RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PCCA	P05165	728 aa	Predicted RBP	13.59	□□□□□ -0.23
LSM4-205	ENST00000597776	ECE1	P42892	770 aa		13.59	□□□□□ -0.23
LSM4-205	ENST00000597776	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.59	□□□□□ -0.23
LSM4-205	ENST00000597776	CCDC30	Q5VVM6	783 aa		13.59	□□□□□ -0.23
LSM4-205	ENST00000597776	SAPCD2	Q86UD0	394 aa		13.59	□□□□□ -0.23
LSM4-205	ENST00000597776	ZC3H15	Q8WU90	426 aa	Known RBP	13.59	□□□□□ -0.23
LSM4-205	ENST00000597776	METTL22	Q9BUU2	404 aa	Predicted RBP	13.59	□□□□□ -0.23
LSM4-205	ENST00000597776	MAP3K2	Q9Y2U5	619 aa		13.59	□□□□□ -0.23
LSM4-205	ENST00000597776	PDE8A	O60658	829 aa		13.58	□□□□□ -0.24
LSM4-205	ENST00000597776	UFL1	O94874	794 aa		13.58	□□□□□ -0.24
LSM4-205	ENST00000597776	DDX58	O95786	925 aa	Known RBP	13.58	□□□□□ -0.24
LSM4-205	ENST00000597776	CCDC152	Q4G0S7	254 aa		13.58	□□□□□ -0.24
LSM4-205	ENST00000597776	USP48	Q86UV5	1035 aa		13.58	□□□□□ -0.24
LSM4-205	ENST00000597776	DPF2	Q92785	391 aa		13.58	□□□□□ -0.24
LSM4-205	ENST00000597776	EYA3	Q99504	573 aa		13.58	□□□□□ -0.24
LSM4-205	ENST00000597776	ANKIB1	Q9P2G1	1089 aa		13.58	□□□□□ -0.24
LSM4-205	ENST00000597776	HSP90B1	P14625	803 aa	Known RBP	13.57	□□□□□ -0.24
LSM4-205	ENST00000597776	RBM26	Q5T8P6	1007 aa	Known RBP	13.57	□□□□□ -0.24
LSM4-205	ENST00000597776	CDC37L1	Q7L3B6	337 aa		13.57	□□□□□ -0.24
LSM4-205	ENST00000597776	PODXL2	Q9NZ53	605 aa		13.57	□□□□□ -0.24
LSM4-205	ENST00000597776	TSKS	Q9UJT2	592 aa		13.57	□□□□□ -0.24
LSM4-205	ENST00000597776	GGA1	Q9UJY5	639 aa		13.57	□□□□□ -0.24
LSM4-205	ENST00000597776	SCN9A	Q15858	1988 aa		13.56	□□□□□ -0.24
LSM4-205	ENST00000597776	PI4KAP2	A4QPH2	592 aa		13.56	□□□□□ -0.24
LSM4-205	ENST00000597776	IGKV5-2	P06315	115 aa		13.56	□□□□□ -0.24
LSM4-205	ENST00000597776	PI4KAP1	Q8N8J0	262 aa		13.56	□□□□□ -0.24
LSM4-205	ENST00000597776	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.56	□□□□□ -0.24
LSM4-205	ENST00000597776	ADM5	C9JUS6	153 aa		13.55	□□□□□ -0.24
LSM4-205	ENST00000597776		G3V3G9	751 aa		13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	RPS12	P25398	132 aa	Known RBP	13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	CTSW	P56202	376 aa		13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	CWF19L2	Q2TBE0	894 aa	Known RBP	13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	DCAF8	Q5TAQ9	597 aa		13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	KSR2	Q6VAB6	950 aa		13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	G2E3	Q7L622	706 aa		13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	KRT26	Q7Z3Y9	468 aa		13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	ANKRD18A	Q8IVF6	992 aa		13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	WWC1	Q8IX03	1113 aa		13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	BEGAIN	Q9BUH8	593 aa		13.55	□□□□□ -0.24
LSM4-205	ENST00000597776	WTIP	A6NIX2	430 aa	Predicted RBP	13.54	□□□□□ -0.24
LSM4-205	ENST00000597776	VIL1	P09327	827 aa	Known RBP	13.54	□□□□□ -0.24
LSM4-205	ENST00000597776	MAP2K2	P36507	400 aa		13.54	□□□□□ -0.24
LSM4-205	ENST00000597776	KIF4B	Q2VIQ3	1234 aa		13.54	□□□□□ -0.24
LSM4-205	ENST00000597776	STK31	Q9BXU1	1019 aa		13.54	□□□□□ -0.24
LSM4-205	ENST00000597776	ASTN2	O75129	1339 aa	Predicted RBP	13.54	□□□□□ -0.24
LSM4-205	ENST00000597776	HUNK	P57058	714 aa		13.53	□□□□□ -0.24
LSM4-205	ENST00000597776	CCDC27	Q2M243	656 aa		13.53	□□□□□ -0.24
LSM4-205	ENST00000597776	TWISTNB	Q3B726	338 aa	Predicted RBP	13.53	□□□□□ -0.24
LSM4-205	ENST00000597776	HHIPL1	Q96JK4	782 aa		13.53	□□□□□ -0.24
LSM4-205	ENST00000597776	CHMP4A	Q9BY43	222 aa		13.53	□□□□□ -0.24
LSM4-205	ENST00000597776	GREM2	Q9H772	168 aa		13.53	□□□□□ -0.24
LSM4-205	ENST00000597776	XDH	P47989	1333 aa		13.53	□□□□□ -0.24
LSM4-205	ENST00000597776	SPEF2	Q9C093	1822 aa		13.53	□□□□□ -0.24
LSM4-205	ENST00000597776	NEURL1B	A8MQ27	555 aa		13.52	□□□□□ -0.25
LSM4-205	ENST00000597776	NEXN	Q0ZGT2	675 aa		13.52	□□□□□ -0.25
LSM4-205	ENST00000597776	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.52	□□□□□ -0.25
LSM4-205	ENST00000597776	UBE3B	Q7Z3V4	1068 aa		13.52	□□□□□ -0.25
LSM4-205	ENST00000597776	TTLL11	Q8NHH1	800 aa		13.52	□□□□□ -0.25
LSM4-205	ENST00000597776	DCPS	Q96C86	337 aa	Known RBP	13.52	□□□□□ -0.25
LSM4-205	ENST00000597776	ZIC5	Q96T25	663 aa		13.52	□□□□□ -0.25
LSM4-205	ENST00000597776	CDC5L	Q99459	802 aa	Known RBP	13.52	□□□□□ -0.25
LSM4-205	ENST00000597776	GGA3	Q9NZ52	723 aa		13.52	□□□□□ -0.25
LSM4-205	ENST00000597776	SLC4A2	P04920	1241 aa		13.51	□□□□□ -0.25
LSM4-205	ENST00000597776	ATP2B4	P23634	1241 aa		13.51	□□□□□ -0.25
LSM4-205	ENST00000597776	ABHD8	Q96I13	439 aa		13.51	□□□□□ -0.25
LSM4-205	ENST00000597776	SALL2	Q9Y467	1007 aa	Predicted RBP	13.51	□□□□□ -0.25
LSM4-205	ENST00000597776	ZNF609	O15014	1411 aa		13.5	□□□□□ -0.25
LSM4-205	ENST00000597776	IL16	Q14005	1332 aa		13.5	□□□□□ -0.25
LSM4-205	ENST00000597776	FANCI	Q9NVI1	1328 aa		13.5	□□□□□ -0.25
LSM4-205	ENST00000597776	BRPF1	P55201	1214 aa	Predicted RBP	13.5	□□□□□ -0.25
LSM4-205	ENST00000597776	ZNF280A	P59817	542 aa	Predicted RBP	13.5	□□□□□ -0.25
LSM4-205	ENST00000597776	SULF1	Q8IWU6	871 aa		13.5	□□□□□ -0.25
LSM4-205	ENST00000597776	GBA2	Q9HCG7	927 aa	Predicted RBP	13.5	□□□□□ -0.25
LSM4-205	ENST00000597776	MRS2	Q9HD23	443 aa		13.5	□□□□□ -0.25
LSM4-205	ENST00000597776	MINPP1	Q9UNW1	487 aa		13.5	□□□□□ -0.25
LSM4-205	ENST00000597776	POLR2A	P24928	1970 aa	Known RBP	13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	MYH3	P11055	1940 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	PSME4	Q14997	1843 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	USP17L3	A6NCW0	530 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	USP17L4	A6NCW7	530 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776		H7C1W4	665 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	FLII	Q13045	1269 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	NOG	Q13253	232 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	SCARF1	Q14162	830 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	ANGEL2	Q5VTE6	544 aa	Known RBP	13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	USP17L1	Q7RTZ2	530 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	C2orf69	Q8N8R5	385 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	AGBL3	Q8NEM8	1001 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	GML	Q99445	158 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	MXD3	Q9BW11	206 aa		13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	BSDC1	Q9NW68	430 aa	Predicted RBP	13.49	□□□□□ -0.25
LSM4-205	ENST00000597776	MED23	Q9ULK4	1368 aa		13.48	□□□□□ -0.25
LSM4-205	ENST00000597776	FAM155A	B1AL88	458 aa	Predicted RBP	13.48	□□□□□ -0.25
LSM4-205	ENST00000597776	CA12	O43570	354 aa		13.48	□□□□□ -0.25
LSM4-205	ENST00000597776	CCT4	P50991	539 aa	Known RBP	13.48	□□□□□ -0.25
LSM4-205	ENST00000597776	FKBP5	Q13451	457 aa	Predicted RBP	13.48	□□□□□ -0.25
LSM4-205	ENST00000597776	GCKR	Q14397	625 aa		13.48	□□□□□ -0.25
LSM4-205	ENST00000597776	FAM161A	Q3B820	660 aa		13.48	□□□□□ -0.25
LSM4-205	ENST00000597776	RGMB	Q6NW40	437 aa		13.48	□□□□□ -0.25
LSM4-205	ENST00000597776	CDCA5	Q96FF9	252 aa		13.48	□□□□□ -0.25

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