RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	SCNN1D	P51172	638 aa		12.51	□□□□□ -0.41
PTPN2-208	ENST00000589216	C16orf71	Q8IYS4	520 aa	Predicted RBP	12.51	□□□□□ -0.41
PTPN2-208	ENST00000589216	GPC2	Q8N158	579 aa		12.51	□□□□□ -0.41
PTPN2-208	ENST00000589216	CDC5L	Q99459	802 aa	Known RBP	12.51	□□□□□ -0.41
PTPN2-208	ENST00000589216	DBNDD1	Q9H9R9	158 aa		12.51	□□□□□ -0.41
PTPN2-208	ENST00000589216	PODXL2	Q9NZ53	605 aa		12.51	□□□□□ -0.41
PTPN2-208	ENST00000589216	TNN	Q9UQP3	1299 aa		12.51	□□□□□ -0.41
PTPN2-208	ENST00000589216	GJA3	Q9Y6H8	435 aa		12.51	□□□□□ -0.41
PTPN2-208	ENST00000589216	C6orf229	H3BNL8	230 aa		12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	RIMBP2	O15034	1052 aa		12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	RAD17	O75943	681 aa		12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	HSPA6	P17066	643 aa		12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	CXCL9	Q07325	125 aa		12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	TAF1D	Q9H5J8	278 aa	Predicted RBP	12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	C9orf78	Q9NZ63	289 aa	Predicted RBP	12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	ZNRF3	Q9ULT6	936 aa		12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	NOB1	Q9ULX3	412 aa	Known RBP	12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	UTY	O14607	1347 aa		12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	XDH	P47989	1333 aa		12.5	□□□□□ -0.41
PTPN2-208	ENST00000589216	SHTN1	A0MZ66	631 aa		12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	KLRK1	P26718	216 aa		12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	EIF6	P56537	245 aa	Known RBP	12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	WASHC4	Q2M389	1173 aa		12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	LMBR1L	Q6UX01	489 aa		12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	ANKRD44	Q8N8A2	993 aa		12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	VPS33B	Q9H267	617 aa		12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	BSDC1	Q9NW68	430 aa	Predicted RBP	12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	ANKIB1	Q9P2G1	1089 aa		12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	MINPP1	Q9UNW1	487 aa		12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	CHMP3	Q9Y3E7	222 aa		12.49	□□□□□ -0.41
PTPN2-208	ENST00000589216	KIF16B	Q96L93	1317 aa		12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	ECE2	O60344	883 aa		12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	BCAR3	O75815	825 aa		12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	BRPF1	P55201	1214 aa	Predicted RBP	12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	HTRA3	P83110	453 aa		12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	DOK7	Q18PE1	504 aa		12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	ZNF594	Q96JF6	807 aa	Predicted RBP	12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	USP44	Q9H0E7	712 aa		12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	BICC1	Q9H694	974 aa	Known RBP	12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	KCNQ5	Q9NR82	932 aa		12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	HACL1	Q9UJ83	578 aa		12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	GGA1	Q9UJY5	639 aa		12.48	□□□□□ -0.41
PTPN2-208	ENST00000589216	MED23	Q9ULK4	1368 aa		12.47	□□□□□ -0.41
PTPN2-208	ENST00000589216	ANKRD18B	A2A2Z9	1011 aa		12.47	□□□□□ -0.41
PTPN2-208	ENST00000589216	IQCA1L	A6NCM1	817 aa		12.47	□□□□□ -0.41
PTPN2-208	ENST00000589216	SNAP23	O00161	211 aa		12.47	□□□□□ -0.41
PTPN2-208	ENST00000589216	EPHX2	P34913	555 aa		12.47	□□□□□ -0.41
PTPN2-208	ENST00000589216	IGHMBP2	P38935	993 aa	Known RBP	12.47	□□□□□ -0.41
PTPN2-208	ENST00000589216	EPS15	P42566	896 aa		12.47	□□□□□ -0.41
PTPN2-208	ENST00000589216	GMPS	P49915	693 aa	Predicted RBP	12.47	□□□□□ -0.41
PTPN2-208	ENST00000589216	SMC1B	Q8NDV3	1235 aa		12.47	□□□□□ -0.41
PTPN2-208	ENST00000589216	RNF39	Q9H2S5	420 aa		12.47	□□□□□ -0.41
PTPN2-208	ENST00000589216	IRS2	Q9Y4H2	1338 aa		12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	CCT4	P50991	539 aa	Known RBP	12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	CHRND	Q07001	517 aa		12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	FSTL1	Q12841	308 aa		12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	IFIT5	Q13325	482 aa	Known RBP	12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	RABL6	Q3YEC7	729 aa	Predicted RBP	12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	EAPP	Q56P03	285 aa	Predicted RBP	12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	CIAPIN1	Q6FI81	312 aa		12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	TXNRD3	Q86VQ6	643 aa		12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	EYA3	Q99504	573 aa		12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	GPRC5D	Q9NZD1	345 aa		12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.46	□□□□□ -0.41
PTPN2-208	ENST00000589216	ARAP2	Q8WZ64	1704 aa		12.45	□□□□□ -0.42
PTPN2-208	ENST00000589216	PSMD14	O00487	310 aa		12.45	□□□□□ -0.42
PTPN2-208	ENST00000589216	TRIM27	P14373	513 aa		12.45	□□□□□ -0.42
PTPN2-208	ENST00000589216	HELB	Q8NG08	1087 aa	Predicted RBP	12.45	□□□□□ -0.42
PTPN2-208	ENST00000589216	MPHOSPH8	Q99549	860 aa		12.45	□□□□□ -0.42
PTPN2-208	ENST00000589216	PUS3	Q9BZE2	481 aa	Known RBP	12.45	□□□□□ -0.42
PTPN2-208	ENST00000589216	API5	Q9BZZ5	524 aa	Known RBP	12.45	□□□□□ -0.42
PTPN2-208	ENST00000589216	TAF5L	O75529	589 aa		12.44	□□□□□ -0.42
PTPN2-208	ENST00000589216	ATP2B4	P23634	1241 aa		12.44	□□□□□ -0.42
PTPN2-208	ENST00000589216	CHADL	Q6NUI6	762 aa		12.44	□□□□□ -0.42
PTPN2-208	ENST00000589216	LDHD	Q86WU2	507 aa		12.44	□□□□□ -0.42
PTPN2-208	ENST00000589216	KLHDC4	Q8TBB5	520 aa		12.44	□□□□□ -0.42
PTPN2-208	ENST00000589216	TRPM4	Q8TD43	1214 aa		12.44	□□□□□ -0.42
PTPN2-208	ENST00000589216	MEIS3	Q99687	375 aa		12.44	□□□□□ -0.42
PTPN2-208	ENST00000589216	ZC3H12C	Q9C0D7	883 aa	Known RBP	12.44	□□□□□ -0.42
PTPN2-208	ENST00000589216	ZNF609	O15014	1411 aa		12.44	□□□□□ -0.42
PTPN2-208	ENST00000589216	ZNF804B	A4D1E1	1349 aa		12.43	□□□□□ -0.42
PTPN2-208	ENST00000589216	TRPM7	Q96QT4	1865 aa		12.43	□□□□□ -0.42
PTPN2-208	ENST00000589216	EGFR	P00533	1210 aa		12.43	□□□□□ -0.42
PTPN2-208	ENST00000589216	LMOD1	P29536	600 aa	Predicted RBP	12.43	□□□□□ -0.42
PTPN2-208	ENST00000589216	CCDC57	Q2TAC2	916 aa		12.43	□□□□□ -0.42
PTPN2-208	ENST00000589216	MAP1S	Q66K74	1059 aa	Predicted RBP	12.43	□□□□□ -0.42
PTPN2-208	ENST00000589216	FRAT1	Q92837	279 aa	Predicted RBP	12.43	□□□□□ -0.42
PTPN2-208	ENST00000589216	PASK	Q96RG2	1323 aa		12.42	□□□□□ -0.42
PTPN2-208	ENST00000589216	TNIP1	Q15025	636 aa		12.42	□□□□□ -0.42
PTPN2-208	ENST00000589216	MICALL2	Q8IY33	904 aa		12.42	□□□□□ -0.42
PTPN2-208	ENST00000589216	CNKSR2	Q8WXI2	1034 aa		12.42	□□□□□ -0.42
PTPN2-208	ENST00000589216	CLUAP1	Q96AJ1	413 aa		12.42	□□□□□ -0.42
PTPN2-208	ENST00000589216	MYH13	Q9UKX3	1938 aa		12.42	□□□□□ -0.42
PTPN2-208	ENST00000589216	UBTFL1	P0CB47	393 aa	Predicted RBP	12.41	□□□□□ -0.42
PTPN2-208	ENST00000589216	RFX5	P48382	616 aa	Predicted RBP	12.41	□□□□□ -0.42
PTPN2-208	ENST00000589216	APLP1	P51693	650 aa		12.41	□□□□□ -0.42
PTPN2-208	ENST00000589216	HIRA	P54198	1017 aa	Predicted RBP	12.41	□□□□□ -0.42
PTPN2-208	ENST00000589216	FMR1	Q06787	632 aa	Known RBP eCLIP	12.41	□□□□□ -0.42
PTPN2-208	ENST00000589216	LRRC24	Q50LG9	513 aa		12.41	□□□□□ -0.42
PTPN2-208	ENST00000589216	TAF7L	Q5H9L4	462 aa		12.41	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms