RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 RTL9Q8NET4 1388 aa16.72■□□□□ 0.27
SS18-219ENST00000581570 SF3B3Q15393 1217 aaKnown RBP16.71■□□□□ 0.27
SS18-219ENST00000581570 CDCA5Q96FF9 252 aa16.71■□□□□ 0.27
SS18-219ENST00000581570 HPS5Q9UPZ3 1129 aa16.71■□□□□ 0.27
SS18-219ENST00000581570 ASTN2O75129 1339 aaPredicted RBP16.7■□□□□ 0.26
SS18-219ENST00000581570 ANKRD36CQ5JPF3 1778 aa16.7■□□□□ 0.26
SS18-219ENST00000581570 VIL1P09327 827 aaKnown RBP16.7■□□□□ 0.26
SS18-219ENST00000581570 RASAL3Q86YV0 1011 aa16.7■□□□□ 0.26
SS18-219ENST00000581570 FAM89AQ96GI7 184 aa16.7■□□□□ 0.26
SS18-219ENST00000581570 ZC3H12CQ9C0D7 883 aaKnown RBP16.7■□□□□ 0.26
SS18-219ENST00000581570 DLG5Q8TDM6 1919 aa16.7■□□□□ 0.26
SS18-219ENST00000581570 G3V3G9 751 aa16.69■□□□□ 0.26
SS18-219ENST00000581570 RIPK4P57078 832 aa16.69■□□□□ 0.26
SS18-219ENST00000581570 PKN2Q16513 984 aaKnown RBP16.69■□□□□ 0.26
SS18-219ENST00000581570 DCAF8Q5TAQ9 597 aa16.69■□□□□ 0.26
SS18-219ENST00000581570 TBC1D16Q8TBP0 767 aa16.69■□□□□ 0.26
SS18-219ENST00000581570 HDAC9Q9UKV0 1011 aa16.69■□□□□ 0.26
SS18-219ENST00000581570 LAMB2P55268 1798 aa16.69■□□□□ 0.26
SS18-219ENST00000581570 SCARF1Q14162 830 aa16.68■□□□□ 0.26
SS18-219ENST00000581570 ANGEL2Q5VTE6 544 aaKnown RBP16.68■□□□□ 0.26
SS18-219ENST00000581570 PDE4DIPQ5VU43 2346 aa16.67■□□□□ 0.26
SS18-219ENST00000581570 RPS8P62241 208 aaKnown RBP16.67■□□□□ 0.26
SS18-219ENST00000581570 FKBP1BP68106 108 aa16.67■□□□□ 0.26
SS18-219ENST00000581570 PLBD2Q8NHP8 589 aa16.67■□□□□ 0.26
SS18-219ENST00000581570 ISCA1Q9BUE6 129 aa16.67■□□□□ 0.26
SS18-219ENST00000581570 ATP5J2-PTCD1G3V325 749 aa16.66■□□□□ 0.26
SS18-219ENST00000581570 ZNF280AP59817 542 aaPredicted RBP16.66■□□□□ 0.26
SS18-219ENST00000581570 RTL5Q5HYW3 569 aaPredicted RBP16.66■□□□□ 0.26
SS18-219ENST00000581570 ANKRD13DQ6ZTN6 518 aa16.66■□□□□ 0.26
SS18-219ENST00000581570 AGBL3Q8NEM8 1001 aa16.66■□□□□ 0.26
SS18-219ENST00000581570 TAF1P21675 1872 aa16.65■□□□□ 0.26
SS18-219ENST00000581570 LRRC37AA6NMS7 1700 aa16.65■□□□□ 0.26
SS18-219ENST00000581570 TBC1D8O95759 1140 aa16.65■□□□□ 0.26
SS18-219ENST00000581570 RSBN1LQ6PCB5 846 aaPredicted RBP16.65■□□□□ 0.26
SS18-219ENST00000581570 ZNF296Q8WUU4 475 aaPredicted RBP16.65■□□□□ 0.26
SS18-219ENST00000581570 PODXL2Q9NZ53 605 aa16.65■□□□□ 0.26
SS18-219ENST00000581570 CHPF2Q9P2E5 772 aa16.65■□□□□ 0.26
SS18-219ENST00000581570 POLR2AP24928 1970 aaKnown RBP16.65■□□□□ 0.26
SS18-219ENST00000581570 IRS4O14654 1257 aaPredicted RBP16.64■□□□□ 0.25
SS18-219ENST00000581570 UFL1O94874 794 aa16.64■□□□□ 0.25
SS18-219ENST00000581570 LMOD3Q0VAK6 560 aa16.64■□□□□ 0.25
SS18-219ENST00000581570 KRT24Q2M2I5 525 aa16.64■□□□□ 0.25
SS18-219ENST00000581570 ANKIB1Q9P2G1 1089 aa16.64■□□□□ 0.25
SS18-219ENST00000581570 GGA1Q9UJY5 639 aa16.64■□□□□ 0.25
SS18-219ENST00000581570 AKAP11Q9UKA4 1901 aa16.63■□□□□ 0.25
SS18-219ENST00000581570 UBE2Q2LH0YL09 131 aa16.63■□□□□ 0.25
SS18-219ENST00000581570 MOB2Q70IA6 237 aa16.63■□□□□ 0.25
SS18-219ENST00000581570 MYOZ2Q9NPC6 264 aa16.63■□□□□ 0.25
SS18-219ENST00000581570 USP17L8P0C7I0 530 aa16.62■□□□□ 0.25
SS18-219ENST00000581570 TMPOP42166 694 aaKnown RBP16.62■□□□□ 0.25
SS18-219ENST00000581570 HDGFL1Q5TGJ6 251 aa16.62■□□□□ 0.25
SS18-219ENST00000581570 SEC31BQ9NQW1 1179 aa16.62■□□□□ 0.25
SS18-219ENST00000581570 PITPNM2Q9BZ72 1349 aa16.62■□□□□ 0.25
SS18-219ENST00000581570 GPR25O00155 361 aa16.61■□□□□ 0.25
SS18-219ENST00000581570 CHL1O00533 1208 aa16.61■□□□□ 0.25
SS18-219ENST00000581570 TM4SF4P48230 202 aa16.61■□□□□ 0.25
SS18-219ENST00000581570 TRIM28Q13263 835 aaKnown RBP16.61■□□□□ 0.25
SS18-219ENST00000581570 FBXO46Q6PJ61 603 aaPredicted RBP16.61■□□□□ 0.25
SS18-219ENST00000581570 GMLQ99445 158 aa16.61■□□□□ 0.25
SS18-219ENST00000581570 DBF4Q9UBU7 674 aaPredicted RBP16.61■□□□□ 0.25
SS18-219ENST00000581570 SCAF8Q9UPN6 1271 aaKnown RBP16.61■□□□□ 0.25
SS18-219ENST00000581570 LAS1LQ9Y4W2 734 aaKnown RBP16.61■□□□□ 0.25
SS18-219ENST00000581570 COL4A1P02462 1669 aa16.6■□□□□ 0.25
SS18-219ENST00000581570 TTLL12Q14166 644 aaPredicted RBP16.6■□□□□ 0.25
SS18-219ENST00000581570 NOM1Q5C9Z4 860 aaKnown RBP16.6■□□□□ 0.25
SS18-219ENST00000581570 PRAMEF18Q5VWM3 479 aa16.6■□□□□ 0.25
SS18-219ENST00000581570 GCC1Q96CN9 775 aa16.6■□□□□ 0.25
SS18-219ENST00000581570 ZNF609O15014 1411 aa16.6■□□□□ 0.25
SS18-219ENST00000581570 DDX60Q8IY21 1712 aaKnown RBP16.59■□□□□ 0.25
SS18-219ENST00000581570 USP17L3A6NCW0 530 aa16.59■□□□□ 0.25
SS18-219ENST00000581570 USP17L4A6NCW7 530 aa16.59■□□□□ 0.25
SS18-219ENST00000581570 HSP90B1P14625 803 aaKnown RBP16.59■□□□□ 0.25
SS18-219ENST00000581570 NEUROD2Q15784 382 aa16.59■□□□□ 0.25
SS18-219ENST00000581570 USP17L1Q7RTZ2 530 aa16.59■□□□□ 0.25
SS18-219ENST00000581570 ZBTB38Q8NAP3 1195 aaPredicted RBP16.59■□□□□ 0.25
SS18-219ENST00000581570 PAPPA2Q9BXP8 1791 aa16.59■□□□□ 0.25
SS18-219ENST00000581570 HOXB7P09629 217 aa16.58■□□□□ 0.24
SS18-219ENST00000581570 MKRN3Q13064 507 aaKnown RBP16.58■□□□□ 0.24
SS18-219ENST00000581570 PODNQ7Z5L7 613 aa16.58■□□□□ 0.24
SS18-219ENST00000581570 HYPKQ9NX55 129 aa16.58■□□□□ 0.24
SS18-219ENST00000581570 SCN9AQ15858 1988 aa16.57■□□□□ 0.24
SS18-219ENST00000581570 FKTNO75072 461 aa16.57■□□□□ 0.24
SS18-219ENST00000581570 ATP2B4P23634 1241 aa16.57■□□□□ 0.24
SS18-219ENST00000581570 NF2P35240 595 aa16.57■□□□□ 0.24
SS18-219ENST00000581570 SREBF2Q12772 1141 aa16.57■□□□□ 0.24
SS18-219ENST00000581570 NBPF9Q3BBW0 867 aa16.57■□□□□ 0.24
SS18-219ENST00000581570 CCDC152Q4G0S7 254 aa16.57■□□□□ 0.24
SS18-219ENST00000581570 RIC3Q7Z5B4 369 aa16.57■□□□□ 0.24
SS18-219ENST00000581570 XDHP47989 1333 aa16.56■□□□□ 0.24
SS18-219ENST00000581570 CCDC85AQ96PX6 553 aaPredicted RBP16.56■□□□□ 0.24
SS18-219ENST00000581570 PDE8AO60658 829 aa16.55■□□□□ 0.24
SS18-219ENST00000581570 ANKRD18AQ8IVF6 992 aa16.55■□□□□ 0.24
SS18-219ENST00000581570 CFHR5Q9BXR6 569 aa16.55■□□□□ 0.24
SS18-219ENST00000581570 R3HDMLQ9H3Y0 253 aa16.55■□□□□ 0.24
SS18-219ENST00000581570 PTPN12Q05209 780 aaKnown RBP16.54■□□□□ 0.24
SS18-219ENST00000581570 GOLGA2Q08379 1002 aa16.54■□□□□ 0.24
SS18-219ENST00000581570 DUSP27Q5VZP5 1158 aa16.54■□□□□ 0.24
SS18-219ENST00000581570 ARMC9Q7Z3E5 817 aa16.54■□□□□ 0.24
SS18-219ENST00000581570 OGFOD1Q8N543 542 aa16.54■□□□□ 0.24
SS18-219ENST00000581570 MYD88Q99836 296 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms