RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 LDHAL6AQ6ZMR3 332 aa19.31■□□□□ 0.68
SS18-216ENST00000580751 MPNDQ8N594 471 aa19.31■□□□□ 0.68
SS18-216ENST00000580751 ZNF594Q96JF6 807 aaPredicted RBP19.31■□□□□ 0.68
SS18-216ENST00000580751 PSMD1Q99460 953 aa19.31■□□□□ 0.68
SS18-216ENST00000580751 RFX5P48382 616 aaPredicted RBP19.3■□□□□ 0.68
SS18-216ENST00000580751 CNNM1Q9NRU3 951 aa19.3■□□□□ 0.68
SS18-216ENST00000580751 MINPP1Q9UNW1 487 aa19.3■□□□□ 0.68
SS18-216ENST00000580751 NSFL1CQ9UNZ2 370 aaKnown RBP19.3■□□□□ 0.68
SS18-216ENST00000580751 XDHP47989 1333 aa19.29■□□□□ 0.68
SS18-216ENST00000580751 CEP85Q6P2H3 762 aa19.29■□□□□ 0.68
SS18-216ENST00000580751 SLC51AQ86UW1 340 aa19.29■□□□□ 0.68
SS18-216ENST00000580751 SUPT20HQ8NEM7 779 aa19.29■□□□□ 0.68
SS18-216ENST00000580751 ANKRD2Q9GZV1 360 aa19.29■□□□□ 0.68
SS18-216ENST00000580751 PODXL2Q9NZ53 605 aa19.29■□□□□ 0.68
SS18-216ENST00000580751 ANKIB1Q9P2G1 1089 aa19.29■□□□□ 0.68
SS18-216ENST00000580751 FBXO3Q9UK99 471 aa19.29■□□□□ 0.68
SS18-216ENST00000580751 LTBP1Q14766 1721 aa19.28■□□□□ 0.68
SS18-216ENST00000580751 GPSM2P81274 684 aa19.28■□□□□ 0.68
SS18-216ENST00000580751 ATP8B2P98198 1209 aa19.28■□□□□ 0.68
SS18-216ENST00000580751 RASSF7Q02833 373 aa19.28■□□□□ 0.68
SS18-216ENST00000580751 PTPN12Q05209 780 aaKnown RBP19.28■□□□□ 0.68
SS18-216ENST00000580751 RTFDC1Q9BY42 306 aaPredicted RBP19.28■□□□□ 0.68
SS18-216ENST00000580751 COPRSQ9NQ92 184 aa19.28■□□□□ 0.68
SS18-216ENST00000580751 DUOX1Q9NRD9 1551 aa19.27■□□□□ 0.68
SS18-216ENST00000580751 PNMA6EA0A0J9YXQ4 647 aa19.27■□□□□ 0.68
SS18-216ENST00000580751 LMNB1P20700 586 aa19.27■□□□□ 0.68
SS18-216ENST00000580751 CHRNDQ07001 517 aa19.27■□□□□ 0.68
SS18-216ENST00000580751 RPAP2Q8IXW5 612 aaPredicted RBP19.27■□□□□ 0.68
SS18-216ENST00000580751 KLHDC4Q8TBB5 520 aa19.27■□□□□ 0.68
SS18-216ENST00000580751 MROH5Q6ZUA9 1318 aa19.26■□□□□ 0.67
SS18-216ENST00000580751 EYA2O00167 538 aa19.26■□□□□ 0.67
SS18-216ENST00000580751 CIAO1O76071 339 aa19.26■□□□□ 0.67
SS18-216ENST00000580751 POLA2Q14181 598 aa19.26■□□□□ 0.67
SS18-216ENST00000580751 SSH3Q8TE77 659 aa19.26■□□□□ 0.67
SS18-216ENST00000580751 GGA1Q9UJY5 639 aa19.26■□□□□ 0.67
SS18-216ENST00000580751 A0A1B0GUL6 1792 aa19.25■□□□□ 0.67
SS18-216ENST00000580751 HMMRO75330 724 aa19.25■□□□□ 0.67
SS18-216ENST00000580751 UFL1O94874 794 aa19.25■□□□□ 0.67
SS18-216ENST00000580751 ATP2B4P23634 1241 aa19.25■□□□□ 0.67
SS18-216ENST00000580751 TBC1D16Q8TBP0 767 aa19.25■□□□□ 0.67
SS18-216ENST00000580751 PUS3Q9BZE2 481 aaKnown RBP19.25■□□□□ 0.67
SS18-216ENST00000580751 VPS33BQ9H267 617 aa19.25■□□□□ 0.67
SS18-216ENST00000580751 RIPOR2Q9Y4F9 1068 aa19.25■□□□□ 0.67
SS18-216ENST00000580751 CHD4Q14839 1912 aa19.24■□□□□ 0.67
SS18-216ENST00000580751 C6orf229H3BNL8 230 aa19.24■□□□□ 0.67
SS18-216ENST00000580751 IARSP41252 1262 aaKnown RBP19.24■□□□□ 0.67
SS18-216ENST00000580751 LRRC24Q50LG9 513 aa19.24■□□□□ 0.67
SS18-216ENST00000580751 CCDC136Q96JN2 1154 aa19.24■□□□□ 0.67
SS18-216ENST00000580751 EYA3Q99504 573 aa19.24■□□□□ 0.67
SS18-216ENST00000580751 SIL1Q9H173 461 aa19.24■□□□□ 0.67
SS18-216ENST00000580751 ZNF277Q9NRM2 450 aaPredicted RBP19.24■□□□□ 0.67
SS18-216ENST00000580751 PA2G4Q9UQ80 394 aaKnown RBP19.24■□□□□ 0.67
SS18-216ENST00000580751 LEMD3Q9Y2U8 911 aa19.24■□□□□ 0.67
SS18-216ENST00000580751 SBF1O95248 1867 aa19.24■□□□□ 0.67
SS18-216ENST00000580751 IL15P40933 162 aaPredicted RBP19.23■□□□□ 0.67
SS18-216ENST00000580751 KCNJ4P48050 445 aa19.23■□□□□ 0.67
SS18-216ENST00000580751 METTL24Q5JXM2 366 aa19.23■□□□□ 0.67
SS18-216ENST00000580751 RNF181Q9P0P0 153 aa19.23■□□□□ 0.67
SS18-216ENST00000580751 POLLQ9UGP5 575 aa19.23■□□□□ 0.67
SS18-216ENST00000580751 PPIP5K2O43314 1243 aa19.22■□□□□ 0.67
SS18-216ENST00000580751 C9orf131Q5VYM1 1079 aa19.22■□□□□ 0.67
SS18-216ENST00000580751 ZNF804BA4D1E1 1349 aa19.22■□□□□ 0.67
SS18-216ENST00000580751 MED23Q9ULK4 1368 aa19.21■□□□□ 0.67
SS18-216ENST00000580751 PRELPP51888 382 aa19.21■□□□□ 0.67
SS18-216ENST00000580751 KIAA2012Q0VF49 1180 aa19.21■□□□□ 0.67
SS18-216ENST00000580751 WASHC4Q2M389 1173 aa19.21■□□□□ 0.67
SS18-216ENST00000580751 ATG9AQ7Z3C6 839 aa19.21■□□□□ 0.67
SS18-216ENST00000580751 LARGE2Q8N3Y3 721 aa19.21■□□□□ 0.67
SS18-216ENST00000580751 HELBQ8NG08 1087 aaPredicted RBP19.21■□□□□ 0.67
SS18-216ENST00000580751 DICER1Q9UPY3 1922 aaKnown RBP19.21■□□□□ 0.67
SS18-216ENST00000580751 ZC3H4Q9UPT8 1303 aaKnown RBP19.21■□□□□ 0.67
SS18-216ENST00000580751 CCDC88AQ3V6T2 1871 aa19.2■□□□□ 0.66
SS18-216ENST00000580751 TIAM2Q8IVF5 1701 aa19.2■□□□□ 0.66
SS18-216ENST00000580751 TAF5LO75529 589 aa19.2■□□□□ 0.66
SS18-216ENST00000580751 PDE8BO95263 885 aa19.2■□□□□ 0.66
SS18-216ENST00000580751 G3BP1Q13283 466 aaKnown RBP eCLIP19.2■□□□□ 0.66
SS18-216ENST00000580751 AOC3Q16853 763 aa19.2■□□□□ 0.66
SS18-216ENST00000580751 JDP2Q8WYK2 163 aa19.2■□□□□ 0.66
SS18-216ENST00000580751 ZC3H12CQ9C0D7 883 aaKnown RBP19.2■□□□□ 0.66
SS18-216ENST00000580751 SURF6O75683 361 aaKnown RBP19.19■□□□□ 0.66
SS18-216ENST00000580751 OS9Q13438 667 aaPredicted RBP19.19■□□□□ 0.66
SS18-216ENST00000580751 HDAC1Q13547 482 aaPredicted RBP19.19■□□□□ 0.66
SS18-216ENST00000580751 UBE4AQ14139 1066 aa19.19■□□□□ 0.66
SS18-216ENST00000580751 SIRT2Q8IXJ6 389 aa19.19■□□□□ 0.66
SS18-216ENST00000580751 VGLL2Q8N8G2 317 aa19.19■□□□□ 0.66
SS18-216ENST00000580751 CEP126Q9P2H0 1117 aa19.19■□□□□ 0.66
SS18-216ENST00000580751 NOP58Q9Y2X3 529 aaKnown RBP19.19■□□□□ 0.66
SS18-216ENST00000580751 PUM3Q15397 648 aaKnown RBP19.18■□□□□ 0.66
SS18-216ENST00000580751 HSP90AB4PQ58FF6 505 aa19.18■□□□□ 0.66
SS18-216ENST00000580751 NIM1KQ8IY84 436 aa19.18■□□□□ 0.66
SS18-216ENST00000580751 RWDD1Q9H446 243 aaPredicted RBP19.18■□□□□ 0.66
SS18-216ENST00000580751 RIMBP2O15034 1052 aa19.17■□□□□ 0.66
SS18-216ENST00000580751 GPR101Q96P66 508 aaPredicted RBP19.17■□□□□ 0.66
SS18-216ENST00000580751 C15orf52Q6ZUT6 534 aaKnown RBP19.16■□□□□ 0.66
SS18-216ENST00000580751 CENPQQ7L2Z9 268 aaPredicted RBP19.16■□□□□ 0.66
SS18-216ENST00000580751 ERC1Q8IUD2 1116 aa19.16■□□□□ 0.66
SS18-216ENST00000580751 PCDHB15Q9Y5E8 787 aa19.16■□□□□ 0.66
SS18-216ENST00000580751 COL4A5P29400 1685 aa19.16■□□□□ 0.66
SS18-216ENST00000580751 WTIPA6NIX2 430 aaPredicted RBP19.15■□□□□ 0.66
SS18-216ENST00000580751 G3V3G9 751 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 457.9 ms