RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 H7C1W4 665 aa23.28■■□□□ 1.32
CHD3-214ENST00000572579 EGFRP00533 1210 aa23.28■■□□□ 1.32
CHD3-214ENST00000572579 DLK2Q6UY11 383 aa23.28■■□□□ 1.32
CHD3-214ENST00000572579 WDR63Q8IWG1 891 aa23.28■■□□□ 1.32
CHD3-214ENST00000572579 STK31Q9BXU1 1019 aa23.28■■□□□ 1.32
CHD3-214ENST00000572579 CHMP4AQ9BY43 222 aa23.28■■□□□ 1.32
CHD3-214ENST00000572579 CTSWP56202 376 aa23.27■■□□□ 1.32
CHD3-214ENST00000572579 BCL2L13Q9BXK5 485 aa23.27■■□□□ 1.32
CHD3-214ENST00000572579 GLIS2Q9BZE0 524 aaPredicted RBP23.27■■□□□ 1.32
CHD3-214ENST00000572579 ECE2O60344 883 aa23.26■■□□□ 1.31
CHD3-214ENST00000572579 CASP7P55210 303 aa23.26■■□□□ 1.31
CHD3-214ENST00000572579 EXOSC9Q06265 439 aaKnown RBP23.26■■□□□ 1.31
CHD3-214ENST00000572579 FLIIQ13045 1269 aa23.26■■□□□ 1.31
CHD3-214ENST00000572579 DEFB115Q30KQ5 88 aa23.26■■□□□ 1.31
CHD3-214ENST00000572579 MICALL2Q8IY33 904 aa23.26■■□□□ 1.31
CHD3-214ENST00000572579 GREM2Q9H772 168 aa23.26■■□□□ 1.31
CHD3-214ENST00000572579 FOXN1O15353 648 aa23.25■■□□□ 1.31
CHD3-214ENST00000572579 SAMD7Q7Z3H4 446 aa23.25■■□□□ 1.31
CHD3-214ENST00000572579 DPF2Q92785 391 aa23.25■■□□□ 1.31
CHD3-214ENST00000572579 UFL1O94874 794 aa23.24■■□□□ 1.31
CHD3-214ENST00000572579 HSP90B1P14625 803 aaKnown RBP23.24■■□□□ 1.31
CHD3-214ENST00000572579 ANKIB1Q9P2G1 1089 aa23.24■■□□□ 1.31
CHD3-214ENST00000572579 ABT1Q9ULW3 272 aaKnown RBP23.24■■□□□ 1.31
CHD3-214ENST00000572579 GCKRQ14397 625 aa23.23■■□□□ 1.31
CHD3-214ENST00000572579 UBE3BQ7Z3V4 1068 aa23.23■■□□□ 1.31
CHD3-214ENST00000572579 EYA3Q99504 573 aa23.23■■□□□ 1.31
CHD3-214ENST00000572579 WBP1LQ9NX94 342 aa23.23■■□□□ 1.31
CHD3-214ENST00000572579 GGA1Q9UJY5 639 aa23.23■■□□□ 1.31
CHD3-214ENST00000572579 VIL1P09327 827 aaKnown RBP23.22■■□□□ 1.31
CHD3-214ENST00000572579 ANKRD18AQ8IVF6 992 aa23.22■■□□□ 1.31
CHD3-214ENST00000572579 FAM9BQ8IZU0 186 aa23.22■■□□□ 1.31
CHD3-214ENST00000572579 ZC3H15Q8WU90 426 aaKnown RBP23.22■■□□□ 1.31
CHD3-214ENST00000572579 ZC3H12CQ9C0D7 883 aaKnown RBP23.22■■□□□ 1.31
CHD3-214ENST00000572579 MINPP1Q9UNW1 487 aa23.22■■□□□ 1.31
CHD3-214ENST00000572579 WDR33Q9C0J8 1336 aaKnown RBP23.22■■□□□ 1.31
CHD3-214ENST00000572579 H7C1D1 291 aa23.21■■□□□ 1.31
CHD3-214ENST00000572579 NEXNQ0ZGT2 675 aa23.21■■□□□ 1.31
CHD3-214ENST00000572579 TBC1D10BQ4KMP7 808 aaPredicted RBP23.2■■□□□ 1.3
CHD3-214ENST00000572579 DNAAF4Q8WXU2 420 aa23.2■■□□□ 1.3
CHD3-214ENST00000572579 PLA2G12BQ9BX93 195 aa23.2■■□□□ 1.3
CHD3-214ENST00000572579 BSDC1Q9NW68 430 aaPredicted RBP23.2■■□□□ 1.3
CHD3-214ENST00000572579 TLL2Q9Y6L7 1015 aa23.2■■□□□ 1.3
CHD3-214ENST00000572579 F6X3S4 739 aa23.19■■□□□ 1.3
CHD3-214ENST00000572579 CELF2O95319 508 aaKnown RBP23.19■■□□□ 1.3
CHD3-214ENST00000572579 FKBP5Q13451 457 aaPredicted RBP23.19■■□□□ 1.3
CHD3-214ENST00000572579 CYP4F22Q6NT55 531 aa23.19■■□□□ 1.3
CHD3-214ENST00000572579 USP48Q86UV5 1035 aa23.19■■□□□ 1.3
CHD3-214ENST00000572579 XDHP47989 1333 aa23.18■■□□□ 1.3
CHD3-214ENST00000572579 CSF1RP07333 972 aa23.18■■□□□ 1.3
CHD3-214ENST00000572579 SAPCD2Q86UD0 394 aa23.18■■□□□ 1.3
CHD3-214ENST00000572579 TNS4Q8IZW8 715 aa23.18■■□□□ 1.3
CHD3-214ENST00000572579 CDC5LQ99459 802 aaKnown RBP23.18■■□□□ 1.3
CHD3-214ENST00000572579 ASTN2O75129 1339 aaPredicted RBP23.17■■□□□ 1.3
CHD3-214ENST00000572579 ZNF521Q96K83 1311 aa23.17■■□□□ 1.3
CHD3-214ENST00000572579 ATP2B4P23634 1241 aa23.17■■□□□ 1.3
CHD3-214ENST00000572579 RPS12P25398 132 aaKnown RBP23.17■■□□□ 1.3
CHD3-214ENST00000572579 RBM26Q5T8P6 1007 aaKnown RBP23.17■■□□□ 1.3
CHD3-214ENST00000572579 CDC37L1Q7L3B6 337 aa23.17■■□□□ 1.3
CHD3-214ENST00000572579 LINS1Q8NG48 757 aa23.17■■□□□ 1.3
CHD3-214ENST00000572579 CAPNS2Q96L46 248 aa23.17■■□□□ 1.3
CHD3-214ENST00000572579 GMLQ99445 158 aa23.17■■□□□ 1.3
CHD3-214ENST00000572579 SCN9AQ15858 1988 aa23.17■■□□□ 1.3
CHD3-214ENST00000572579 FAM161AQ3B820 660 aa23.16■■□□□ 1.3
CHD3-214ENST00000572579 BEND3Q5T5X7 828 aa23.16■■□□□ 1.3
CHD3-214ENST00000572579 TXNRD3Q86VQ6 643 aa23.16■■□□□ 1.3
CHD3-214ENST00000572579 ITGA6P23229 1130 aa23.14■■□□□ 1.29
CHD3-214ENST00000572579 KLRK1P26718 216 aa23.14■■□□□ 1.29
CHD3-214ENST00000572579 ZNF280AP59817 542 aaPredicted RBP23.14■■□□□ 1.29
CHD3-214ENST00000572579 FOXO4P98177 505 aa23.14■■□□□ 1.29
CHD3-214ENST00000572579 RSBN1LQ6PCB5 846 aaPredicted RBP23.14■■□□□ 1.29
CHD3-214ENST00000572579 ADM5C9JUS6 153 aa23.13■■□□□ 1.29
CHD3-214ENST00000572579 AOC2O75106 756 aa23.13■■□□□ 1.29
CHD3-214ENST00000572579 EPHA10Q5JZY3 1008 aa23.13■■□□□ 1.29
CHD3-214ENST00000572579 MXD3Q9BW11 206 aa23.13■■□□□ 1.29
CHD3-214ENST00000572579 ZNF408Q9H9D4 720 aa23.13■■□□□ 1.29
CHD3-214ENST00000572579 CCT4P50991 539 aaKnown RBP23.12■■□□□ 1.29
CHD3-214ENST00000572579 GRM1Q13255 1194 aa23.12■■□□□ 1.29
CHD3-214ENST00000572579 SNAP23O00161 211 aa23.11■■□□□ 1.29
CHD3-214ENST00000572579 CTCFP49711 727 aaPredicted RBP23.11■■□□□ 1.29
CHD3-214ENST00000572579 LBX1P52954 281 aa23.11■■□□□ 1.29
CHD3-214ENST00000572579 KIF4BQ2VIQ3 1234 aa23.11■■□□□ 1.29
CHD3-214ENST00000572579 PODNQ7Z5L7 613 aa23.11■■□□□ 1.29
CHD3-214ENST00000572579 MYH16Q9H6N6 1097 aa23.11■■□□□ 1.29
CHD3-214ENST00000572579 PRDM10Q9NQV6 1147 aa23.11■■□□□ 1.29
CHD3-214ENST00000572579 G3V3G9 751 aa23.1■■□□□ 1.29
CHD3-214ENST00000572579 HSPA8P11142 646 aaKnown RBP23.1■■□□□ 1.29
CHD3-214ENST00000572579 DCAF8Q5TAQ9 597 aa23.1■■□□□ 1.29
CHD3-214ENST00000572579 PAXIP1Q6ZW49 1069 aaPredicted RBP23.1■■□□□ 1.29
CHD3-214ENST00000572579 KRT26Q7Z3Y9 468 aa23.1■■□□□ 1.29
CHD3-214ENST00000572579 AGBL3Q8NEM8 1001 aa23.1■■□□□ 1.29
CHD3-214ENST00000572579 ZIC5Q96T25 663 aa23.1■■□□□ 1.29
CHD3-214ENST00000572579 ZNF609O15014 1411 aa23.09■■□□□ 1.29
CHD3-214ENST00000572579 USP17L3A6NCW0 530 aa23.09■■□□□ 1.29
CHD3-214ENST00000572579 USP17L4A6NCW7 530 aa23.09■■□□□ 1.29
CHD3-214ENST00000572579 IGHMBP2P38935 993 aaKnown RBP23.09■■□□□ 1.29
CHD3-214ENST00000572579 DACT2Q5SW24 774 aa23.09■■□□□ 1.29
CHD3-214ENST00000572579 USP17L1Q7RTZ2 530 aa23.09■■□□□ 1.29
CHD3-214ENST00000572579 MED23Q9ULK4 1368 aa23.09■■□□□ 1.29
CHD3-214ENST00000572579 IRS2Q9Y4H2 1338 aa23.08■■□□□ 1.29
CHD3-214ENST00000572579 CAPN15O75808 1086 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms