RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 CCDC57Q2TAC2 916 aa17.1■□□□□ 0.33
CIITA-210ENST00000575513 RABL6Q3YEC7 729 aaPredicted RBP17.1■□□□□ 0.33
CIITA-210ENST00000575513 EPHA10Q5JZY3 1008 aa17.1■□□□□ 0.33
CIITA-210ENST00000575513 C16orf71Q8IYS4 520 aaPredicted RBP17.1■□□□□ 0.33
CIITA-210ENST00000575513 RBM46Q8TBY0 533 aaKnown RBP17.1■□□□□ 0.33
CIITA-210ENST00000575513 KAZALD1Q96I82 304 aa17.1■□□□□ 0.33
CIITA-210ENST00000575513 HDAC5Q9UQL6 1122 aa17.1■□□□□ 0.33
CIITA-210ENST00000575513 BCAR3O75815 825 aa17.09■□□□□ 0.33
CIITA-210ENST00000575513 INTS3Q68E01 1043 aaKnown RBP17.09■□□□□ 0.33
CIITA-210ENST00000575513 SUCLG2Q96I99 432 aa17.09■□□□□ 0.33
CIITA-210ENST00000575513 ZC3H12CQ9C0D7 883 aaKnown RBP17.09■□□□□ 0.33
CIITA-210ENST00000575513 ANKRD2Q9GZV1 360 aa17.09■□□□□ 0.33
CIITA-210ENST00000575513 ZNF541Q9H0D2 1346 aa17.09■□□□□ 0.33
CIITA-210ENST00000575513 COL4A1P02462 1669 aa17.09■□□□□ 0.33
CIITA-210ENST00000575513 MYH3P11055 1940 aa17.09■□□□□ 0.33
CIITA-210ENST00000575513 WDR90Q96KV7 1748 aa17.08■□□□□ 0.32
CIITA-210ENST00000575513 UFL1O94874 794 aa17.08■□□□□ 0.32
CIITA-210ENST00000575513 ATF7IPQ6VMQ6 1270 aa17.08■□□□□ 0.32
CIITA-210ENST00000575513 LEMD3Q9Y2U8 911 aa17.08■□□□□ 0.32
CIITA-210ENST00000575513 COL4A5P29400 1685 aa17.07■□□□□ 0.32
CIITA-210ENST00000575513 DUOX1Q9NRD9 1551 aa17.07■□□□□ 0.32
CIITA-210ENST00000575513 TRIM27P14373 513 aa17.07■□□□□ 0.32
CIITA-210ENST00000575513 CXCL9Q07325 125 aa17.07■□□□□ 0.32
CIITA-210ENST00000575513 FSTL1Q12841 308 aa17.07■□□□□ 0.32
CIITA-210ENST00000575513 TNIP1Q15025 636 aa17.07■□□□□ 0.32
CIITA-210ENST00000575513 BICC1Q9H694 974 aaKnown RBP17.07■□□□□ 0.32
CIITA-210ENST00000575513 CHMP3Q9Y3E7 222 aa17.07■□□□□ 0.32
CIITA-210ENST00000575513 ZKSCAN2Q63HK3 967 aa17.06■□□□□ 0.32
CIITA-210ENST00000575513 HACL1Q9UJ83 578 aa17.06■□□□□ 0.32
CIITA-210ENST00000575513 LTBP1Q14766 1721 aa17.05■□□□□ 0.32
CIITA-210ENST00000575513 RIMBP2O15034 1052 aa17.05■□□□□ 0.32
CIITA-210ENST00000575513 CIAPIN1Q6FI81 312 aa17.05■□□□□ 0.32
CIITA-210ENST00000575513 LDHAL6AQ6ZMR3 332 aa17.05■□□□□ 0.32
CIITA-210ENST00000575513 ANKRD44Q8N8A2 993 aa17.05■□□□□ 0.32
CIITA-210ENST00000575513 FRAT1Q92837 279 aaPredicted RBP17.05■□□□□ 0.32
CIITA-210ENST00000575513 YDJCA8MPS7 323 aa17.04■□□□□ 0.32
CIITA-210ENST00000575513 UBTFL1P0CB47 393 aaPredicted RBP17.04■□□□□ 0.32
CIITA-210ENST00000575513 CHRNDQ07001 517 aa17.04■□□□□ 0.32
CIITA-210ENST00000575513 TAF7LQ5H9L4 462 aa17.04■□□□□ 0.32
CIITA-210ENST00000575513 PODNQ7Z5L7 613 aa17.04■□□□□ 0.32
CIITA-210ENST00000575513 PNMA8AQ86V59 439 aaPredicted RBP17.04■□□□□ 0.32
CIITA-210ENST00000575513 SMC1BQ8NDV3 1235 aa17.04■□□□□ 0.32
CIITA-210ENST00000575513 TAF1DQ9H5J8 278 aaPredicted RBP17.04■□□□□ 0.32
CIITA-210ENST00000575513 GJA3Q9Y6H8 435 aa17.04■□□□□ 0.32
CIITA-210ENST00000575513 MED23Q9ULK4 1368 aa17.03■□□□□ 0.32
CIITA-210ENST00000575513 ECE2O60344 883 aa17.03■□□□□ 0.32
CIITA-210ENST00000575513 GNAI3P08754 354 aa17.03■□□□□ 0.32
CIITA-210ENST00000575513 ZNF804BA4D1E1 1349 aa17.02■□□□□ 0.32
CIITA-210ENST00000575513 G3V3G9 751 aa17.02■□□□□ 0.32
CIITA-210ENST00000575513 LMOD1P29536 600 aaPredicted RBP17.02■□□□□ 0.32
CIITA-210ENST00000575513 EPHX2P34913 555 aa17.02■□□□□ 0.32
CIITA-210ENST00000575513 SCNN1DP51172 638 aa17.02■□□□□ 0.32
CIITA-210ENST00000575513 DCAF8Q5TAQ9 597 aa17.02■□□□□ 0.32
CIITA-210ENST00000575513 C15orf52Q6ZUT6 534 aaKnown RBP17.02■□□□□ 0.32
CIITA-210ENST00000575513 DBNDD1Q9H9R9 158 aa17.02■□□□□ 0.32
CIITA-210ENST00000575513 CNNM1Q9NRU3 951 aa17.02■□□□□ 0.32
CIITA-210ENST00000575513 RAD17O75943 681 aa17.01■□□□□ 0.31
CIITA-210ENST00000575513 DOK7Q18PE1 504 aa17.01■□□□□ 0.31
CIITA-210ENST00000575513 DPF2Q92785 391 aa17.01■□□□□ 0.31
CIITA-210ENST00000575513 ZNF594Q96JF6 807 aaPredicted RBP17.01■□□□□ 0.31
CIITA-210ENST00000575513 GPR101Q96P66 508 aaPredicted RBP17.01■□□□□ 0.31
CIITA-210ENST00000575513 RIPOR2Q9Y4F9 1068 aa17.01■□□□□ 0.31
CIITA-210ENST00000575513 SCN4AP35499 1836 aa17■□□□□ 0.31
CIITA-210ENST00000575513 VIL1P09327 827 aaKnown RBP17■□□□□ 0.31
CIITA-210ENST00000575513 RPS12P25398 132 aaKnown RBP17■□□□□ 0.31
CIITA-210ENST00000575513 KCNJ4P48050 445 aa17■□□□□ 0.31
CIITA-210ENST00000575513 LDHDQ86WU2 507 aa17■□□□□ 0.31
CIITA-210ENST00000575513 COA1Q9GZY4 146 aa17■□□□□ 0.31
CIITA-210ENST00000575513 GPRC5DQ9NZD1 345 aa17■□□□□ 0.31
CIITA-210ENST00000575513 FBXO3Q9UK99 471 aa17■□□□□ 0.31
CIITA-210ENST00000575513 MROH5Q6ZUA9 1318 aa16.99■□□□□ 0.31
CIITA-210ENST00000575513 WTIPA6NIX2 430 aaPredicted RBP16.99■□□□□ 0.31
CIITA-210ENST00000575513 PSMD14O00487 310 aa16.99■□□□□ 0.31
CIITA-210ENST00000575513 HSPA6P17066 643 aa16.99■□□□□ 0.31
CIITA-210ENST00000575513 USP50Q70EL3 339 aaPredicted RBP16.99■□□□□ 0.31
CIITA-210ENST00000575513 MEIS3Q99687 375 aa16.99■□□□□ 0.31
CIITA-210ENST00000575513 TAF5LO75529 589 aa16.98■□□□□ 0.31
CIITA-210ENST00000575513 MS4A1P11836 297 aa16.98■□□□□ 0.31
CIITA-210ENST00000575513 EPS15P42566 896 aa16.98■□□□□ 0.31
CIITA-210ENST00000575513 RFX5P48382 616 aaPredicted RBP16.98■□□□□ 0.31
CIITA-210ENST00000575513 GMPSP49915 693 aaPredicted RBP16.98■□□□□ 0.31
CIITA-210ENST00000575513 UBE4AQ14139 1066 aa16.98■□□□□ 0.31
CIITA-210ENST00000575513 CHADLQ6NUI6 762 aa16.98■□□□□ 0.31
CIITA-210ENST00000575513 DZIP1LQ8IYY4 767 aaKnown RBP16.98■□□□□ 0.31
CIITA-210ENST00000575513 CLUAP1Q96AJ1 413 aa16.98■□□□□ 0.31
CIITA-210ENST00000575513 ADARB2Q9NS39 739 aaKnown RBP16.98■□□□□ 0.31
CIITA-210ENST00000575513 LRRFIP2Q9Y608 721 aaKnown RBP16.98■□□□□ 0.31
CIITA-210ENST00000575513 MTX1Q13505 466 aa16.97■□□□□ 0.31
CIITA-210ENST00000575513 FTSJ3Q8IY81 847 aaKnown RBP16.97■□□□□ 0.31
CIITA-210ENST00000575513 TMEM57Q8N5G2 664 aa16.97■□□□□ 0.31
CIITA-210ENST00000575513 AGBL3Q8NEM8 1001 aa16.97■□□□□ 0.31
CIITA-210ENST00000575513 HELBQ8NG08 1087 aaPredicted RBP16.97■□□□□ 0.31
CIITA-210ENST00000575513 PUS3Q9BZE2 481 aaKnown RBP16.97■□□□□ 0.31
CIITA-210ENST00000575513 KCNQ5Q9NR82 932 aa16.97■□□□□ 0.31
CIITA-210ENST00000575513 IRS2Q9Y4H2 1338 aa16.96■□□□□ 0.31
CIITA-210ENST00000575513 ZNF609O15014 1411 aa16.96■□□□□ 0.31
CIITA-210ENST00000575513 USP17L3A6NCW0 530 aa16.96■□□□□ 0.31
CIITA-210ENST00000575513 USP17L4A6NCW7 530 aa16.96■□□□□ 0.31
CIITA-210ENST00000575513 H7C1D1 291 aa16.96■□□□□ 0.31
CIITA-210ENST00000575513 GNAI2P04899 355 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms