RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ZBTB12Q9Y330 459 aaPredicted RBP15.36■□□□□ 0.05
LIG3-209ENST00000586435 PCCAP05165 728 aaPredicted RBP15.35■□□□□ 0.05
LIG3-209ENST00000586435 BRPF1P55201 1214 aaPredicted RBP15.35■□□□□ 0.05
LIG3-209ENST00000586435 RIMBP2O15034 1052 aa15.34■□□□□ 0.05
LIG3-209ENST00000586435 PDE8AO60658 829 aa15.34■□□□□ 0.05
LIG3-209ENST00000586435 AOC2O75106 756 aa15.34■□□□□ 0.05
LIG3-209ENST00000586435 CCDC152Q4G0S7 254 aa15.34■□□□□ 0.05
LIG3-209ENST00000586435 SAMD7Q7Z3H4 446 aa15.34■□□□□ 0.05
LIG3-209ENST00000586435 ABHD8Q96I13 439 aa15.34■□□□□ 0.05
LIG3-209ENST00000586435 MYD88Q99836 296 aa15.34■□□□□ 0.05
LIG3-209ENST00000586435 CACNA1FO60840 1977 aa15.33■□□□□ 0.05
LIG3-209ENST00000586435 DDX58O95786 925 aaKnown RBP15.33■□□□□ 0.04
LIG3-209ENST00000586435 CCDC30Q5VVM6 783 aa15.33■□□□□ 0.04
LIG3-209ENST00000586435 METTL22Q9BUU2 404 aaPredicted RBP15.33■□□□□ 0.04
LIG3-209ENST00000586435 ZC3H12CQ9C0D7 883 aaKnown RBP15.33■□□□□ 0.04
LIG3-209ENST00000586435 ZNF408Q9H9D4 720 aa15.33■□□□□ 0.04
LIG3-209ENST00000586435 SEC31BQ9NQW1 1179 aa15.33■□□□□ 0.04
LIG3-209ENST00000586435 CWC25Q9NXE8 425 aaPredicted RBP15.33■□□□□ 0.04
LIG3-209ENST00000586435 SPEF2Q9C093 1822 aa15.33■□□□□ 0.04
LIG3-209ENST00000586435 CASP8AP2Q9UKL3 1982 aa15.33■□□□□ 0.04
LIG3-209ENST00000586435 ELL2O00472 640 aaPredicted RBP15.32■□□□□ 0.04
LIG3-209ENST00000586435 EGFRP00533 1210 aa15.32■□□□□ 0.04
LIG3-209ENST00000586435 VIL1P09327 827 aaKnown RBP15.32■□□□□ 0.04
LIG3-209ENST00000586435 NOGQ13253 232 aa15.32■□□□□ 0.04
LIG3-209ENST00000586435 DOK7Q18PE1 504 aa15.32■□□□□ 0.04
LIG3-209ENST00000586435 TBC1D10BQ4KMP7 808 aaPredicted RBP15.32■□□□□ 0.04
LIG3-209ENST00000586435 USP48Q86UV5 1035 aa15.32■□□□□ 0.04
LIG3-209ENST00000586435 C8orf58Q8NAV2 365 aa15.32■□□□□ 0.04
LIG3-209ENST00000586435 GGA1Q9UJY5 639 aa15.32■□□□□ 0.04
LIG3-209ENST00000586435 ZNF646O15015 1829 aaPredicted RBP15.31■□□□□ 0.04
LIG3-209ENST00000586435 UFL1O94874 794 aa15.31■□□□□ 0.04
LIG3-209ENST00000586435 KIF4BQ2VIQ3 1234 aa15.31■□□□□ 0.04
LIG3-209ENST00000586435 KRT26Q7Z3Y9 468 aa15.31■□□□□ 0.04
LIG3-209ENST00000586435 KCNQ5Q9NR82 932 aa15.31■□□□□ 0.04
LIG3-209ENST00000586435 ANKIB1Q9P2G1 1089 aa15.31■□□□□ 0.04
LIG3-209ENST00000586435 XDHP47989 1333 aa15.3■□□□□ 0.04
LIG3-209ENST00000586435 HUNKP57058 714 aa15.3■□□□□ 0.04
LIG3-209ENST00000586435 AGBL3Q8NEM8 1001 aa15.3■□□□□ 0.04
LIG3-209ENST00000586435 DCPSQ96C86 337 aaKnown RBP15.3■□□□□ 0.04
LIG3-209ENST00000586435 AKAP11Q9UKA4 1901 aa15.3■□□□□ 0.04
LIG3-209ENST00000586435 CCDC27Q2M243 656 aa15.29■□□□□ 0.04
LIG3-209ENST00000586435 KSR2Q6VAB6 950 aa15.29■□□□□ 0.04
LIG3-209ENST00000586435 ANKRD18AQ8IVF6 992 aa15.29■□□□□ 0.04
LIG3-209ENST00000586435 GBA2Q9HCG7 927 aaPredicted RBP15.29■□□□□ 0.04
LIG3-209ENST00000586435 MAP3K2Q9Y2U5 619 aa15.29■□□□□ 0.04
LIG3-209ENST00000586435 ADM5C9JUS6 153 aa15.28■□□□□ 0.04
LIG3-209ENST00000586435 G3V3G9 751 aa15.28■□□□□ 0.04
LIG3-209ENST00000586435 ATP2B4P23634 1241 aa15.28■□□□□ 0.04
LIG3-209ENST00000586435 CTSWP56202 376 aa15.28■□□□□ 0.04
LIG3-209ENST00000586435 ZNF280AP59817 542 aaPredicted RBP15.28■□□□□ 0.04
LIG3-209ENST00000586435 DCAF8Q5TAQ9 597 aa15.28■□□□□ 0.04
LIG3-209ENST00000586435 RGMBQ6NW40 437 aa15.28■□□□□ 0.04
LIG3-209ENST00000586435 RSBN1LQ6PCB5 846 aaPredicted RBP15.28■□□□□ 0.04
LIG3-209ENST00000586435 TSPYL6Q8N831 410 aa15.28■□□□□ 0.04
LIG3-209ENST00000586435 CDC5LQ99459 802 aaKnown RBP15.28■□□□□ 0.04
LIG3-209ENST00000586435 GGA3Q9NZ52 723 aa15.28■□□□□ 0.04
LIG3-209ENST00000586435 TSKSQ9UJT2 592 aa15.28■□□□□ 0.04
LIG3-209ENST00000586435 MED23Q9ULK4 1368 aa15.27■□□□□ 0.04
LIG3-209ENST00000586435 PAPPA2Q9BXP8 1791 aa15.27■□□□□ 0.04
LIG3-209ENST00000586435 FAM155AB1AL88 458 aaPredicted RBP15.27■□□□□ 0.04
LIG3-209ENST00000586435 IGKV5-2P06315 115 aa15.27■□□□□ 0.04
LIG3-209ENST00000586435 RBM26Q5T8P6 1007 aaKnown RBP15.27■□□□□ 0.04
LIG3-209ENST00000586435 DLK2Q6UY11 383 aa15.27■□□□□ 0.04
LIG3-209ENST00000586435 PODNQ7Z5L7 613 aa15.27■□□□□ 0.04
LIG3-209ENST00000586435 SULF1Q8IWU6 871 aa15.27■□□□□ 0.04
LIG3-209ENST00000586435 C2orf69Q8N8R5 385 aa15.27■□□□□ 0.04
LIG3-209ENST00000586435 PI4KAP2A4QPH2 592 aa15.26■□□□□ 0.03
LIG3-209ENST00000586435 NEXNQ0ZGT2 675 aa15.26■□□□□ 0.03
LIG3-209ENST00000586435 NCBP3Q53F19 620 aaKnown RBP15.26■□□□□ 0.03
LIG3-209ENST00000586435 PI4KAP1Q8N8J0 262 aa15.26■□□□□ 0.03
LIG3-209ENST00000586435 TTLL11Q8NHH1 800 aa15.26■□□□□ 0.03
LIG3-209ENST00000586435 JARID2Q92833 1246 aaPredicted RBP15.26■□□□□ 0.03
LIG3-209ENST00000586435 CCDC102AQ96A19 550 aa15.26■□□□□ 0.03
LIG3-209ENST00000586435 CCDC85AQ96PX6 553 aaPredicted RBP15.26■□□□□ 0.03
LIG3-209ENST00000586435 ZIC5Q96T25 663 aa15.26■□□□□ 0.03
LIG3-209ENST00000586435 GMLQ99445 158 aa15.26■□□□□ 0.03
LIG3-209ENST00000586435 STK31Q9BXU1 1019 aa15.26■□□□□ 0.03
LIG3-209ENST00000586435 BSDC1Q9NW68 430 aaPredicted RBP15.26■□□□□ 0.03
LIG3-209ENST00000586435 PITPNM2Q9BZ72 1349 aa15.25■□□□□ 0.03
LIG3-209ENST00000586435 SAGE1Q9NXZ1 904 aa15.25■□□□□ 0.03
LIG3-209ENST00000586435 ASTN2O75129 1339 aaPredicted RBP15.24■□□□□ 0.03
LIG3-209ENST00000586435 IL16Q14005 1332 aa15.24■□□□□ 0.03
LIG3-209ENST00000586435 USP17L3A6NCW0 530 aa15.24■□□□□ 0.03
LIG3-209ENST00000586435 USP17L4A6NCW7 530 aa15.24■□□□□ 0.03
LIG3-209ENST00000586435 NEURL1BA8MQ27 555 aa15.24■□□□□ 0.03
LIG3-209ENST00000586435 SLC10A3P09131 477 aa15.24■□□□□ 0.03
LIG3-209ENST00000586435 USP17L8P0C7I0 530 aa15.24■□□□□ 0.03
LIG3-209ENST00000586435 USP17L1Q7RTZ2 530 aa15.24■□□□□ 0.03
LIG3-209ENST00000586435 WWC1Q8IX03 1113 aa15.24■□□□□ 0.03
LIG3-209ENST00000586435 TSR2Q969E8 191 aaKnown RBP15.24■□□□□ 0.03
LIG3-209ENST00000586435 CDCA5Q96FF9 252 aa15.24■□□□□ 0.03
LIG3-209ENST00000586435 RGS19P49795 217 aa15.23■□□□□ 0.03
LIG3-209ENST00000586435 ZNF157P51786 506 aaPredicted RBP15.23■□□□□ 0.03
LIG3-209ENST00000586435 FKBP1BP68106 108 aa15.23■□□□□ 0.03
LIG3-209ENST00000586435 SCARF1Q14162 830 aa15.23■□□□□ 0.03
LIG3-209ENST00000586435 TWISTNBQ3B726 338 aaPredicted RBP15.23■□□□□ 0.03
LIG3-209ENST00000586435 ANGEL2Q5VTE6 544 aaKnown RBP15.23■□□□□ 0.03
LIG3-209ENST00000586435 PLA2G12BQ9BX93 195 aa15.23■□□□□ 0.03
LIG3-209ENST00000586435 MCOLN1Q9GZU1 580 aa15.23■□□□□ 0.03
LIG3-209ENST00000586435 GREM2Q9H772 168 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms