RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 FAM89AQ96GI7 184 aa13.53□□□□□ -0.24
LIG3-204ENST00000585740 ACSBG1Q96GR2 724 aa13.53□□□□□ -0.24
LIG3-204ENST00000585740 TRMT112Q9UI30 125 aaKnown RBP13.53□□□□□ -0.24
LIG3-204ENST00000585740 A0A1B0GUL7 405 aa13.52□□□□□ -0.25
LIG3-204ENST00000585740 GPTP24298 496 aa13.52□□□□□ -0.25
LIG3-204ENST00000585740 CRKLP46109 303 aaKnown RBP13.52□□□□□ -0.25
LIG3-204ENST00000585740 PTH1RQ03431 593 aa13.52□□□□□ -0.25
LIG3-204ENST00000585740 CCDC158Q5M9N0 1113 aa13.52□□□□□ -0.25
LIG3-204ENST00000585740 INTS5Q6P9B9 1019 aaKnown RBP13.52□□□□□ -0.25
LIG3-204ENST00000585740 ZNF594Q96JF6 807 aaPredicted RBP13.52□□□□□ -0.25
LIG3-204ENST00000585740 ZSCAN31Q96LW9 406 aaPredicted RBP13.52□□□□□ -0.25
LIG3-204ENST00000585740 FAM227BQ96M60 508 aa13.52□□□□□ -0.25
LIG3-204ENST00000585740 DNAJC2Q99543 621 aaKnown RBP13.52□□□□□ -0.25
LIG3-204ENST00000585740 RBM8AQ9Y5S9 174 aaKnown RBP13.52□□□□□ -0.25
LIG3-204ENST00000585740 SH3TC1Q8TE82 1336 aa13.52□□□□□ -0.25
LIG3-204ENST00000585740 MYH14Q7Z406 1995 aaKnown RBP13.52□□□□□ -0.25
LIG3-204ENST00000585740 MYH7P12883 1935 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 A0A0D9SFI3 127 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 CYP2E1P05181 493 aaPredicted RBP13.51□□□□□ -0.25
LIG3-204ENST00000585740 IFIT1P09914 478 aaKnown RBP13.51□□□□□ -0.25
LIG3-204ENST00000585740 KRT32Q14532 448 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 MCMDC2Q4G0Z9 681 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 VPS53Q5VIR6 699 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 CREB3L3Q68CJ9 461 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 PRPF40BQ6NWY9 871 aaKnown RBP13.51□□□□□ -0.25
LIG3-204ENST00000585740 TTLL11Q8NHH1 800 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 TTC14Q96N46 770 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 HELLSQ9NRZ9 838 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 PAG1Q9NWQ8 432 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 TBC1D2BQ9UPU7 963 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 ZNF652Q9Y2D9 606 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 CYP46A1Q9Y6A2 500 aa13.51□□□□□ -0.25
LIG3-204ENST00000585740 U3KPZ7 1027 aaPredicted RBP13.51□□□□□ -0.25
LIG3-204ENST00000585740 SSFA2P28290 1259 aa13.5□□□□□ -0.25
LIG3-204ENST00000585740 TSGA10IPQ3SY00 556 aa13.5□□□□□ -0.25
LIG3-204ENST00000585740 TTC39AQ5SRH9 613 aa13.5□□□□□ -0.25
LIG3-204ENST00000585740 GORABQ5T7V8 394 aa13.5□□□□□ -0.25
LIG3-204ENST00000585740 RASEFQ8IZ41 740 aa13.5□□□□□ -0.25
LIG3-204ENST00000585740 UTP14AQ9BVJ6 771 aaKnown RBP13.5□□□□□ -0.25
LIG3-204ENST00000585740 PUS3Q9BZE2 481 aaKnown RBP13.5□□□□□ -0.25
LIG3-204ENST00000585740 UPF3BQ9BZI7 483 aaKnown RBP13.5□□□□□ -0.25
LIG3-204ENST00000585740 ZSWIM6Q9HCJ5 1215 aa13.5□□□□□ -0.25
LIG3-204ENST00000585740 SH2B1Q9NRF2 756 aaPredicted RBP13.5□□□□□ -0.25
LIG3-204ENST00000585740 LIMCH1Q9UPQ0 1083 aa13.5□□□□□ -0.25
LIG3-204ENST00000585740 NHSQ6T4R5 1651 aa13.5□□□□□ -0.25
LIG3-204ENST00000585740 UTRNP46939 3433 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 TRAK2O60296 914 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 TAF5LO75529 589 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 CAMTA2O94983 1202 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 ZFYP08048 801 aaPredicted RBP13.49□□□□□ -0.25
LIG3-204ENST00000585740 CASTP20810 708 aaKnown RBP13.49□□□□□ -0.25
LIG3-204ENST00000585740 ITGA6P23229 1130 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 TIMM10P62072 90 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 ITPK1Q13572 414 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 ANKRD1Q15327 319 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 METTL24Q5JXM2 366 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 IFFO2Q5TF58 517 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 JAKMIP1Q96N16 626 aaKnown RBP13.49□□□□□ -0.25
LIG3-204ENST00000585740 ALDH8A1Q9H2A2 487 aaPredicted RBP13.49□□□□□ -0.25
LIG3-204ENST00000585740 PDRG1Q9NUG6 133 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 RIPOR2Q9Y4F9 1068 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.49□□□□□ -0.25
LIG3-204ENST00000585740 ARAP2Q8WZ64 1704 aa13.49□□□□□ -0.25
LIG3-204ENST00000585740 RIC1Q4ADV7 1423 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 RTL9Q8NET4 1388 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 RPAP1Q9BWH6 1393 aaPredicted RBP13.48□□□□□ -0.25
LIG3-204ENST00000585740 UBN2Q6ZU65 1347 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 CNTNAP4Q9C0A0 1308 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 SLC27A2O14975 620 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 BAG4O95429 457 aaKnown RBP13.48□□□□□ -0.25
LIG3-204ENST00000585740 ATP2B3Q16720 1220 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 USPL1Q5W0Q7 1092 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 CLEC4GQ6UXB4 293 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 LDHAL6AQ6ZMR3 332 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 RUFY3Q7L099 469 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 ZGPATQ8N5A5 531 aaKnown RBP13.48□□□□□ -0.25
LIG3-204ENST00000585740 XAGE2Q96GT9 111 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 GREM2Q9H772 168 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 CNNM1Q9NRU3 951 aa13.48□□□□□ -0.25
LIG3-204ENST00000585740 DDX60Q8IY21 1712 aaKnown RBP13.47□□□□□ -0.25
LIG3-204ENST00000585740 MROH5Q6ZUA9 1318 aa13.47□□□□□ -0.25
LIG3-204ENST00000585740 GOLIM4O00461 696 aa13.47□□□□□ -0.25
LIG3-204ENST00000585740 PDIA4P13667 645 aaKnown RBP13.47□□□□□ -0.25
LIG3-204ENST00000585740 AK2P54819 239 aa13.47□□□□□ -0.25
LIG3-204ENST00000585740 C1QTNF8P60827 252 aa13.47□□□□□ -0.25
LIG3-204ENST00000585740 DDX46Q7L014 1031 aaKnown RBP13.47□□□□□ -0.25
LIG3-204ENST00000585740 EDC3Q96F86 508 aaKnown RBP13.47□□□□□ -0.25
LIG3-204ENST00000585740 ZNF512BQ96KM6 892 aaPredicted RBP13.47□□□□□ -0.25
LIG3-204ENST00000585740 BTAF1O14981 1849 aa13.47□□□□□ -0.25
LIG3-204ENST00000585740 RNF113AO15541 343 aaKnown RBP13.46□□□□□ -0.25
LIG3-204ENST00000585740 ZBTB7AO95365 584 aa13.46□□□□□ -0.25
LIG3-204ENST00000585740 ZMYM1Q5SVZ6 1142 aa13.46□□□□□ -0.25
LIG3-204ENST00000585740 L1TD1Q5T7N2 865 aaKnown RBP13.46□□□□□ -0.25
LIG3-204ENST00000585740 RC3H1Q5TC82 1133 aaKnown RBP13.46□□□□□ -0.25
LIG3-204ENST00000585740 BLOC1S2Q6QNY1 142 aa13.46□□□□□ -0.25
LIG3-204ENST00000585740 ZNF589Q86UQ0 364 aaPredicted RBP13.46□□□□□ -0.25
LIG3-204ENST00000585740 DSCC1Q9BVC3 393 aa13.46□□□□□ -0.25
LIG3-204ENST00000585740 PDGFDQ9GZP0 370 aaPredicted RBP13.46□□□□□ -0.25
LIG3-204ENST00000585740 ANO8Q9HCE9 1232 aaPredicted RBP13.46□□□□□ -0.25
LIG3-204ENST00000585740 SCN7AQ01118 1682 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms