1122 aa17.82■□□□□ 0.44
LIG1-218ENST00000599322 ECE2O60344 883 aa17.81■□□□□ 0.44
LIG1-218ENST00000599322 LMBR1LQ6UX01 489 aa17.81■□□□□ 0.44
LIG1-218ENST00000599322 ADARB2Q9NS39 739 aaKnown RBP17.81■□□□□ 0.44
LIG1-218ENST00000599322 MINPP1Q9UNW1 487 aa17.81■□□□□ 0.44
LIG1-218ENST00000599322 LEMD3Q9Y2U8 911 aa17.81■□□□□ 0.44
LIG1-218ENST00000599322 GMPSP49915 693 aaPredicted RBP17.8■□□□□ 0.44
LIG1-218ENST00000599322 GPRC5DQ9NZD1 345 aa17.8■□□□□ 0.44
LIG1-218ENST00000599322 LRRC37AA6NMS7 1700 aa17.8■□□□□ 0.44
LIG1-218ENST00000599322 MYH3P11055 1940 aa17.79■□□□□ 0.44
LIG1-218ENST00000599322 TMEM88BA6NKF7 163 aa17.79■□□□□ 0.44
LIG1-218ENST00000599322 IPO8O15397 1037 aaKnown RBP17.79■□□□□ 0.44
LIG1-218ENST00000599322 CAPN15O75808 1086 aa17.79■□□□□ 0.44
LIG1-218ENST00000599322 RPS12P25398 132 aaKnown RBP17.79■□□□□ 0.44
LIG1-218ENST00000599322 CCT4P50991 539 aaKnown RBP17.79■□□□□ 0.44
LIG1-218ENST00000599322 SCNN1DP51172 638 aa17.79■□□□□ 0.44
LIG1-218ENST00000599322 MAP1SQ66K74 1059 aaPredicted RBP17.79■□□□□ 0.44
LIG1-218ENST00000599322 CNNM1Q9NRU3 951 aa17.79■□□□□ 0.44
LIG1-218ENST00000599322 KIF16BQ96L93 1317 aa17.78■□□□□ 0.44
LIG1-218ENST00000599322 EPS15P42566 896 aa17.78■□□□□ 0.44
LIG1-218ENST00000599322 FOXO4P98177 505 aa17.78■□□□□ 0.44
LIG1-218ENST00000599322 PODNQ7Z5L7 613 aa17.78■□□□□ 0.44
LIG1-218ENST00000599322 CNTROBQ8N137 903 aa17.78■□□□□ 0.44
LIG1-218ENST00000599322 DPF2Q92785 391 aa17.78■□□□□ 0.44
LIG1-218ENST00000599322 VEGFBP49765 207 aa17.77■□□□□ 0.44
LIG1-218ENST00000599322 LDHAL6AQ6ZMR3 332 aa17.77■□□□□ 0.44
LIG1-218ENST00000599322 GPR101Q96P66 508 aaPredicted RBP17.77■□□□□ 0.44
LIG1-218ENST00000599322 CNOT7Q9UIV1 285 aaKnown RBP17.77■□□□□ 0.44
LIG1-218ENST00000599322 NOB1Q9ULX3 412 aaKnown RBP17.77■□□□□ 0.44
LIG1-218ENST00000599322 ZNF804BA4D1E1 1349 aa17.76■□□□□ 0.43
LIG1-218ENST00000599322 YDJCA8MPS7 323 aa17.76■□□□□ 0.43
LIG1-218ENST00000599322 PSMD14O00487 310 aa17.76■□□□□ 0.43
LIG1-218ENST00000599322 FOXN1O15353 648 aa17.76■□□□□ 0.43
LIG1-218ENST00000599322 RARSP54136 660 aaKnown RBP17.75■□□□□ 0.43
LIG1-218ENST00000599322 BRPF1P55201 1214 aaPredicted RBP17.75■□□□□ 0.43
LIG1-218ENST00000599322 CHRNDQ07001 517 aa17.75■□□□□ 0.43
LIG1-218ENST00000599322 SUCLG2Q96I99 432 aa17.75■□□□□ 0.43
LIG1-218ENST00000599322 COA1Q9GZY4 146 aa17.75■□□□□ 0.43
LIG1-218ENST00000599322 THSD7BQ9C0I4 1608 aa17.75■□□□□ 0.43
LIG1-218ENST00000599322 MED23Q9ULK4 1368 aa17.75■□□□□ 0.43
LIG1-218ENST00000599322 DUOX1Q9NRD9 1551 aa17.74■□□□□ 0.43
LIG1-218ENST00000599322 UTYO14607 1347 aa17.74■□□□□ 0.43
LIG1-218ENST00000599322 NBPF7P0C2Y1 421 aaPredicted RBP17.74■□□□□ 0.43
LIG1-218ENST00000599322 MICALL2Q8IY33 904 aa17.74■□□□□ 0.43
LIG1-218ENST00000599322 ARHGAP45Q92619 1136 aa17.74■□□□□ 0.43
LIG1-218ENST00000599322 FBXW7Q969H0 707 aa17.74■□□□□ 0.43
LIG1-218ENST00000599322 ZBTB12Q9Y330 459 aaPredicted RBP17.74■□□□□ 0.43
LIG1-218ENST00000599322 COL4A1P02462 1669 aa17.74■□□□□ 0.43
LIG1-218ENST00000599322 USP17L3A6NCW0 530 aa17.73■□□□□ 0.43
LIG1-218ENST00000599322 USP17L4A6NCW7 530 aa17.73■□□□□ 0.43
LIG1-218ENST00000599322 RASSF10A6NK89 507 aa17.73■□□□□ 0.43
LIG1-218ENST00000599322 PLIN1O60240 522 aa17.73■□□□□ 0.43
LIG1-218ENST00000599322 UBTFL1P0CB47 393 aaPredicted RBP17.73■□□□□ 0.43
LIG1-218ENST00000599322 FMR1Q06787 632 aaKnown RBP eCLIP17.73■□□□□ 0.43
LIG1-218ENST00000599322 EPHA10Q5JZY3 1008 aa17.73■□□□□ 0.43
LIG1-218ENST00000599322 USP17L1Q7RTZ2 530 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms