RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 NEURL1BA8MQ27 555 aa18.4■□□□□ 0.54
VMP1-206ENST00000587945 FOXN1O15353 648 aa18.4■□□□□ 0.54
VMP1-206ENST00000587945 CTSWP56202 376 aa18.4■□□□□ 0.54
VMP1-206ENST00000587945 NEXNQ0ZGT2 675 aa18.4■□□□□ 0.54
VMP1-206ENST00000587945 NCBP3Q53F19 620 aaKnown RBP18.4■□□□□ 0.54
VMP1-206ENST00000587945 TNS4Q8IZW8 715 aa18.4■□□□□ 0.54
VMP1-206ENST00000587945 GLIS2Q9BZE0 524 aaPredicted RBP18.4■□□□□ 0.54
VMP1-206ENST00000587945 ZC3H12CQ9C0D7 883 aaKnown RBP18.4■□□□□ 0.54
VMP1-206ENST00000587945 PODXL2Q9NZ53 605 aa18.4■□□□□ 0.54
VMP1-206ENST00000587945 GGA1Q9UJY5 639 aa18.4■□□□□ 0.54
VMP1-206ENST00000587945 CDHR2Q9BYE9 1310 aa18.4■□□□□ 0.54
VMP1-206ENST00000587945 H7C1D1 291 aa18.39■□□□□ 0.53
VMP1-206ENST00000587945 SAMD7Q7Z3H4 446 aa18.39■□□□□ 0.53
VMP1-206ENST00000587945 ANKRD18AQ8IVF6 992 aa18.39■□□□□ 0.53
VMP1-206ENST00000587945 PGAP2Q9UHJ9 254 aa18.39■□□□□ 0.53
VMP1-206ENST00000587945 LRRC37AA6NMS7 1700 aa18.39■□□□□ 0.53
VMP1-206ENST00000587945 RTL9Q8NET4 1388 aa18.39■□□□□ 0.53
VMP1-206ENST00000587945 EXOSC9Q06265 439 aaKnown RBP18.38■□□□□ 0.53
VMP1-206ENST00000587945 FLIIQ13045 1269 aa18.38■□□□□ 0.53
VMP1-206ENST00000587945 PAXIP1Q6ZW49 1069 aaPredicted RBP18.38■□□□□ 0.53
VMP1-206ENST00000587945 WDR63Q8IWG1 891 aa18.38■□□□□ 0.53
VMP1-206ENST00000587945 TTLL11Q8NHH1 800 aa18.38■□□□□ 0.53
VMP1-206ENST00000587945 DPF2Q92785 391 aa18.38■□□□□ 0.53
VMP1-206ENST00000587945 GREM2Q9H772 168 aa18.38■□□□□ 0.53
VMP1-206ENST00000587945 SPINK5Q9NQ38 1064 aaPredicted RBP18.38■□□□□ 0.53
VMP1-206ENST00000587945 WDR33Q9C0J8 1336 aaKnown RBP18.38■□□□□ 0.53
VMP1-206ENST00000587945 WTIPA6NIX2 430 aaPredicted RBP18.37■□□□□ 0.53
VMP1-206ENST00000587945 VAMP4O75379 141 aa18.37■□□□□ 0.53
VMP1-206ENST00000587945 CELF2O95319 508 aaKnown RBP18.37■□□□□ 0.53
VMP1-206ENST00000587945 EGFRP00533 1210 aa18.37■□□□□ 0.53
VMP1-206ENST00000587945 GRM1Q13255 1194 aa18.37■□□□□ 0.53
VMP1-206ENST00000587945 TBC1D10BQ4KMP7 808 aaPredicted RBP18.37■□□□□ 0.53
VMP1-206ENST00000587945 UBE3BQ7Z3V4 1068 aa18.37■□□□□ 0.53
VMP1-206ENST00000587945 FAM9BQ8IZU0 186 aa18.37■□□□□ 0.53
VMP1-206ENST00000587945 ZC3H15Q8WU90 426 aaKnown RBP18.37■□□□□ 0.53
VMP1-206ENST00000587945 G3V3G9 751 aa18.36■□□□□ 0.53
VMP1-206ENST00000587945 H7C1W4 665 aa18.36■□□□□ 0.53
VMP1-206ENST00000587945 CAPN15O75808 1086 aa18.36■□□□□ 0.53
VMP1-206ENST00000587945 FKBP5Q13451 457 aaPredicted RBP18.36■□□□□ 0.53
VMP1-206ENST00000587945 RBM26Q5T8P6 1007 aaKnown RBP18.36■□□□□ 0.53
VMP1-206ENST00000587945 DCAF8Q5TAQ9 597 aa18.36■□□□□ 0.53
VMP1-206ENST00000587945 CYP4F22Q6NT55 531 aa18.36■□□□□ 0.53
VMP1-206ENST00000587945 DLK2Q6UY11 383 aa18.36■□□□□ 0.53
VMP1-206ENST00000587945 AIDAQ96BJ3 306 aa18.36■□□□□ 0.53
VMP1-206ENST00000587945 ZNF408Q9H9D4 720 aa18.36■□□□□ 0.53
VMP1-206ENST00000587945 WBP1LQ9NX94 342 aa18.36■□□□□ 0.53
VMP1-206ENST00000587945 XDHP47989 1333 aa18.35■□□□□ 0.53
VMP1-206ENST00000587945 USP48Q86UV5 1035 aa18.35■□□□□ 0.53
VMP1-206ENST00000587945 DNAAF4Q8WXU2 420 aa18.35■□□□□ 0.53
VMP1-206ENST00000587945 CAPNS2Q96L46 248 aa18.35■□□□□ 0.53
VMP1-206ENST00000587945 CDC5LQ99459 802 aaKnown RBP18.35■□□□□ 0.53
VMP1-206ENST00000587945 TLL2Q9Y6L7 1015 aa18.35■□□□□ 0.53
VMP1-206ENST00000587945 VIL1P09327 827 aaKnown RBP18.34■□□□□ 0.53
VMP1-206ENST00000587945 RPS12P25398 132 aaKnown RBP18.34■□□□□ 0.53
VMP1-206ENST00000587945 GCKRQ14397 625 aa18.34■□□□□ 0.53
VMP1-206ENST00000587945 CDC37L1Q7L3B6 337 aa18.34■□□□□ 0.53
VMP1-206ENST00000587945 ATP2B4P23634 1241 aa18.33■□□□□ 0.52
VMP1-206ENST00000587945 CTCFP49711 727 aaPredicted RBP18.33■□□□□ 0.52
VMP1-206ENST00000587945 BSDC1Q9NW68 430 aaPredicted RBP18.33■□□□□ 0.52
VMP1-206ENST00000587945 MINPP1Q9UNW1 487 aa18.33■□□□□ 0.52
VMP1-206ENST00000587945 F6X3S4 739 aa18.32■□□□□ 0.52
VMP1-206ENST00000587945 CASP7P55210 303 aa18.32■□□□□ 0.52
VMP1-206ENST00000587945 SAPCD2Q86UD0 394 aa18.32■□□□□ 0.52
VMP1-206ENST00000587945 AOC2O75106 756 aa18.31■□□□□ 0.52
VMP1-206ENST00000587945 ECE1P42892 770 aa18.31■□□□□ 0.52
VMP1-206ENST00000587945 LBX1P52954 281 aa18.31■□□□□ 0.52
VMP1-206ENST00000587945 FAM161AQ3B820 660 aa18.31■□□□□ 0.52
VMP1-206ENST00000587945 LINS1Q8NG48 757 aa18.31■□□□□ 0.52
VMP1-206ENST00000587945 PLA2G12BQ9BX93 195 aa18.31■□□□□ 0.52
VMP1-206ENST00000587945 MYH16Q9H6N6 1097 aa18.31■□□□□ 0.52
VMP1-206ENST00000587945 ASTN2O75129 1339 aaPredicted RBP18.3■□□□□ 0.52
VMP1-206ENST00000587945 ADM5C9JUS6 153 aa18.3■□□□□ 0.52
VMP1-206ENST00000587945 ITGA6P23229 1130 aa18.3■□□□□ 0.52
VMP1-206ENST00000587945 MAP2K1Q02750 393 aaPredicted RBP18.3■□□□□ 0.52
VMP1-206ENST00000587945 KIF4BQ2VIQ3 1234 aa18.3■□□□□ 0.52
VMP1-206ENST00000587945 RSBN1LQ6PCB5 846 aaPredicted RBP18.3■□□□□ 0.52
VMP1-206ENST00000587945 KRT26Q7Z3Y9 468 aa18.3■□□□□ 0.52
VMP1-206ENST00000587945 PRDM10Q9NQV6 1147 aa18.3■□□□□ 0.52
VMP1-206ENST00000587945 HSPA8P11142 646 aaKnown RBP18.29■□□□□ 0.52
VMP1-206ENST00000587945 IGHMBP2P38935 993 aaKnown RBP18.29■□□□□ 0.52
VMP1-206ENST00000587945 CCT4P50991 539 aaKnown RBP18.29■□□□□ 0.52
VMP1-206ENST00000587945 CSF1RP07333 972 aa18.28■□□□□ 0.52
VMP1-206ENST00000587945 DCPSQ96C86 337 aaKnown RBP18.28■□□□□ 0.52
VMP1-206ENST00000587945 USP17L3A6NCW0 530 aa18.27■□□□□ 0.52
VMP1-206ENST00000587945 USP17L4A6NCW7 530 aa18.27■□□□□ 0.52
VMP1-206ENST00000587945 ZNF280AP59817 542 aaPredicted RBP18.27■□□□□ 0.52
VMP1-206ENST00000587945 BEND3Q5T5X7 828 aa18.27■□□□□ 0.52
VMP1-206ENST00000587945 USP17L1Q7RTZ2 530 aa18.27■□□□□ 0.52
VMP1-206ENST00000587945 PODNQ7Z5L7 613 aa18.27■□□□□ 0.52
VMP1-206ENST00000587945 TXNRD3Q86VQ6 643 aa18.27■□□□□ 0.52
VMP1-206ENST00000587945 AGBL3Q8NEM8 1001 aa18.27■□□□□ 0.52
VMP1-206ENST00000587945 GMLQ99445 158 aa18.27■□□□□ 0.52
VMP1-206ENST00000587945 MXD3Q9BW11 206 aa18.27■□□□□ 0.52
VMP1-206ENST00000587945 GGA3Q9NZ52 723 aa18.27■□□□□ 0.52
VMP1-206ENST00000587945 KLRK1P26718 216 aa18.26■□□□□ 0.51
VMP1-206ENST00000587945 FBXW7Q969H0 707 aa18.26■□□□□ 0.51
VMP1-206ENST00000587945 MPHOSPH8Q99549 860 aa18.26■□□□□ 0.51
VMP1-206ENST00000587945 MED23Q9ULK4 1368 aa18.26■□□□□ 0.51
VMP1-206ENST00000587945 USP17L8P0C7I0 530 aa18.25■□□□□ 0.51
VMP1-206ENST00000587945 HUNKP57058 714 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms