RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 OR13H1Q8NG92 308 aa9.93□□□□□ -0.82
SMCHD1-202ENST00000577300 ZBTB39O15060 712 aa9.92□□□□□ -0.82
SMCHD1-202ENST00000577300 H2AFB1P0C5Y9 115 aa9.92□□□□□ -0.82
SMCHD1-202ENST00000577300 H2AFB2P0C5Z0 115 aa9.92□□□□□ -0.82
SMCHD1-202ENST00000577300 IGF2-ASQ6U949 168 aa9.92□□□□□ -0.82
SMCHD1-202ENST00000577300 DEAF1O75398 565 aaPredicted RBP9.91□□□□□ -0.82
SMCHD1-202ENST00000577300 CACTIN-AS1Q8N1I8 211 aa9.91□□□□□ -0.82
SMCHD1-202ENST00000577300 Q8N3U1 123 aa9.91□□□□□ -0.82
SMCHD1-202ENST00000577300 GPR152Q8TDT2 470 aa9.91□□□□□ -0.82
SMCHD1-202ENST00000577300 SSBP4Q9BWG4 385 aaPredicted RBP9.91□□□□□ -0.82
SMCHD1-202ENST00000577300 SEPT3Q9UH03 358 aa9.91□□□□□ -0.82
SMCHD1-202ENST00000577300 SRA1Q9HD15 236 aaKnown RBP9.9□□□□□ -0.82
SMCHD1-202ENST00000577300 DLL1O00548 723 aa9.89□□□□□ -0.83
SMCHD1-202ENST00000577300 PPP1R15AO75807 674 aaPredicted RBP9.89□□□□□ -0.83
SMCHD1-202ENST00000577300 GDF6Q6KF10 455 aaPredicted RBP9.89□□□□□ -0.83
SMCHD1-202ENST00000577300 CCDC82Q8N4S0 544 aa9.89□□□□□ -0.83
SMCHD1-202ENST00000577300 HYAL2Q12891 473 aa9.88□□□□□ -0.83
SMCHD1-202ENST00000577300 TTC39BQ5VTQ0 682 aaPredicted RBP9.88□□□□□ -0.83
SMCHD1-202ENST00000577300 MAP4K3Q8IVH8 894 aa9.88□□□□□ -0.83
SMCHD1-202ENST00000577300 IL22RA1Q8N6P7 574 aa9.88□□□□□ -0.83
SMCHD1-202ENST00000577300 WFDC12Q8WWY7 111 aa9.88□□□□□ -0.83
SMCHD1-202ENST00000577300 KIF4AO95239 1232 aa9.87□□□□□ -0.83
SMCHD1-202ENST00000577300 ZMYM1Q5SVZ6 1142 aa9.87□□□□□ -0.83
SMCHD1-202ENST00000577300 COL13A1Q5TAT6 717 aaPredicted RBP9.87□□□□□ -0.83
SMCHD1-202ENST00000577300 PDE12Q6L8Q7 609 aaKnown RBP9.87□□□□□ -0.83
SMCHD1-202ENST00000577300 HELQQ8TDG4 1101 aa9.87□□□□□ -0.83
SMCHD1-202ENST00000577300 DCAF11Q8TEB1 546 aa9.87□□□□□ -0.83
SMCHD1-202ENST00000577300 TP53INP1Q96A56 240 aa9.87□□□□□ -0.83
SMCHD1-202ENST00000577300 MUC3BQ9H195 1237 aa9.87□□□□□ -0.83
SMCHD1-202ENST00000577300 ABI2Q9NYB9 513 aaPredicted RBP9.87□□□□□ -0.83
SMCHD1-202ENST00000577300 TRIM33Q9UPN9 1127 aa9.87□□□□□ -0.83
SMCHD1-202ENST00000577300 TMEM88BA6NKF7 163 aa9.86□□□□□ -0.83
SMCHD1-202ENST00000577300 NOS3P29474 1203 aa9.86□□□□□ -0.83
SMCHD1-202ENST00000577300 PRSS36Q5K4E3 855 aa9.86□□□□□ -0.83
SMCHD1-202ENST00000577300 SPACA7Q96KW9 195 aa9.86□□□□□ -0.83
SMCHD1-202ENST00000577300 RPLP1P05386 114 aaKnown RBP9.85□□□□□ -0.83
SMCHD1-202ENST00000577300 IREB2P48200 963 aaKnown RBP9.85□□□□□ -0.83
SMCHD1-202ENST00000577300 SETDB1Q15047 1291 aa9.85□□□□□ -0.83
SMCHD1-202ENST00000577300 NUDT16Q96DE0 195 aaKnown RBP9.85□□□□□ -0.83
SMCHD1-202ENST00000577300 SCNN1AP37088 669 aa9.84□□□□□ -0.83
SMCHD1-202ENST00000577300 TMEM130Q8N3G9 435 aa9.84□□□□□ -0.83
SMCHD1-202ENST00000577300 MRPL18Q9H0U6 180 aaKnown RBP9.84□□□□□ -0.83
SMCHD1-202ENST00000577300 SSFA2P28290 1259 aa9.83□□□□□ -0.84
SMCHD1-202ENST00000577300 FOXD4L6Q3SYB3 417 aaPredicted RBP9.83□□□□□ -0.84
SMCHD1-202ENST00000577300 XKR5Q6UX68 686 aa9.83□□□□□ -0.84
SMCHD1-202ENST00000577300 FOXD4L3Q6VB84 417 aaPredicted RBP9.83□□□□□ -0.84
SMCHD1-202ENST00000577300 ATCAYQ86WG3 371 aa9.83□□□□□ -0.84
SMCHD1-202ENST00000577300 ELP3Q9H9T3 547 aa9.83□□□□□ -0.84
SMCHD1-202ENST00000577300 PPME1Q9Y570 386 aa9.83□□□□□ -0.84
SMCHD1-202ENST00000577300 SMNDC1O75940 238 aaKnown RBP eCLIP9.82□□□□□ -0.84
SMCHD1-202ENST00000577300 ATP11AP98196 1134 aa9.82□□□□□ -0.84
SMCHD1-202ENST00000577300 NOM1Q5C9Z4 860 aaKnown RBP9.82□□□□□ -0.84
SMCHD1-202ENST00000577300 MEGF10Q96KG7 1140 aa9.82□□□□□ -0.84
SMCHD1-202ENST00000577300 C1orf115Q9H7X2 142 aa9.82□□□□□ -0.84
SMCHD1-202ENST00000577300 AKTIPQ9H8T0 292 aa9.82□□□□□ -0.84
SMCHD1-202ENST00000577300 TMEM63CQ9P1W3 806 aa9.82□□□□□ -0.84
SMCHD1-202ENST00000577300 CYP2E1P05181 493 aaPredicted RBP9.81□□□□□ -0.84
SMCHD1-202ENST00000577300 CEP135Q66GS9 1140 aa9.81□□□□□ -0.84
SMCHD1-202ENST00000577300 ZNF438Q7Z4V0 828 aa9.81□□□□□ -0.84
SMCHD1-202ENST00000577300 CEP120Q8N960 986 aa9.81□□□□□ -0.84
SMCHD1-202ENST00000577300 EDEM1Q92611 657 aa9.81□□□□□ -0.84
SMCHD1-202ENST00000577300 RASSF4Q9H2L5 321 aa9.81□□□□□ -0.84
SMCHD1-202ENST00000577300 PCSK2P16519 638 aa9.8□□□□□ -0.84
SMCHD1-202ENST00000577300 DZIP1LQ8IYY4 767 aaKnown RBP9.8□□□□□ -0.84
SMCHD1-202ENST00000577300 GTF3C2Q8WUA4 911 aaPredicted RBP9.8□□□□□ -0.84
SMCHD1-202ENST00000577300 PBX4Q9BYU1 374 aa9.8□□□□□ -0.84
SMCHD1-202ENST00000577300 F8W735 103 aaPredicted RBP9.79□□□□□ -0.84
SMCHD1-202ENST00000577300 PDGFAP04085 211 aa9.79□□□□□ -0.84
SMCHD1-202ENST00000577300 MZF1P28698 734 aaPredicted RBP9.79□□□□□ -0.84
SMCHD1-202ENST00000577300 CDC27P30260 824 aa9.79□□□□□ -0.84
SMCHD1-202ENST00000577300 NCAPG2Q86XI2 1143 aa9.79□□□□□ -0.84
SMCHD1-202ENST00000577300 MPSTP25325 297 aa9.78□□□□□ -0.84
SMCHD1-202ENST00000577300 EIF1AXP47813 144 aaKnown RBP9.78□□□□□ -0.84
SMCHD1-202ENST00000577300 DNM1Q05193 864 aaKnown RBP9.78□□□□□ -0.84
SMCHD1-202ENST00000577300 ALKBH2Q6NS38 261 aa9.78□□□□□ -0.84
SMCHD1-202ENST00000577300 LACRTQ9GZZ8 138 aa9.78□□□□□ -0.84
SMCHD1-202ENST00000577300 CNTN3Q9P232 1028 aa9.78□□□□□ -0.84
SMCHD1-202ENST00000577300 SALL4Q9UJQ4 1053 aa9.78□□□□□ -0.84
SMCHD1-202ENST00000577300 LINC01387J3KSC0 135 aa9.77□□□□□ -0.85
SMCHD1-202ENST00000577300 NPR3P17342 541 aa9.77□□□□□ -0.85
SMCHD1-202ENST00000577300 Q6ZS46 218 aa9.77□□□□□ -0.85
SMCHD1-202ENST00000577300 GALNT11Q8NCW6 608 aa9.77□□□□□ -0.85
SMCHD1-202ENST00000577300 GGNBP2Q9H3C7 697 aa9.77□□□□□ -0.85
SMCHD1-202ENST00000577300 ALX3O95076 343 aa9.76□□□□□ -0.85
SMCHD1-202ENST00000577300 ADAMTSL4Q6UY14 1074 aa9.76□□□□□ -0.85
SMCHD1-202ENST00000577300 ADAM19Q9H013 955 aa9.76□□□□□ -0.85
SMCHD1-202ENST00000577300 KANSL3Q9P2N6 904 aa9.76□□□□□ -0.85
SMCHD1-202ENST00000577300 SCO2A0A1W2PP80 73 aa9.75□□□□□ -0.85
SMCHD1-202ENST00000577300 TM4SF5O14894 197 aa9.75□□□□□ -0.85
SMCHD1-202ENST00000577300 PTPRAP18433 802 aa9.75□□□□□ -0.85
SMCHD1-202ENST00000577300 PRR23CQ6ZRP0 262 aa9.75□□□□□ -0.85
SMCHD1-202ENST00000577300 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.75□□□□□ -0.85
SMCHD1-202ENST00000577300 C1orf127Q8N9H9 656 aa9.75□□□□□ -0.85
SMCHD1-202ENST00000577300 TTC16Q8NEE8 873 aa9.75□□□□□ -0.85
SMCHD1-202ENST00000577300 PMEPA1Q969W9 287 aa9.75□□□□□ -0.85
SMCHD1-202ENST00000577300 MTMR7Q9Y216 660 aa9.75□□□□□ -0.85
SMCHD1-202ENST00000577300 CES1P23141 567 aa9.74□□□□□ -0.85
SMCHD1-202ENST00000577300 CD68P34810 354 aaPredicted RBP9.74□□□□□ -0.85
SMCHD1-202ENST00000577300 C8orf34Q49A92 452 aa9.74□□□□□ -0.85
SMCHD1-202ENST00000577300 ARTNQ5T4W7 220 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms