RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 CRKLP46109 303 aaKnown RBP16.8■□□□□ 0.28
VPS33B-208ENST00000574755 EIF5P55010 431 aaKnown RBP16.8■□□□□ 0.28
VPS33B-208ENST00000574755 USPL1Q5W0Q7 1092 aa16.8■□□□□ 0.28
VPS33B-208ENST00000574755 LDHAL6AQ6ZMR3 332 aa16.8■□□□□ 0.28
VPS33B-208ENST00000574755 ZSCAN31Q96LW9 406 aaPredicted RBP16.8■□□□□ 0.28
VPS33B-208ENST00000574755 ANKRD18BA2A2Z9 1011 aa16.8■□□□□ 0.28
VPS33B-208ENST00000574755 PRPF40AO75400 957 aaKnown RBP16.8■□□□□ 0.28
VPS33B-208ENST00000574755 TTC39AQ5SRH9 613 aa16.8■□□□□ 0.28
VPS33B-208ENST00000574755 INTS5Q6P9B9 1019 aaKnown RBP16.8■□□□□ 0.28
VPS33B-208ENST00000574755 XAGE2Q96GT9 111 aa16.8■□□□□ 0.28
VPS33B-208ENST00000574755 CHAMP1Q96JM3 812 aa16.8■□□□□ 0.28
VPS33B-208ENST00000574755 SH2B1Q9NRF2 756 aaPredicted RBP16.8■□□□□ 0.28
VPS33B-208ENST00000574755 TAF6LQ9Y6J9 622 aa16.8■□□□□ 0.28
VPS33B-208ENST00000574755 WDR33Q9C0J8 1336 aaKnown RBP16.79■□□□□ 0.28
VPS33B-208ENST00000574755 FKBP4Q02790 459 aaKnown RBP eCLIP16.79■□□□□ 0.28
VPS33B-208ENST00000574755 METTL24Q5JXM2 366 aa16.79■□□□□ 0.28
VPS33B-208ENST00000574755 CCDC83Q8IWF9 413 aa16.79■□□□□ 0.28
VPS33B-208ENST00000574755 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.79■□□□□ 0.28
VPS33B-208ENST00000574755 SMC3Q9UQE7 1217 aa16.79■□□□□ 0.28
VPS33B-208ENST00000574755 U3KPZ7 1027 aaPredicted RBP16.79■□□□□ 0.28
VPS33B-208ENST00000574755 PDE8AO60658 829 aa16.79■□□□□ 0.28
VPS33B-208ENST00000574755 ADORA1P30542 326 aa16.79■□□□□ 0.28
VPS33B-208ENST00000574755 TSGA10IPQ3SY00 556 aa16.79■□□□□ 0.28
VPS33B-208ENST00000574755 TICAM2Q86XR7 235 aa16.79■□□□□ 0.28
VPS33B-208ENST00000574755 ZNF34Q8IZ26 560 aa16.79■□□□□ 0.28
VPS33B-208ENST00000574755 HELLSQ9NRZ9 838 aa16.79■□□□□ 0.28
VPS33B-208ENST00000574755 RIC1Q4ADV7 1423 aa16.78■□□□□ 0.28
VPS33B-208ENST00000574755 KRT32Q14532 448 aa16.78■□□□□ 0.28
VPS33B-208ENST00000574755 SLFNL1Q499Z3 407 aa16.78■□□□□ 0.28
VPS33B-208ENST00000574755 CNNM1Q9NRU3 951 aa16.78■□□□□ 0.28
VPS33B-208ENST00000574755 NCLP19338 710 aaKnown RBP16.78■□□□□ 0.28
VPS33B-208ENST00000574755 RPS6KB1P23443 525 aa16.78■□□□□ 0.28
VPS33B-208ENST00000574755 COL9A3Q14050 684 aaPredicted RBP16.78■□□□□ 0.28
VPS33B-208ENST00000574755 TCEANC2Q96MN5 208 aa16.78■□□□□ 0.28
VPS33B-208ENST00000574755 RIPOR2Q9Y4F9 1068 aa16.78■□□□□ 0.28
VPS33B-208ENST00000574755 ITPK1Q13572 414 aa16.77■□□□□ 0.28
VPS33B-208ENST00000574755 ANKRD1Q15327 319 aa16.77■□□□□ 0.28
VPS33B-208ENST00000574755 ME3Q16798 604 aa16.77■□□□□ 0.28
VPS33B-208ENST00000574755 TPCN1Q9ULQ1 816 aa16.77■□□□□ 0.28
VPS33B-208ENST00000574755 ISY1Q9ULR0 285 aaKnown RBP16.77■□□□□ 0.28
VPS33B-208ENST00000574755 ATP2B3Q16720 1220 aa16.77■□□□□ 0.27
VPS33B-208ENST00000574755 FAM98CQ17RN3 349 aaKnown RBP16.77■□□□□ 0.27
VPS33B-208ENST00000574755 ZMYM1Q5SVZ6 1142 aa16.77■□□□□ 0.27
VPS33B-208ENST00000574755 MYH14Q7Z406 1995 aaKnown RBP16.76■□□□□ 0.27
VPS33B-208ENST00000574755 KCNQ2O43526 872 aa16.76■□□□□ 0.27
VPS33B-208ENST00000574755 C8orf37Q96NL8 207 aa16.76■□□□□ 0.27
VPS33B-208ENST00000574755 RREB1Q92766 1687 aa16.76■□□□□ 0.27
VPS33B-208ENST00000574755 CICQ96RK0 1608 aaPredicted RBP16.76■□□□□ 0.27
VPS33B-208ENST00000574755 FAM177BA6PVY3 158 aa16.75■□□□□ 0.27
VPS33B-208ENST00000574755 RNF113AO15541 343 aaKnown RBP16.75■□□□□ 0.27
VPS33B-208ENST00000574755 CYP21A2P08686 494 aa16.75■□□□□ 0.27
VPS33B-208ENST00000574755 XRCC6P12956 609 aaKnown RBP eCLIP16.75■□□□□ 0.27
VPS33B-208ENST00000574755 UBAP1LF5GYI3 381 aa16.75■□□□□ 0.27
VPS33B-208ENST00000574755 SYT1P21579 422 aa16.75■□□□□ 0.27
VPS33B-208ENST00000574755 GJB2P29033 226 aa16.75■□□□□ 0.27
VPS33B-208ENST00000574755 MRE11P49959 708 aa16.75■□□□□ 0.27
VPS33B-208ENST00000574755 LRRFIP1Q32MZ4 808 aaKnown RBP16.75■□□□□ 0.27
VPS33B-208ENST00000574755 FOXD4L6Q3SYB3 417 aaPredicted RBP16.75■□□□□ 0.27
VPS33B-208ENST00000574755 SUSD4Q5VX71 490 aa16.75■□□□□ 0.27
VPS33B-208ENST00000574755 CAVIN1Q6NZI2 390 aaKnown RBP16.75■□□□□ 0.27
VPS33B-208ENST00000574755 FOXD4L3Q6VB84 417 aaPredicted RBP16.75■□□□□ 0.27
VPS33B-208ENST00000574755 SMARCC1Q92922 1105 aaPredicted RBP16.75■□□□□ 0.27
VPS33B-208ENST00000574755 NGLY1Q96IV0 654 aa16.75■□□□□ 0.27
VPS33B-208ENST00000574755 NEK1Q96PY6 1258 aa16.75■□□□□ 0.27
VPS33B-208ENST00000574755 STX6O43752 255 aa16.74■□□□□ 0.27
VPS33B-208ENST00000574755 NECAB1Q8N987 351 aa16.74■□□□□ 0.27
VPS33B-208ENST00000574755 MAST3O60307 1309 aa16.74■□□□□ 0.27
VPS33B-208ENST00000574755 SCARF1Q14162 830 aa16.74■□□□□ 0.27
VPS33B-208ENST00000574755 DSCC1Q9BVC3 393 aa16.74■□□□□ 0.27
VPS33B-208ENST00000574755 ALDH8A1Q9H2A2 487 aaPredicted RBP16.74■□□□□ 0.27
VPS33B-208ENST00000574755 GRPEL1Q9HAV7 217 aa16.74■□□□□ 0.27
VPS33B-208ENST00000574755 CAMTA2O94983 1202 aa16.73■□□□□ 0.27
VPS33B-208ENST00000574755 ZSCAN22P10073 491 aaPredicted RBP16.73■□□□□ 0.27
VPS33B-208ENST00000574755 HCLS1P14317 486 aaPredicted RBP16.73■□□□□ 0.27
VPS33B-208ENST00000574755 ST3GAL1Q11201 340 aa16.73■□□□□ 0.27
VPS33B-208ENST00000574755 TOB2Q14106 344 aaPredicted RBP16.73■□□□□ 0.27
VPS33B-208ENST00000574755 GPT2Q8TD30 523 aa16.73■□□□□ 0.27
VPS33B-208ENST00000574755 AK7Q96M32 723 aa16.73■□□□□ 0.27
VPS33B-208ENST00000574755 UTP14AQ9BVJ6 771 aaKnown RBP16.73■□□□□ 0.27
VPS33B-208ENST00000574755 ABCC12Q96J65 1359 aa16.73■□□□□ 0.27
VPS33B-208ENST00000574755 ZAP70P43403 619 aa16.73■□□□□ 0.27
VPS33B-208ENST00000574755 VGLL2Q8N8G2 317 aa16.73■□□□□ 0.27
VPS33B-208ENST00000574755 DTNBO60941 627 aa16.72■□□□□ 0.27
VPS33B-208ENST00000574755 PDE8BO95263 885 aa16.72■□□□□ 0.27
VPS33B-208ENST00000574755 HSPD1P10809 573 aaKnown RBP16.72■□□□□ 0.27
VPS33B-208ENST00000574755 GAS2L3Q86XJ1 694 aa16.72■□□□□ 0.27
VPS33B-208ENST00000574755 TCHHQ07283 1943 aa16.72■□□□□ 0.27
VPS33B-208ENST00000574755 COL5A3P25940 1745 aaPredicted RBP16.72■□□□□ 0.27
VPS33B-208ENST00000574755 ZFYP08048 801 aaPredicted RBP16.72■□□□□ 0.27
VPS33B-208ENST00000574755 WASHC4Q2M389 1173 aa16.72■□□□□ 0.27
VPS33B-208ENST00000574755 PARP10Q53GL7 1025 aa16.72■□□□□ 0.27
VPS33B-208ENST00000574755 PI16Q6UXB8 463 aa16.72■□□□□ 0.27
VPS33B-208ENST00000574755 NIP7Q9Y221 180 aaKnown RBP eCLIP16.72■□□□□ 0.27
VPS33B-208ENST00000574755 MYH7P12883 1935 aa16.72■□□□□ 0.27
VPS33B-208ENST00000574755 BCL9LQ86UU0 1499 aa16.72■□□□□ 0.27
VPS33B-208ENST00000574755 LAMA4Q16363 1823 aa16.71■□□□□ 0.27
VPS33B-208ENST00000574755 M0R2C6 588 aa16.71■□□□□ 0.27
VPS33B-208ENST00000574755 VPS72Q15906 364 aa16.71■□□□□ 0.27
VPS33B-208ENST00000574755 OSBP2Q969R2 916 aa16.71■□□□□ 0.27
VPS33B-208ENST00000574755 PANK2Q9BZ23 570 aa16.71■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms