RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TAF5LO75529 589 aa30.87■■■□□ 2.53
SHMT1-207ENST00000580002 GSPT1P15170 499 aaKnown RBP30.87■■■□□ 2.53
SHMT1-207ENST00000580002 RPS8P62241 208 aaKnown RBP30.87■■■□□ 2.53
SHMT1-207ENST00000580002 LRP5O75197 1615 aa30.87■■■□□ 2.53
SHMT1-207ENST00000580002 SPEF2Q9C093 1822 aa30.87■■■□□ 2.53
SHMT1-207ENST00000580002 IFIT2P09913 472 aaKnown RBP30.87■■■□□ 2.53
SHMT1-207ENST00000580002 DBNDD2Q9BQY9 259 aa30.87■■■□□ 2.53
SHMT1-207ENST00000580002 DBNLQ9UJU6 430 aaKnown RBP30.86■■■□□ 2.53
SHMT1-207ENST00000580002 STAP2Q9UGK3 403 aa30.85■■■□□ 2.53
SHMT1-207ENST00000580002 RPGRQ92834 1020 aaKnown RBP30.84■■■□□ 2.53
SHMT1-207ENST00000580002 NEUROD6Q96NK8 337 aa30.84■■■□□ 2.53
SHMT1-207ENST00000580002 BSDC1Q9NW68 430 aaPredicted RBP30.84■■■□□ 2.53
SHMT1-207ENST00000580002 CHRNDQ07001 517 aa30.84■■■□□ 2.53
SHMT1-207ENST00000580002 A0A1B0GUL7 405 aa30.83■■■□□ 2.53
SHMT1-207ENST00000580002 ADORA1P30542 326 aa30.83■■■□□ 2.53
SHMT1-207ENST00000580002 GRAPQ13588 217 aa30.83■■■□□ 2.53
SHMT1-207ENST00000580002 TTC22Q5TAA0 569 aa30.83■■■□□ 2.53
SHMT1-207ENST00000580002 GRAPLQ8TC17 118 aaPredicted RBP30.83■■■□□ 2.53
SHMT1-207ENST00000580002 OSBPL3Q9H4L5 887 aa30.83■■■□□ 2.53
SHMT1-207ENST00000580002 MINPP1Q9UNW1 487 aa30.83■■■□□ 2.53
SHMT1-207ENST00000580002 PI4K2BQ8TCG2 481 aa30.82■■■□□ 2.52
SHMT1-207ENST00000580002 PDE8BO95263 885 aa30.82■■■□□ 2.52
SHMT1-207ENST00000580002 SRGNP10124 158 aa30.82■■■□□ 2.52
SHMT1-207ENST00000580002 GPR108Q9NPR9 543 aa30.82■■■□□ 2.52
SHMT1-207ENST00000580002 MROH5Q6ZUA9 1318 aa30.81■■■□□ 2.52
SHMT1-207ENST00000580002 ZNF609O15014 1411 aa30.8■■■□□ 2.52
SHMT1-207ENST00000580002 CHRNA5P30532 468 aa30.8■■■□□ 2.52
SHMT1-207ENST00000580002 RBM17Q96I25 401 aaKnown RBP30.8■■■□□ 2.52
SHMT1-207ENST00000580002 MAP4K4O95819 1239 aaPredicted RBP30.79■■■□□ 2.52
SHMT1-207ENST00000580002 HOXA10P31260 410 aaPredicted RBP30.79■■■□□ 2.52
SHMT1-207ENST00000580002 PDE6BP35913 854 aa30.79■■■□□ 2.52
SHMT1-207ENST00000580002 MTFR1LQ9H019 292 aa30.79■■■□□ 2.52
SHMT1-207ENST00000580002 ATP2B3Q16720 1220 aa30.78■■■□□ 2.52
SHMT1-207ENST00000580002 FGFR2P21802 821 aa30.77■■■□□ 2.52
SHMT1-207ENST00000580002 C2CD5Q86YS7 1000 aa30.77■■■□□ 2.52
SHMT1-207ENST00000580002 PELP1Q8IZL8 1130 aaKnown RBP30.77■■■□□ 2.52
SHMT1-207ENST00000580002 XAGE2Q96GT9 111 aa30.77■■■□□ 2.52
SHMT1-207ENST00000580002 ECHDC1Q9NTX5 307 aa30.77■■■□□ 2.52
SHMT1-207ENST00000580002 C8orf34Q49A92 452 aa30.76■■■□□ 2.51
SHMT1-207ENST00000580002 BMP2KLQ5H9B9 411 aa30.76■■■□□ 2.51
SHMT1-207ENST00000580002 CRAMP1Q96RY5 1269 aa30.76■■■□□ 2.51
SHMT1-207ENST00000580002 AKAP2Q9Y2D5 859 aa30.76■■■□□ 2.51
SHMT1-207ENST00000580002 COL11A2P13942 1736 aaPredicted RBP30.75■■■□□ 2.51
SHMT1-207ENST00000580002 NDUFB9Q9Y6M9 179 aa30.75■■■□□ 2.51
SHMT1-207ENST00000580002 NPR1P16066 1061 aa30.74■■■□□ 2.51
SHMT1-207ENST00000580002 SDSP20132 328 aa30.74■■■□□ 2.51
SHMT1-207ENST00000580002 OLFM4Q6UX06 510 aa30.74■■■□□ 2.51
SHMT1-207ENST00000580002 ZNF622Q969S3 477 aaKnown RBP eCLIP30.74■■■□□ 2.51
SHMT1-207ENST00000580002 BOLA2Q9H3K6 86 aa30.74■■■□□ 2.51
SHMT1-207ENST00000580002 TTC41PQ6P2S7 1318 aa30.73■■■□□ 2.51
SHMT1-207ENST00000580002 PUM3Q15397 648 aaKnown RBP30.73■■■□□ 2.51
SHMT1-207ENST00000580002 MASTLQ96GX5 879 aa30.72■■■□□ 2.51
SHMT1-207ENST00000580002 SGIP1Q9BQI5 828 aa30.72■■■□□ 2.51
SHMT1-207ENST00000580002 AOX1Q06278 1338 aa30.71■■■□□ 2.51
SHMT1-207ENST00000580002 C10orf71Q711Q0 1435 aa30.71■■■□□ 2.51
SHMT1-207ENST00000580002 H0YIN7 160 aa30.71■■■□□ 2.51
SHMT1-207ENST00000580002 KLRK1P26718 216 aa30.7■■■□□ 2.51
SHMT1-207ENST00000580002 LPIN2Q92539 896 aa30.7■■■□□ 2.51
SHMT1-207ENST00000580002 EDC3Q96F86 508 aaKnown RBP30.7■■■□□ 2.51
SHMT1-207ENST00000580002 BBOX1O75936 387 aa30.69■■■□□ 2.5
SHMT1-207ENST00000580002 PTGER2P43116 358 aa30.69■■■□□ 2.5
SHMT1-207ENST00000580002 GLRX3O76003 335 aaKnown RBP30.69■■■□□ 2.5
SHMT1-207ENST00000580002 GPSM2P81274 684 aa30.69■■■□□ 2.5
SHMT1-207ENST00000580002 GPATCH3Q96I76 525 aa30.69■■■□□ 2.5
SHMT1-207ENST00000580002 A0A0G2JLW4 131 aa30.68■■■□□ 2.5
SHMT1-207ENST00000580002 POLD1P28340 1107 aa30.68■■■□□ 2.5
SHMT1-207ENST00000580002 RILPL2Q969X0 211 aa30.68■■■□□ 2.5
SHMT1-207ENST00000580002 TRIM6-TRIM34B2RNG4 842 aa30.67■■■□□ 2.5
SHMT1-207ENST00000580002 PPEF1O14829 653 aaPredicted RBP30.67■■■□□ 2.5
SHMT1-207ENST00000580002 ATP5JP18859 108 aa30.67■■■□□ 2.5
SHMT1-207ENST00000580002 PHKA1P46020 1223 aa30.67■■■□□ 2.5
SHMT1-207ENST00000580002 SCARF1Q14162 830 aa30.67■■■□□ 2.5
SHMT1-207ENST00000580002 GORABQ5T7V8 394 aa30.67■■■□□ 2.5
SHMT1-207ENST00000580002 GPR101Q96P66 508 aaPredicted RBP30.67■■■□□ 2.5
SHMT1-207ENST00000580002 BACH2Q9BYV9 841 aa30.67■■■□□ 2.5
SHMT1-207ENST00000580002 A0A1B0GUL6 1792 aa30.67■■■□□ 2.5
SHMT1-207ENST00000580002 ERC2O15083 957 aa30.66■■■□□ 2.5
SHMT1-207ENST00000580002 SEC24BO95487 1268 aa30.66■■■□□ 2.5
SHMT1-207ENST00000580002 SLC5A1P13866 664 aa30.66■■■□□ 2.5
SHMT1-207ENST00000580002 BCAMP50895 628 aa30.66■■■□□ 2.5
SHMT1-207ENST00000580002 ZNF219Q9P2Y4 722 aaPredicted RBP30.66■■■□□ 2.5
SHMT1-207ENST00000580002 GOLGB1Q14789 3259 aaKnown RBP30.65■■■□□ 2.5
SHMT1-207ENST00000580002 DPEP1P16444 411 aa30.65■■■□□ 2.5
SHMT1-207ENST00000580002 ANKRD2Q9GZV1 360 aa30.65■■■□□ 2.5
SHMT1-207ENST00000580002 SNRKQ9NRH2 765 aa30.65■■■□□ 2.5
SHMT1-207ENST00000580002 ANKIB1Q9P2G1 1089 aa30.65■■■□□ 2.5
SHMT1-207ENST00000580002 KCNA3P22001 575 aa30.64■■■□□ 2.5
SHMT1-207ENST00000580002 ALDH1B1P30837 517 aa30.64■■■□□ 2.5
SHMT1-207ENST00000580002 CCDC102BQ68D86 513 aa30.64■■■□□ 2.5
SHMT1-207ENST00000580002 STYK1Q6J9G0 422 aa30.64■■■□□ 2.5
SHMT1-207ENST00000580002 PI16Q6UXB8 463 aa30.64■■■□□ 2.5
SHMT1-207ENST00000580002 TXNRD3Q86VQ6 643 aa30.64■■■□□ 2.5
SHMT1-207ENST00000580002 NSFL1CQ9UNZ2 370 aaKnown RBP30.64■■■□□ 2.5
SHMT1-207ENST00000580002 IFIT1P09914 478 aaKnown RBP30.64■■■□□ 2.49
SHMT1-207ENST00000580002 GYG1P46976 350 aa30.64■■■□□ 2.49
SHMT1-207ENST00000580002 UBE4AQ14139 1066 aa30.64■■■□□ 2.49
SHMT1-207ENST00000580002 PPP1R1BQ9UD71 204 aaPredicted RBP30.64■■■□□ 2.49
SHMT1-207ENST00000580002 WWC3Q9ULE0 1092 aa30.64■■■□□ 2.49
SHMT1-207ENST00000580002 TTC39AQ5SRH9 613 aa30.63■■■□□ 2.49
SHMT1-207ENST00000580002 DNAJC2Q99543 621 aaKnown RBP30.63■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms