RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	ADCK5	Q3MIX3	580 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	CCDC181	Q5TID7	509 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	ZNF280D	Q6N043	979 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	SDR16C5	Q8N3Y7	309 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	KIF1BP	Q96EK5	621 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	LSG1	Q9H089	658 aa	Known RBP	13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	HYPK	Q9NX55	129 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	SGSM2	O43147	1006 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	CAST	P20810	708 aa	Known RBP	13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	UTP14C	Q5TAP6	766 aa	Known RBP	13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	SPC24	Q8NBT2	197 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	EDC3	Q96F86	508 aa	Known RBP	13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	TMOD3	Q9NYL9	352 aa		13.73	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	VPS37C	A5D8V6	355 aa	Predicted RBP	13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	DDX58	O95786	925 aa	Known RBP	13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	A1BG	P04217	495 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	PAX3	P23760	479 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	HSPA4	P34932	840 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	KSR2	Q6VAB6	950 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	KRBA2	Q6ZNG9	492 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	ANKRD13A	Q8IZ07	590 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	TAF6L	Q9Y6J9	622 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	CRYBG1	Q9Y4K1	1723 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	CUL4A	Q13619	759 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	MYD88	Q99836	296 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	ASAP1	Q9ULH1	1129 aa		13.72	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	EXOC5	O00471	708 aa		13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	MBD3	O95983	291 aa		13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	MKRN3	Q13064	507 aa	Known RBP	13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	PDIA6	Q15084	440 aa		13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	RUFY3	Q7L099	469 aa		13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	FAM227B	Q96M60	508 aa		13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	BICC1	Q9H694	974 aa	Known RBP	13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	NCAPD2	Q15021	1401 aa		13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	EPB41L2	O43491	1005 aa	Known RBP	13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	DNM1	Q05193	864 aa	Known RBP	13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	EPHA10	Q5JZY3	1008 aa		13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	PRPF40B	Q6NWY9	871 aa	Known RBP	13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	AACS	Q86V21	672 aa		13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	ACSBG1	Q96GR2	724 aa		13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	C8orf37	Q96NL8	207 aa		13.71	□□□□□ -0.21
CDK5RAP3-231	ENST00000584063	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.71	□□□□□ -0.21	2e-6	■■■■□ 19.4
CDK5RAP3-231	ENST00000584063	NHSL1	Q5SYE7	1610 aa		13.71	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	PPFIA3	O75145	1194 aa		13.71	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	SYT1	P21579	422 aa		13.71	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	CAMK4	Q16566	473 aa		13.71	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	NBPF10	Q6P3W6	841 aa	Known RBP	13.71	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	CCDC39	Q9UFE4	941 aa		13.71	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	RAD50	Q92878	1312 aa		13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	RAB11FIP3	O75154	756 aa		13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	SASH1	O94885	1247 aa		13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	ADCY5	O95622	1261 aa		13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	NEXN	Q0ZGT2	675 aa		13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	ANKRD13D	Q6ZTN6	518 aa		13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	SPATA32	Q96LK8	384 aa		13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	TRAIP	Q9BWF2	469 aa		13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	PXDNL	A1KZ92	1463 aa		13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	EAF2	Q96CJ1	260 aa	Predicted RBP	13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	ZBTB3	Q9H5J0	574 aa		13.7	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	RGL2	O15211	777 aa		13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	IGKV5-2	P06315	115 aa		13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	TAF3	Q5VWG9	929 aa		13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	CNTROB	Q8N137	903 aa		13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	NGLY1	Q96IV0	654 aa		13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	JAKMIP1	Q96N16	626 aa	Known RBP	13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	SMC3	Q9UQE7	1217 aa		13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	OVOS2	A0A0G2JMS6	1433 aa		13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	STK3	Q13188	491 aa		13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	BOLA2	Q9H3K6	86 aa		13.69	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	KCNJ4	P48050	445 aa		13.68	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	PIGB	Q92521	554 aa		13.68	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	DIAPH3	Q9NSV4	1193 aa		13.68	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	WDR33	Q9C0J8	1336 aa	Known RBP	13.68	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	STX6	O43752	255 aa		13.68	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	SLC24A3	Q9HC58	644 aa		13.68	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	IFIT2	P09913	472 aa	Known RBP	13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	GJB2	P29033	226 aa		13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	MCM2	P49736	904 aa		13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	CLASRP	Q8N2M8	674 aa	Known RBP	13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	TTC14	Q96N46	770 aa		13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	KDM3B	Q7LBC6	1761 aa		13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	ABCA3	Q99758	1704 aa		13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	ERVV-2	B6SEH9	535 aa		13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	AP5Z1	O43299	807 aa		13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	SSR1	P43307	286 aa	Known RBP	13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	ST3GAL1	Q11201	340 aa		13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	MTA1	Q13330	715 aa		13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	TTLL7	Q6ZT98	887 aa		13.67	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	ANKRD62	A6NC57	917 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	GRM8	O00222	908 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	ZSCAN22	P10073	491 aa	Predicted RBP	13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	DMTN	Q08495	405 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	SLFNL1	Q499Z3	407 aa		13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	SYAP1	Q96A49	352 aa	Predicted RBP	13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	TFIP11	Q9UBB9	837 aa	Known RBP	13.66	□□□□□ -0.22
CDK5RAP3-231	ENST00000584063	PHLPP1	O60346	1717 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms