RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 RIPOR2Q9Y4F9 1068 aa16.15■□□□□ 0.18
VRK3-205ENST00000593919 GPR108Q9NPR9 543 aa16.15■□□□□ 0.18
VRK3-205ENST00000593919 CEP126Q9P2H0 1117 aa16.15■□□□□ 0.18
VRK3-205ENST00000593919 ERC2O15083 957 aa16.14■□□□□ 0.17
VRK3-205ENST00000593919 TBC1D9Q6ZT07 1266 aa16.14■□□□□ 0.17
VRK3-205ENST00000593919 TBC1D32Q96NH3 1257 aa16.14■□□□□ 0.17
VRK3-205ENST00000593919 NLRP3Q96P20 1036 aa16.14■□□□□ 0.17
VRK3-205ENST00000593919 A0A1B0GUL6 1792 aa16.13■□□□□ 0.17
VRK3-205ENST00000593919 CDC45O75419 566 aa16.13■□□□□ 0.17
VRK3-205ENST00000593919 GLRX3O76003 335 aaKnown RBP16.13■□□□□ 0.17
VRK3-205ENST00000593919 DDR1Q08345 913 aa16.13■□□□□ 0.17
VRK3-205ENST00000593919 SLC15A2Q16348 729 aa16.13■□□□□ 0.17
VRK3-205ENST00000593919 PRR5LQ6MZQ0 368 aa16.13■□□□□ 0.17
VRK3-205ENST00000593919 TRIM6-TRIM34B2RNG4 842 aa16.13■□□□□ 0.17
VRK3-205ENST00000593919 POLRMTO00411 1230 aaKnown RBP16.13■□□□□ 0.17
VRK3-205ENST00000593919 SERPINB2P05120 415 aa16.13■□□□□ 0.17
VRK3-205ENST00000593919 MFAP1P55081 439 aaKnown RBP16.13■□□□□ 0.17
VRK3-205ENST00000593919 METTL24Q5JXM2 366 aa16.13■□□□□ 0.17
VRK3-205ENST00000593919 MPHOSPH8Q99549 860 aa16.13■□□□□ 0.17
VRK3-205ENST00000593919 DBNDD2Q9BQY9 259 aa16.13■□□□□ 0.17
VRK3-205ENST00000593919 A0A1B0GUL7 405 aa16.12■□□□□ 0.17
VRK3-205ENST00000593919 TIMM10P62072 90 aa16.12■□□□□ 0.17
VRK3-205ENST00000593919 CDC5LQ99459 802 aaKnown RBP16.12■□□□□ 0.17
VRK3-205ENST00000593919 PODXL2Q9NZ53 605 aa16.12■□□□□ 0.17
VRK3-205ENST00000593919 NRXN2Q9P2S2 1712 aa16.12■□□□□ 0.17
VRK3-205ENST00000593919 MAP4K4O95819 1239 aaPredicted RBP16.11■□□□□ 0.17
VRK3-205ENST00000593919 IGHMBP2P38935 993 aaKnown RBP16.11■□□□□ 0.17
VRK3-205ENST00000593919 NLGN1Q8N2Q7 840 aa16.11■□□□□ 0.17
VRK3-205ENST00000593919 VGLL2Q8N8G2 317 aa16.11■□□□□ 0.17
VRK3-205ENST00000593919 RILPL2Q969X0 211 aa16.11■□□□□ 0.17
VRK3-205ENST00000593919 NEUROD6Q96NK8 337 aa16.11■□□□□ 0.17
VRK3-205ENST00000593919 STK32BQ9NY57 414 aa16.11■□□□□ 0.17
VRK3-205ENST00000593919 AKAP2Q9Y2D5 859 aa16.11■□□□□ 0.17
VRK3-205ENST00000593919 ARAP2Q8WZ64 1704 aa16.1■□□□□ 0.17
VRK3-205ENST00000593919 ANKRD31Q8N7Z5 1873 aa16.1■□□□□ 0.17
VRK3-205ENST00000593919 MROH5Q6ZUA9 1318 aa16.1■□□□□ 0.17
VRK3-205ENST00000593919 PDE8BO95263 885 aa16.09■□□□□ 0.17
VRK3-205ENST00000593919 ST5P78524 1137 aa16.09■□□□□ 0.17
VRK3-205ENST00000593919 BECN1Q14457 450 aa16.09■□□□□ 0.17
VRK3-205ENST00000593919 ANKRD18AQ8IVF6 992 aa16.09■□□□□ 0.17
VRK3-205ENST00000593919 CNTROBQ8N137 903 aa16.09■□□□□ 0.17
VRK3-205ENST00000593919 HELBQ8NG08 1087 aaPredicted RBP16.09■□□□□ 0.17
VRK3-205ENST00000593919 CELF1Q92879 486 aaKnown RBP16.09■□□□□ 0.17
VRK3-205ENST00000593919 BOLA2Q9H3K6 86 aa16.09■□□□□ 0.17
VRK3-205ENST00000593919 ATP5JP18859 108 aa16.08■□□□□ 0.16
VRK3-205ENST00000593919 ATP2B3Q16720 1220 aa16.08■□□□□ 0.16
VRK3-205ENST00000593919 MSL1Q68DK7 614 aa16.08■□□□□ 0.16
VRK3-205ENST00000593919 C22orf23Q9BZE7 217 aa16.08■□□□□ 0.16
VRK3-205ENST00000593919 ADORA1P30542 326 aa16.07■□□□□ 0.16
VRK3-205ENST00000593919 XAGE2Q96GT9 111 aa16.07■□□□□ 0.16
VRK3-205ENST00000593919 BSDC1Q9NW68 430 aaPredicted RBP16.07■□□□□ 0.16
VRK3-205ENST00000593919 MMP10P09238 476 aa16.07■□□□□ 0.16
VRK3-205ENST00000593919 CASC1Q6TDU7 716 aa16.07■□□□□ 0.16
VRK3-205ENST00000593919 DDX46Q7L014 1031 aaKnown RBP16.07■□□□□ 0.16
VRK3-205ENST00000593919 CCDC125Q86Z20 511 aa16.07■□□□□ 0.16
VRK3-205ENST00000593919 TAF5LO75529 589 aa16.06■□□□□ 0.16
VRK3-205ENST00000593919 CHRNDQ07001 517 aa16.06■□□□□ 0.16
VRK3-205ENST00000593919 PUM3Q15397 648 aaKnown RBP16.06■□□□□ 0.16
VRK3-205ENST00000593919 AKAP11Q9UKA4 1901 aa16.06■□□□□ 0.16
VRK3-205ENST00000593919 CHMLP26374 656 aa16.06■□□□□ 0.16
VRK3-205ENST00000593919 DEKP35659 375 aaKnown RBP16.06■□□□□ 0.16
VRK3-205ENST00000593919 RPS8P62241 208 aaKnown RBP16.06■□□□□ 0.16
VRK3-205ENST00000593919 CRY2Q49AN0 593 aa16.06■□□□□ 0.16
VRK3-205ENST00000593919 SNAP23O00161 211 aa16.05■□□□□ 0.16
VRK3-205ENST00000593919 FGFR2P21802 821 aa16.05■□□□□ 0.16
VRK3-205ENST00000593919 EVI5LQ96CN4 794 aa16.05■□□□□ 0.16
VRK3-205ENST00000593919 NDUFB9Q9Y6M9 179 aa16.05■□□□□ 0.16
VRK3-205ENST00000593919 GORABQ5T7V8 394 aa16.04■□□□□ 0.16
VRK3-205ENST00000593919 LPIN2Q92539 896 aa16.04■□□□□ 0.16
VRK3-205ENST00000593919 HAUS7Q99871 368 aa16.04■□□□□ 0.16
VRK3-205ENST00000593919 PARP3Q9Y6F1 533 aa16.04■□□□□ 0.16
VRK3-205ENST00000593919 GOLGB1Q14789 3259 aaKnown RBP16.04■□□□□ 0.16
VRK3-205ENST00000593919 CCDC158Q5M9N0 1113 aa16.04■□□□□ 0.16
VRK3-205ENST00000593919 RPGRQ92834 1020 aaKnown RBP16.04■□□□□ 0.16
VRK3-205ENST00000593919 EDC3Q96F86 508 aaKnown RBP16.04■□□□□ 0.16
VRK3-205ENST00000593919 DNAJC2Q99543 621 aaKnown RBP16.04■□□□□ 0.16
VRK3-205ENST00000593919 PDGFDQ9GZP0 370 aaPredicted RBP16.04■□□□□ 0.16
VRK3-205ENST00000593919 MINPP1Q9UNW1 487 aa16.04■□□□□ 0.16
VRK3-205ENST00000593919 COL11A2P13942 1736 aaPredicted RBP16.03■□□□□ 0.16
VRK3-205ENST00000593919 GRAPQ13588 217 aa16.03■□□□□ 0.16
VRK3-205ENST00000593919 NFKBIBQ15653 356 aa16.03■□□□□ 0.16
VRK3-205ENST00000593919 GRAPLQ8TC17 118 aaPredicted RBP16.03■□□□□ 0.16
VRK3-205ENST00000593919 SLC5A1P13866 664 aa16.02■□□□□ 0.16
VRK3-205ENST00000593919 TTC39AQ5SRH9 613 aa16.02■□□□□ 0.16
VRK3-205ENST00000593919 TBC1D2Q9BYX2 928 aa16.02■□□□□ 0.16
VRK3-205ENST00000593919 KLRG2A4D1S0 409 aaPredicted RBP16.02■□□□□ 0.15
VRK3-205ENST00000593919 IFIT1P09914 478 aaKnown RBP16.02■□□□□ 0.15
VRK3-205ENST00000593919 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.02■□□□□ 0.15
VRK3-205ENST00000593919 ESYT1Q9BSJ8 1104 aa16.02■□□□□ 0.15
VRK3-205ENST00000593919 MYO5AQ9Y4I1 1855 aaKnown RBP16.01■□□□□ 0.15
VRK3-205ENST00000593919 MYH7P12883 1935 aa16.01■□□□□ 0.15
VRK3-205ENST00000593919 FSD1Q9BTV5 496 aa16.01■□□□□ 0.15
VRK3-205ENST00000593919 BRIP1Q9BX63 1249 aa16.01■□□□□ 0.15
VRK3-205ENST00000593919 SLKQ9H2G2 1235 aaPredicted RBP16.01■□□□□ 0.15
VRK3-205ENST00000593919 CACNA1SQ13698 1873 aa16.01■□□□□ 0.15
VRK3-205ENST00000593919 PHKA1P46020 1223 aa16■□□□□ 0.15
VRK3-205ENST00000593919 SCARF1Q14162 830 aa16■□□□□ 0.15
VRK3-205ENST00000593919 CCDC102BQ68D86 513 aa16■□□□□ 0.15
VRK3-205ENST00000593919 IL25Q9H293 177 aa16■□□□□ 0.15
VRK3-205ENST00000593919 WTIPA6NIX2 430 aaPredicted RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms