RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TXNRD1Q16881 649 aa12.84□□□□□ -0.35
SS18-217ENST00000580958 ERFEQ4G0M1 354 aa12.84□□□□□ -0.35
SS18-217ENST00000580958 DDRGK1Q96HY6 314 aa12.84□□□□□ -0.35
SS18-217ENST00000580958 DBNDD2Q9BQY9 259 aa12.84□□□□□ -0.35
SS18-217ENST00000580958 GPR108Q9NPR9 543 aa12.84□□□□□ -0.35
SS18-217ENST00000580958 DBNLQ9UJU6 430 aaKnown RBP12.84□□□□□ -0.35
SS18-217ENST00000580958 FBXO3Q9UK99 471 aa12.84□□□□□ -0.35
SS18-217ENST00000580958 MYH7P12883 1935 aa12.84□□□□□ -0.35
SS18-217ENST00000580958 EIF5BO60841 1220 aaKnown RBP12.83□□□□□ -0.36
SS18-217ENST00000580958 APBA3O96018 575 aa12.83□□□□□ -0.36
SS18-217ENST00000580958 HSP90B1P14625 803 aaKnown RBP12.83□□□□□ -0.36
SS18-217ENST00000580958 CHMLP26374 656 aa12.83□□□□□ -0.36
SS18-217ENST00000580958 CNTROBQ8N137 903 aa12.83□□□□□ -0.36
SS18-217ENST00000580958 SETDB2Q96T68 719 aa12.83□□□□□ -0.36
SS18-217ENST00000580958 CEP126Q9P2H0 1117 aa12.83□□□□□ -0.36
SS18-217ENST00000580958 COL4A1P02462 1669 aa12.83□□□□□ -0.36
SS18-217ENST00000580958 TNRC6CQ9HCJ0 1690 aaKnown RBP12.83□□□□□ -0.36
SS18-217ENST00000580958 ABCC12Q96J65 1359 aa12.82□□□□□ -0.36
SS18-217ENST00000580958 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.82□□□□□ -0.36
SS18-217ENST00000580958 CCDC152Q4G0S7 254 aa12.82□□□□□ -0.36
SS18-217ENST00000580958 PROM2Q8N271 834 aa12.82□□□□□ -0.36
SS18-217ENST00000580958 NEUROD6Q96NK8 337 aa12.82□□□□□ -0.36
SS18-217ENST00000580958 NYXQ9GZU5 481 aa12.82□□□□□ -0.36
SS18-217ENST00000580958 CNNM1Q9NRU3 951 aa12.82□□□□□ -0.36
SS18-217ENST00000580958 AKAP11Q9UKA4 1901 aa12.82□□□□□ -0.36
SS18-217ENST00000580958 RTL9Q8NET4 1388 aa12.81□□□□□ -0.36
SS18-217ENST00000580958 MYO5AQ9Y4I1 1855 aaKnown RBP12.81□□□□□ -0.36
SS18-217ENST00000580958 EP400Q96L91 3159 aa12.81□□□□□ -0.36
SS18-217ENST00000580958 PLSCR1O15162 318 aa12.81□□□□□ -0.36
SS18-217ENST00000580958 METTL24Q5JXM2 366 aa12.81□□□□□ -0.36
SS18-217ENST00000580958 LDHAL6AQ6ZMR3 332 aa12.81□□□□□ -0.36
SS18-217ENST00000580958 NBPF5PQ86XG9 351 aaPredicted RBP12.81□□□□□ -0.36
SS18-217ENST00000580958 ESYT1Q9BSJ8 1104 aa12.81□□□□□ -0.36
SS18-217ENST00000580958 BOLA2Q9H3K6 86 aa12.81□□□□□ -0.36
SS18-217ENST00000580958 SEC31BQ9NQW1 1179 aa12.81□□□□□ -0.36
SS18-217ENST00000580958 RIPOR2Q9Y4F9 1068 aa12.81□□□□□ -0.36
SS18-217ENST00000580958 A0A1B0GUL7 405 aa12.8□□□□□ -0.36
SS18-217ENST00000580958 ATP5JP18859 108 aa12.8□□□□□ -0.36
SS18-217ENST00000580958 SSFA2P28290 1259 aa12.8□□□□□ -0.36
SS18-217ENST00000580958 GTF2E1P29083 439 aaPredicted RBP12.8□□□□□ -0.36
SS18-217ENST00000580958 RBM25P49756 843 aaKnown RBP12.8□□□□□ -0.36
SS18-217ENST00000580958 TIMM10P62072 90 aa12.8□□□□□ -0.36
SS18-217ENST00000580958 SLC10A5Q5PT55 438 aa12.8□□□□□ -0.36
SS18-217ENST00000580958 C3orf67Q6ZVT6 689 aa12.8□□□□□ -0.36
SS18-217ENST00000580958 HMGB2P26583 209 aaKnown RBP12.79□□□□□ -0.36
SS18-217ENST00000580958 ADORA1P30542 326 aa12.79□□□□□ -0.36
SS18-217ENST00000580958 EVI5LQ96CN4 794 aa12.79□□□□□ -0.36
SS18-217ENST00000580958 USP26Q9BXU7 913 aa12.79□□□□□ -0.36
SS18-217ENST00000580958 AKAP2Q9Y2D5 859 aa12.79□□□□□ -0.36
SS18-217ENST00000580958 REC8O95072 547 aa12.78□□□□□ -0.36
SS18-217ENST00000580958 NFIXQ14938 502 aa12.78□□□□□ -0.36
SS18-217ENST00000580958 SF3B3Q15393 1217 aaKnown RBP12.78□□□□□ -0.36
SS18-217ENST00000580958 ATP2B3Q16720 1220 aa12.78□□□□□ -0.36
SS18-217ENST00000580958 ZNF827Q17R98 1081 aa12.78□□□□□ -0.36
SS18-217ENST00000580958 CCDC24Q8N4L8 307 aa12.78□□□□□ -0.36
SS18-217ENST00000580958 VGLL2Q8N8G2 317 aa12.78□□□□□ -0.36
SS18-217ENST00000580958 CARMIL3Q8ND23 1372 aa12.78□□□□□ -0.36
SS18-217ENST00000580958 QSER1Q2KHR3 1735 aa12.77□□□□□ -0.36
SS18-217ENST00000580958 GYS1P13807 737 aa12.77□□□□□ -0.37
SS18-217ENST00000580958 IGHMBP2P38935 993 aaKnown RBP12.77□□□□□ -0.37
SS18-217ENST00000580958 TPTE2Q6XPS3 522 aa12.77□□□□□ -0.37
SS18-217ENST00000580958 EDC3Q96F86 508 aaKnown RBP12.77□□□□□ -0.37
SS18-217ENST00000580958 XAGE2Q96GT9 111 aa12.77□□□□□ -0.37
SS18-217ENST00000580958 DNAJC2Q99543 621 aaKnown RBP12.77□□□□□ -0.37
SS18-217ENST00000580958 MPHOSPH8Q99549 860 aa12.77□□□□□ -0.37
SS18-217ENST00000580958 HAUS7Q99871 368 aa12.77□□□□□ -0.37
SS18-217ENST00000580958 MYH13Q9UKX3 1938 aa12.77□□□□□ -0.37
SS18-217ENST00000580958 MROH5Q6ZUA9 1318 aa12.77□□□□□ -0.37
SS18-217ENST00000580958 ANKRD31Q8N7Z5 1873 aa12.76□□□□□ -0.37
SS18-217ENST00000580958 GORABQ5T7V8 394 aa12.76□□□□□ -0.37
SS18-217ENST00000580958 HELBQ8NG08 1087 aaPredicted RBP12.76□□□□□ -0.37
SS18-217ENST00000580958 CDC5LQ99459 802 aaKnown RBP12.76□□□□□ -0.37
SS18-217ENST00000580958 FSD1Q9BTV5 496 aa12.76□□□□□ -0.37
SS18-217ENST00000580958 IL25Q9H293 177 aa12.76□□□□□ -0.37
SS18-217ENST00000580958 DIAPH3Q9NSV4 1193 aa12.76□□□□□ -0.37
SS18-217ENST00000580958 NDUFB9Q9Y6M9 179 aa12.76□□□□□ -0.37
SS18-217ENST00000580958 NPHP1O15259 732 aa12.75□□□□□ -0.37
SS18-217ENST00000580958 SGSM2O43147 1006 aa12.75□□□□□ -0.37
SS18-217ENST00000580958 PDE8BO95263 885 aa12.75□□□□□ -0.37
SS18-217ENST00000580958 IFIT1P09914 478 aaKnown RBP12.75□□□□□ -0.37
SS18-217ENST00000580958 SLC4A3P48751 1232 aa12.75□□□□□ -0.37
SS18-217ENST00000580958 TTC39AQ5SRH9 613 aa12.75□□□□□ -0.37
SS18-217ENST00000580958 CWC27Q6UX04 472 aaKnown RBP12.75□□□□□ -0.37
SS18-217ENST00000580958 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.75□□□□□ -0.37
SS18-217ENST00000580958 NLRP3Q96P20 1036 aa12.75□□□□□ -0.37
SS18-217ENST00000580958 KIF2CQ99661 725 aa12.75□□□□□ -0.37
SS18-217ENST00000580958 ANO2Q9NQ90 1003 aa12.75□□□□□ -0.37
SS18-217ENST00000580958 TFCP2L1Q9NZI6 479 aa12.75□□□□□ -0.37
SS18-217ENST00000580958 NRXN2Q9P2S2 1712 aa12.74□□□□□ -0.37
SS18-217ENST00000580958 HIP1O00291 1037 aa12.74□□□□□ -0.37
SS18-217ENST00000580958 TM4SF1P30408 202 aa12.74□□□□□ -0.37
SS18-217ENST00000580958 NMIQ13287 307 aaPredicted RBP12.74□□□□□ -0.37
SS18-217ENST00000580958 BECN1Q14457 450 aa12.74□□□□□ -0.37
SS18-217ENST00000580958 PUM3Q15397 648 aaKnown RBP12.74□□□□□ -0.37
SS18-217ENST00000580958 CCDC158Q5M9N0 1113 aa12.74□□□□□ -0.37
SS18-217ENST00000580958 DDX46Q7L014 1031 aaKnown RBP12.74□□□□□ -0.37
SS18-217ENST00000580958 ANKRD18AQ8IVF6 992 aa12.74□□□□□ -0.37
SS18-217ENST00000580958 CNBD1Q8NA66 436 aa12.74□□□□□ -0.37
SS18-217ENST00000580958 ZNF579Q8NAF0 562 aaKnown RBP12.74□□□□□ -0.37
SS18-217ENST00000580958 RUFY2Q8WXA3 655 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms