RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 SCN7AQ01118 1682 aa12.69□□□□□ -0.38
LIG3-203ENST00000585370 CCDC88AQ3V6T2 1871 aa12.68□□□□□ -0.38
LIG3-203ENST00000585370 EPB41L2O43491 1005 aaKnown RBP12.68□□□□□ -0.38
LIG3-203ENST00000585370 REC8O95072 547 aa12.68□□□□□ -0.38
LIG3-203ENST00000585370 SRGNP10124 158 aa12.68□□□□□ -0.38
LIG3-203ENST00000585370 RBM25P49756 843 aaKnown RBP12.68□□□□□ -0.38
LIG3-203ENST00000585370 PTPN12Q05209 780 aaKnown RBP12.68□□□□□ -0.38
LIG3-203ENST00000585370 PARP10Q53GL7 1025 aa12.68□□□□□ -0.38
LIG3-203ENST00000585370 CLEC4GQ6UXB4 293 aa12.68□□□□□ -0.38
LIG3-203ENST00000585370 NLRP10Q86W26 655 aa12.68□□□□□ -0.38
LIG3-203ENST00000585370 ZNF34Q8IZ26 560 aa12.68□□□□□ -0.38
LIG3-203ENST00000585370 CNBD1Q8NA66 436 aa12.68□□□□□ -0.38
LIG3-203ENST00000585370 ECHDC1Q9NTX5 307 aa12.68□□□□□ -0.38
LIG3-203ENST00000585370 PA2G4Q9UQ80 394 aaKnown RBP12.68□□□□□ -0.38
LIG3-203ENST00000585370 ZNF652Q9Y2D9 606 aa12.68□□□□□ -0.38
LIG3-203ENST00000585370 POTECB2RU33 542 aa12.67□□□□□ -0.38
LIG3-203ENST00000585370 CIAO1O76071 339 aa12.67□□□□□ -0.38
LIG3-203ENST00000585370 SASH1O94885 1247 aa12.67□□□□□ -0.38
LIG3-203ENST00000585370 CSF1RP07333 972 aa12.67□□□□□ -0.38
LIG3-203ENST00000585370 VEGFAP15692 232 aaPredicted RBP12.67□□□□□ -0.38
LIG3-203ENST00000585370 ERICH6Q7L0X2 663 aa12.67□□□□□ -0.38
LIG3-203ENST00000585370 NUTM1Q86Y26 1132 aa12.67□□□□□ -0.38
LIG3-203ENST00000585370 SMC1BQ8NDV3 1235 aa12.67□□□□□ -0.38
LIG3-203ENST00000585370 BCL11AQ9H165 835 aa12.67□□□□□ -0.38
LIG3-203ENST00000585370 GPR108Q9NPR9 543 aa12.67□□□□□ -0.38
LIG3-203ENST00000585370 TNRC6CQ9HCJ0 1690 aaKnown RBP12.67□□□□□ -0.38
LIG3-203ENST00000585370 COL11A2P13942 1736 aaPredicted RBP12.66□□□□□ -0.38
LIG3-203ENST00000585370 TRIM6-TRIM34B2RNG4 842 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 IL15P40933 162 aaPredicted RBP12.66□□□□□ -0.38
LIG3-203ENST00000585370 ST5P78524 1137 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 HLFQ16534 295 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 CCDC57Q2TAC2 916 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 ERFEQ4G0M1 354 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 STYK1Q6J9G0 422 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 AACSQ86V21 672 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 CNTROBQ8N137 903 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 IL27Q8NEV9 243 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 CNKSR1Q969H4 720 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 KLRG1Q96E93 195 aa12.66□□□□□ -0.38
LIG3-203ENST00000585370 WDR90Q96KV7 1748 aa12.65□□□□□ -0.38
LIG3-203ENST00000585370 SLX4Q8IY92 1834 aa12.65□□□□□ -0.38
LIG3-203ENST00000585370 NPHP1O15259 732 aa12.65□□□□□ -0.38
LIG3-203ENST00000585370 PRPF40BQ6NWY9 871 aaKnown RBP12.65□□□□□ -0.38
LIG3-203ENST00000585370 NBPF5PQ86XG9 351 aaPredicted RBP12.65□□□□□ -0.38
LIG3-203ENST00000585370 TICAM2Q86XR7 235 aa12.65□□□□□ -0.38
LIG3-203ENST00000585370 PI4K2BQ8TCG2 481 aa12.65□□□□□ -0.38
LIG3-203ENST00000585370 JARID2Q92833 1246 aaPredicted RBP12.65□□□□□ -0.38
LIG3-203ENST00000585370 MASTLQ96GX5 879 aa12.65□□□□□ -0.38
LIG3-203ENST00000585370 TRMT112Q9UI30 125 aaKnown RBP12.65□□□□□ -0.38
LIG3-203ENST00000585370 CHMP3Q9Y3E7 222 aa12.65□□□□□ -0.38
LIG3-203ENST00000585370 FER1L6Q2WGJ9 1857 aa12.65□□□□□ -0.38
LIG3-203ENST00000585370 BCORQ6W2J9 1755 aa12.64□□□□□ -0.39
LIG3-203ENST00000585370 KLRG2A4D1S0 409 aaPredicted RBP12.64□□□□□ -0.39
LIG3-203ENST00000585370 EYA2O00167 538 aa12.64□□□□□ -0.39
LIG3-203ENST00000585370 HIP1O00291 1037 aa12.64□□□□□ -0.39
LIG3-203ENST00000585370 PDE8AO60658 829 aa12.64□□□□□ -0.39
LIG3-203ENST00000585370 IFIT5Q13325 482 aaKnown RBP12.64□□□□□ -0.39
LIG3-203ENST00000585370 DPY19L2Q6NUT2 758 aa12.64□□□□□ -0.39
LIG3-203ENST00000585370 C7orf43Q8WVR3 580 aa12.64□□□□□ -0.39
LIG3-203ENST00000585370 RILPL2Q969X0 211 aa12.64□□□□□ -0.39
LIG3-203ENST00000585370 UTP14AQ9BVJ6 771 aaKnown RBP12.64□□□□□ -0.39
LIG3-203ENST00000585370 SIL1Q9H173 461 aa12.64□□□□□ -0.39
LIG3-203ENST00000585370 TAOK3Q9H2K8 898 aa12.64□□□□□ -0.39
LIG3-203ENST00000585370 LTBP3Q9NS15 1303 aa12.63□□□□□ -0.39
LIG3-203ENST00000585370 IRS4O14654 1257 aaPredicted RBP12.63□□□□□ -0.39
LIG3-203ENST00000585370 TPTE2Q6XPS3 522 aa12.63□□□□□ -0.39
LIG3-203ENST00000585370 JMYQ8N9B5 988 aa12.63□□□□□ -0.39
LIG3-203ENST00000585370 RUFY2Q8WXA3 655 aa12.63□□□□□ -0.39
LIG3-203ENST00000585370 EAF2Q96CJ1 260 aaPredicted RBP12.63□□□□□ -0.39
LIG3-203ENST00000585370 EVI5LQ96CN4 794 aa12.63□□□□□ -0.39
LIG3-203ENST00000585370 FAM89AQ96GI7 184 aa12.63□□□□□ -0.39
LIG3-203ENST00000585370 USP26Q9BXU7 913 aa12.63□□□□□ -0.39
LIG3-203ENST00000585370 NIP7Q9Y221 180 aaKnown RBP eCLIP12.63□□□□□ -0.39
LIG3-203ENST00000585370 AKAP2Q9Y2D5 859 aa12.63□□□□□ -0.39
LIG3-203ENST00000585370 SH3TC1Q8TE82 1336 aa12.62□□□□□ -0.39
LIG3-203ENST00000585370 TIAM2Q8IVF5 1701 aa12.62□□□□□ -0.39
LIG3-203ENST00000585370 DICER1Q9UPY3 1922 aaKnown RBP12.62□□□□□ -0.39
LIG3-203ENST00000585370 GPTP24298 496 aa12.62□□□□□ -0.39
LIG3-203ENST00000585370 CHMLP26374 656 aa12.62□□□□□ -0.39
LIG3-203ENST00000585370 TNNI3KQ59H18 835 aa12.62□□□□□ -0.39
LIG3-203ENST00000585370 TAF7LQ5H9L4 462 aa12.62□□□□□ -0.39
LIG3-203ENST00000585370 KLHDC4Q8TBB5 520 aa12.62□□□□□ -0.39
LIG3-203ENST00000585370 CEP126Q9P2H0 1117 aa12.62□□□□□ -0.39
LIG3-203ENST00000585370 FPGT-TNNI3KV9GXZ4 949 aa12.62□□□□□ -0.39
LIG3-203ENST00000585370 ANKRD18BA2A2Z9 1011 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 FAM177BA6PVY3 158 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 DDNO94850 711 aaPredicted RBP12.61□□□□□ -0.39
LIG3-203ENST00000585370 NPR1P16066 1061 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 ATP5JP18859 108 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 CTSWP56202 376 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 TFCP2Q12800 502 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 RTL5Q5HYW3 569 aaPredicted RBP12.61□□□□□ -0.39
LIG3-203ENST00000585370 SOGA3Q5TF21 947 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 OLFM4Q6UX06 510 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 ATG9AQ7Z3C6 839 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 TTLL11Q8NHH1 800 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 ESYT1Q9BSJ8 1104 aa12.61□□□□□ -0.39
LIG3-203ENST00000585370 NUP98P52948 1817 aa12.6□□□□□ -0.39
LIG3-203ENST00000585370 CACNA1SQ13698 1873 aa12.6□□□□□ -0.39
LIG3-203ENST00000585370 MCCP23508 829 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms