RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 ATP5JP18859 108 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 KRT32Q14532 448 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 VSIG10Q8N0Z9 540 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 DNAJC5GQ8N7S2 189 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 CCDC191Q8NCU4 936 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 KAZALD1Q96I82 304 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 FSD1Q9BTV5 496 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 ATG3Q9NT62 314 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 FBXO3Q9UK99 471 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 PALD1Q9ULE6 856 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 ASAP1Q9ULH1 1129 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 MAP4K4O95819 1239 aaPredicted RBP12.7□□□□□ -0.38
ZNF540-208ENST00000589857 KLRG1Q96E93 195 aa12.7□□□□□ -0.38
ZNF540-208ENST00000589857 BRPF3Q9ULD4 1205 aa12.7□□□□□ -0.38
ZNF540-208ENST00000589857 H7C1W4 665 aa12.69□□□□□ -0.38
ZNF540-208ENST00000589857 RPS6KA4O75676 772 aa12.69□□□□□ -0.38
ZNF540-208ENST00000589857 ZNF445P59923 1031 aa12.69□□□□□ -0.38
ZNF540-208ENST00000589857 TNNI3KQ59H18 835 aa12.69□□□□□ -0.38
ZNF540-208ENST00000589857 DALRD3Q5D0E6 543 aaKnown RBP12.69□□□□□ -0.38
ZNF540-208ENST00000589857 C9orf131Q5VYM1 1079 aa12.69□□□□□ -0.38
ZNF540-208ENST00000589857 PPP4R3CPQ6ZMV5 832 aa12.69□□□□□ -0.38
ZNF540-208ENST00000589857 UBE3BQ7Z3V4 1068 aa12.69□□□□□ -0.38
ZNF540-208ENST00000589857 ZGPATQ8N5A5 531 aaKnown RBP12.69□□□□□ -0.38
ZNF540-208ENST00000589857 CHMP4CQ96CF2 233 aa12.69□□□□□ -0.38
ZNF540-208ENST00000589857 EAF2Q96CJ1 260 aaPredicted RBP12.69□□□□□ -0.38
ZNF540-208ENST00000589857 PDRG1Q9NUG6 133 aa12.69□□□□□ -0.38
ZNF540-208ENST00000589857 FPGT-TNNI3KV9GXZ4 949 aa12.69□□□□□ -0.38
ZNF540-208ENST00000589857 CIAO1O76071 339 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 XRCC6P12956 609 aaKnown RBP eCLIP12.68□□□□□ -0.38
ZNF540-208ENST00000589857 DPEP1P16444 411 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 IL15P40933 162 aaPredicted RBP12.68□□□□□ -0.38
ZNF540-208ENST00000589857 ITPK1Q13572 414 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 KIF6Q6ZMV9 814 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 AMIGO3Q86WK7 504 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 SMC1BQ8NDV3 1235 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 ARHGEF1Q92888 912 aaKnown RBP12.68□□□□□ -0.38
ZNF540-208ENST00000589857 TTC14Q96N46 770 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 UPF3BQ9BZI7 483 aaKnown RBP12.68□□□□□ -0.38
ZNF540-208ENST00000589857 SIL1Q9H173 461 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 ALDH8A1Q9H2A2 487 aaPredicted RBP12.68□□□□□ -0.38
ZNF540-208ENST00000589857 ZSWIM6Q9HCJ5 1215 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 NMRK2Q9NPI5 230 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 LMBRD1Q9NUN5 540 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 SMC3Q9UQE7 1217 aa12.68□□□□□ -0.38
ZNF540-208ENST00000589857 CICQ96RK0 1608 aaPredicted RBP12.68□□□□□ -0.38
ZNF540-208ENST00000589857 CNTNAP4Q9C0A0 1308 aa12.67□□□□□ -0.38
ZNF540-208ENST00000589857 ZC3H4Q9UPT8 1303 aaKnown RBP12.67□□□□□ -0.38
ZNF540-208ENST00000589857 STARD3NLO95772 234 aa12.67□□□□□ -0.38
ZNF540-208ENST00000589857 CASTP20810 708 aaKnown RBP12.67□□□□□ -0.38
ZNF540-208ENST00000589857 RFX5P48382 616 aaPredicted RBP12.67□□□□□ -0.38
ZNF540-208ENST00000589857 PTPN12Q05209 780 aaKnown RBP12.67□□□□□ -0.38
ZNF540-208ENST00000589857 HSP90AB3PQ58FF7 597 aa12.67□□□□□ -0.38
ZNF540-208ENST00000589857 JMYQ8N9B5 988 aa12.67□□□□□ -0.38
ZNF540-208ENST00000589857 MAP4K1Q92918 833 aa12.67□□□□□ -0.38
ZNF540-208ENST00000589857 JAKMIP1Q96N16 626 aaKnown RBP12.67□□□□□ -0.38
ZNF540-208ENST00000589857 CCDC8Q9H0W5 538 aaPredicted RBP12.67□□□□□ -0.38
ZNF540-208ENST00000589857 U3KPZ7 1027 aaPredicted RBP12.67□□□□□ -0.38
ZNF540-208ENST00000589857 TAF1LQ8IZX4 1826 aa12.67□□□□□ -0.38
ZNF540-208ENST00000589857 C10orf71Q711Q0 1435 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 GYS1P13807 737 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 PDCP20941 246 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 CASP7P55210 303 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 TRIM28Q13263 835 aaKnown RBP12.66□□□□□ -0.38
ZNF540-208ENST00000589857 NMIQ13287 307 aaPredicted RBP12.66□□□□□ -0.38
ZNF540-208ENST00000589857 TSGA10IPQ3SY00 556 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 PRPF40BQ6NWY9 871 aaKnown RBP12.66□□□□□ -0.38
ZNF540-208ENST00000589857 SMIM5Q71RC9 77 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 RUFY3Q7L099 469 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 TNS4Q8IZW8 715 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.66□□□□□ -0.38
ZNF540-208ENST00000589857 RNF181Q9P0P0 153 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 RBM8AQ9Y5S9 174 aaKnown RBP12.66□□□□□ -0.38
ZNF540-208ENST00000589857 KCPQ6ZWJ8 1503 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 MED23Q9ULK4 1368 aa12.66□□□□□ -0.38
ZNF540-208ENST00000589857 PRPF40AO75400 957 aaKnown RBP12.65□□□□□ -0.38
ZNF540-208ENST00000589857 LETM1O95202 739 aaPredicted RBP12.65□□□□□ -0.38
ZNF540-208ENST00000589857 AK2P54819 239 aa12.65□□□□□ -0.38
ZNF540-208ENST00000589857 CCDC173Q0VFZ6 552 aa12.65□□□□□ -0.38
ZNF540-208ENST00000589857 TFCP2Q12800 502 aa12.65□□□□□ -0.38
ZNF540-208ENST00000589857 NECTIN1Q15223 517 aa12.65□□□□□ -0.38
ZNF540-208ENST00000589857 CREB3L3Q68CJ9 461 aa12.65□□□□□ -0.38
ZNF540-208ENST00000589857 LMBR1LQ6UX01 489 aa12.65□□□□□ -0.38
ZNF540-208ENST00000589857 TRIM44Q96DX7 344 aaPredicted RBP12.65□□□□□ -0.38
ZNF540-208ENST00000589857 HAUS7Q99871 368 aa12.65□□□□□ -0.38
ZNF540-208ENST00000589857 BOLA2Q9H3K6 86 aa12.65□□□□□ -0.38
ZNF540-208ENST00000589857 AKAP2Q9Y2D5 859 aa12.65□□□□□ -0.38
ZNF540-208ENST00000589857 ZDHHC9Q9Y397 364 aa12.65□□□□□ -0.38
ZNF540-208ENST00000589857 UBR3Q6ZT12 1888 aa12.64□□□□□ -0.39
ZNF540-208ENST00000589857 ATP5J2-PTCD1G3V325 749 aa12.64□□□□□ -0.39
ZNF540-208ENST00000589857 PTCD1O75127 700 aaKnown RBP12.64□□□□□ -0.39
ZNF540-208ENST00000589857 ZPR1O75312 459 aa12.64□□□□□ -0.39
ZNF540-208ENST00000589857 HMGB1P09429 215 aaKnown RBP12.64□□□□□ -0.39
ZNF540-208ENST00000589857 EPHA10Q5JZY3 1008 aa12.64□□□□□ -0.39
ZNF540-208ENST00000589857 BLOC1S2Q6QNY1 142 aa12.64□□□□□ -0.39
ZNF540-208ENST00000589857 NOL8Q76FK4 1167 aaKnown RBP12.64□□□□□ -0.39
ZNF540-208ENST00000589857 TMEM87AQ8NBN3 555 aa12.64□□□□□ -0.39
ZNF540-208ENST00000589857 CHMP3Q9Y3E7 222 aa12.64□□□□□ -0.39
ZNF540-208ENST00000589857 NBPF26B4DH59 902 aa12.63□□□□□ -0.39
ZNF540-208ENST00000589857 EYA2O00167 538 aa12.63□□□□□ -0.39
ZNF540-208ENST00000589857 SLC27A2O14975 620 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms