RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 HDGFL1Q5TGJ6 251 aa28.44■■■□□ 2.14
SHMT1-210ENST00000583780 C2orf69Q8N8R5 385 aa28.44■■■□□ 2.14
SHMT1-210ENST00000583780 DCPSQ96C86 337 aaKnown RBP28.44■■■□□ 2.14
SHMT1-210ENST00000583780 CFAP44Q96MT7 982 aa28.44■■■□□ 2.14
SHMT1-210ENST00000583780 DBF4Q9UBU7 674 aaPredicted RBP28.44■■■□□ 2.14
SHMT1-210ENST00000583780 TNRC18O15417 2968 aaPredicted RBP28.44■■■□□ 2.14
SHMT1-210ENST00000583780 VIL1P09327 827 aaKnown RBP28.43■■■□□ 2.14
SHMT1-210ENST00000583780 RALBP1Q15311 655 aa28.43■■■□□ 2.14
SHMT1-210ENST00000583780 CCDC102AQ96A19 550 aa28.43■■■□□ 2.14
SHMT1-210ENST00000583780 AKAP11Q9UKA4 1901 aa28.43■■■□□ 2.14
SHMT1-210ENST00000583780 IRS4O14654 1257 aaPredicted RBP28.42■■■□□ 2.14
SHMT1-210ENST00000583780 HOXB7P09629 217 aa28.42■■■□□ 2.14
SHMT1-210ENST00000583780 EYA3Q99504 573 aa28.42■■■□□ 2.14
SHMT1-210ENST00000583780 RNF186Q9NXI6 227 aa28.41■■■□□ 2.14
SHMT1-210ENST00000583780 PODXL2Q9NZ53 605 aa28.41■■■□□ 2.14
SHMT1-210ENST00000583780 ASTN2O75129 1339 aaPredicted RBP28.41■■■□□ 2.14
SHMT1-210ENST00000583780 ZNF157P51786 506 aaPredicted RBP28.4■■■□□ 2.14
SHMT1-210ENST00000583780 SEC31BQ9NQW1 1179 aa28.4■■■□□ 2.14
SHMT1-210ENST00000583780 SAGE1Q9NXZ1 904 aa28.4■■■□□ 2.14
SHMT1-210ENST00000583780 KIF4BQ2VIQ3 1234 aa28.39■■■□□ 2.14
SHMT1-210ENST00000583780 CSRNP1Q96S65 589 aa28.39■■■□□ 2.14
SHMT1-210ENST00000583780 ZC3H12CQ9C0D7 883 aaKnown RBP28.39■■■□□ 2.14
SHMT1-210ENST00000583780 HYPKQ9NX55 129 aa28.39■■■□□ 2.14
SHMT1-210ENST00000583780 TRPA1O75762 1119 aa28.38■■■□□ 2.13
SHMT1-210ENST00000583780 RUNDC1Q96C34 613 aa28.38■■■□□ 2.13
SHMT1-210ENST00000583780 PDE4DIPQ5VU43 2346 aa28.38■■■□□ 2.13
SHMT1-210ENST00000583780 DUSP27Q5VZP5 1158 aa28.37■■■□□ 2.13
SHMT1-210ENST00000583780 SLC10A3P09131 477 aa28.36■■■□□ 2.13
SHMT1-210ENST00000583780 ZBTB38Q8NAP3 1195 aaPredicted RBP28.36■■■□□ 2.13
SHMT1-210ENST00000583780 GGA3Q9NZ52 723 aa28.36■■■□□ 2.13
SHMT1-210ENST00000583780 ZNF280AP59817 542 aaPredicted RBP28.35■■■□□ 2.13
SHMT1-210ENST00000583780 SULF1Q8IWU6 871 aa28.35■■■□□ 2.13
SHMT1-210ENST00000583780 CDCA5Q96FF9 252 aa28.34■■■□□ 2.13
SHMT1-210ENST00000583780 PHAXQ9H814 394 aaKnown RBP28.34■■■□□ 2.13
SHMT1-210ENST00000583780 PSME4Q14997 1843 aa28.34■■■□□ 2.13
SHMT1-210ENST00000583780 SCARF1Q14162 830 aa28.33■■■□□ 2.13
SHMT1-210ENST00000583780 GMLQ99445 158 aa28.33■■■□□ 2.13
SHMT1-210ENST00000583780 UFL1O94874 794 aa28.32■■■□□ 2.12
SHMT1-210ENST00000583780 RSBN1LQ6PCB5 846 aaPredicted RBP28.32■■■□□ 2.12
SHMT1-210ENST00000583780 RIC3Q7Z5B4 369 aa28.32■■■□□ 2.12
SHMT1-210ENST00000583780 AGBL3Q8NEM8 1001 aa28.32■■■□□ 2.12
SHMT1-210ENST00000583780 MBIPQ9NS73 344 aa28.32■■■□□ 2.12
SHMT1-210ENST00000583780 ADAMTS8Q9UP79 889 aa28.32■■■□□ 2.12
SHMT1-210ENST00000583780 ZNF853P0CG23 659 aa28.31■■■□□ 2.12
SHMT1-210ENST00000583780 ANGEL2Q5VTE6 544 aaKnown RBP28.31■■■□□ 2.12
SHMT1-210ENST00000583780 ANKIB1Q9P2G1 1089 aa28.31■■■□□ 2.12
SHMT1-210ENST00000583780 GGA1Q9UJY5 639 aa28.31■■■□□ 2.12
SHMT1-210ENST00000583780 ZNF609O15014 1411 aa28.3■■■□□ 2.12
SHMT1-210ENST00000583780 JARID2Q92833 1246 aaPredicted RBP28.3■■■□□ 2.12
SHMT1-210ENST00000583780 RASAL3Q86YV0 1011 aa28.29■■■□□ 2.12
SHMT1-210ENST00000583780 MYBBP1AQ9BQG0 1328 aaKnown RBP28.28■■■□□ 2.12
SHMT1-210ENST00000583780 WTIPA6NIX2 430 aaPredicted RBP28.28■■■□□ 2.12
SHMT1-210ENST00000583780 G3V3G9 751 aa28.28■■■□□ 2.12
SHMT1-210ENST00000583780 PCCAP05165 728 aaPredicted RBP28.28■■■□□ 2.12
SHMT1-210ENST00000583780 DCAF8Q5TAQ9 597 aa28.28■■■□□ 2.12
SHMT1-210ENST00000583780 MYD88Q99836 296 aa28.28■■■□□ 2.12
SHMT1-210ENST00000583780 PDE8AO60658 829 aa28.27■■■□□ 2.12
SHMT1-210ENST00000583780 CCDC191Q8NCU4 936 aa28.27■■■□□ 2.12
SHMT1-210ENST00000583780 SOX10P56693 466 aa28.26■■■□□ 2.11
SHMT1-210ENST00000583780 CCDC152Q4G0S7 254 aa28.26■■■□□ 2.11
SHMT1-210ENST00000583780 REM2Q8IYK8 340 aaPredicted RBP28.26■■■□□ 2.11
SHMT1-210ENST00000583780 CCDC85AQ96PX6 553 aaPredicted RBP28.26■■■□□ 2.11
SHMT1-210ENST00000583780 MYOZ2Q9NPC6 264 aa28.26■■■□□ 2.11
SHMT1-210ENST00000583780 USP17L8P0C7I0 530 aa28.25■■■□□ 2.11
SHMT1-210ENST00000583780 GOLGA2Q08379 1002 aa28.25■■■□□ 2.11
SHMT1-210ENST00000583780 MOB2Q70IA6 237 aa28.25■■■□□ 2.11
SHMT1-210ENST00000583780 SCAF8Q9UPN6 1271 aaKnown RBP28.25■■■□□ 2.11
SHMT1-210ENST00000583780 ELL2O00472 640 aaPredicted RBP28.24■■■□□ 2.11
SHMT1-210ENST00000583780 HSP90B1P14625 803 aaKnown RBP28.24■■■□□ 2.11
SHMT1-210ENST00000583780 FKBP1BP68106 108 aa28.24■■■□□ 2.11
SHMT1-210ENST00000583780 CTU1Q7Z7A3 348 aaKnown RBP28.24■■■□□ 2.11
SHMT1-210ENST00000583780 PITPNM2Q9BZ72 1349 aa28.23■■■□□ 2.11
SHMT1-210ENST00000583780 WDR43Q15061 677 aaKnown RBP eCLIP28.23■■■□□ 2.11
SHMT1-210ENST00000583780 PODNQ7Z5L7 613 aa28.23■■■□□ 2.11
SHMT1-210ENST00000583780 XDHP47989 1333 aa28.22■■■□□ 2.11
SHMT1-210ENST00000583780 USP17L3A6NCW0 530 aa28.22■■■□□ 2.11
SHMT1-210ENST00000583780 USP17L4A6NCW7 530 aa28.22■■■□□ 2.11
SHMT1-210ENST00000583780 ATP2B4P23634 1241 aa28.22■■■□□ 2.11
SHMT1-210ENST00000583780 USP17L1Q7RTZ2 530 aa28.22■■■□□ 2.11
SHMT1-210ENST00000583780 METTL22Q9BUU2 404 aaPredicted RBP28.22■■■□□ 2.11
SHMT1-210ENST00000583780 PAPPA2Q9BXP8 1791 aa28.22■■■□□ 2.11
SHMT1-210ENST00000583780 DDX10Q13206 875 aaKnown RBP28.21■■■□□ 2.11
SHMT1-210ENST00000583780 PRAMEF18Q5VWM3 479 aa28.21■■■□□ 2.11
SHMT1-210ENST00000583780 ANKRD18AQ8IVF6 992 aa28.21■■■□□ 2.11
SHMT1-210ENST00000583780 CWC25Q9NXE8 425 aaPredicted RBP28.21■■■□□ 2.11
SHMT1-210ENST00000583780 PCDH10Q9P2E7 1040 aa28.21■■■□□ 2.11
SHMT1-210ENST00000583780 UBE2Q2LH0YL09 131 aa28.2■■■□□ 2.1
SHMT1-210ENST00000583780 NBPF9Q3BBW0 867 aa28.2■■■□□ 2.1
SHMT1-210ENST00000583780 C8orf58Q8NAV2 365 aa28.2■■■□□ 2.1
SHMT1-210ENST00000583780 ZNF646O15015 1829 aaPredicted RBP28.19■■■□□ 2.1
SHMT1-210ENST00000583780 MXD3Q9BW11 206 aa28.18■■■□□ 2.1
SHMT1-210ENST00000583780 IFT57Q9NWB7 429 aa28.18■■■□□ 2.1
SHMT1-210ENST00000583780 TTLL11Q8NHH1 800 aa28.17■■■□□ 2.1
SHMT1-210ENST00000583780 MINPP1Q9UNW1 487 aa28.17■■■□□ 2.1
SHMT1-210ENST00000583780 TBC1D8O95759 1140 aa28.16■■■□□ 2.1
SHMT1-210ENST00000583780 TM4SF4P48230 202 aa28.16■■■□□ 2.1
SHMT1-210ENST00000583780 GNAI1P63096 354 aa28.16■■■□□ 2.1
SHMT1-210ENST00000583780 DACT2Q5SW24 774 aa28.16■■■□□ 2.1
SHMT1-210ENST00000583780 HPS5Q9UPZ3 1129 aa28.16■■■□□ 2.1
SHMT1-210ENST00000583780 APAF1O14727 1248 aa28.15■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms