RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-207ENST00000572253 TFCP2Q12800 502 aa12.62□□□□□ -0.39
CCDC40-207ENST00000572253 COPS6Q7L5N1 327 aa12.62□□□□□ -0.39
CCDC40-207ENST00000572253 CEP57L1Q8IYX8 460 aa12.62□□□□□ -0.39
CCDC40-207ENST00000572253 RAPGEF4Q8WZA2 1011 aa12.62□□□□□ -0.39
CCDC40-207ENST00000572253 DBNLQ9UJU6 430 aaKnown RBP12.62□□□□□ -0.39
CCDC40-207ENST00000572253 PFKFB2O60825 505 aa12.62□□□□□ -0.39
CCDC40-207ENST00000572253 SARM1Q6SZW1 724 aa12.62□□□□□ -0.39
CCDC40-207ENST00000572253 DHX32Q7L7V1 743 aaKnown RBP12.62□□□□□ -0.39
CCDC40-207ENST00000572253 MRFAP1L1Q96HT8 127 aa12.62□□□□□ -0.39
CCDC40-207ENST00000572253 CGNQ9P2M7 1197 aaKnown RBP12.62□□□□□ -0.39
CCDC40-207ENST00000572253 PXDNQ92626 1479 aa12.62□□□□□ -0.39
CCDC40-207ENST00000572253 COL9A3Q14050 684 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-207ENST00000572253 ZNF790Q6PG37 636 aa12.62□□□□□ -0.39
CCDC40-207ENST00000572253 ZNF592Q92610 1267 aa12.62□□□□□ -0.39
CCDC40-207ENST00000572253 FOSBP53539 338 aa12.61□□□□□ -0.39
CCDC40-207ENST00000572253 ANKRD13DQ6ZTN6 518 aa12.61□□□□□ -0.39
CCDC40-207ENST00000572253 ATP2B3Q16720 1220 aa12.61□□□□□ -0.39
CCDC40-207ENST00000572253 CEP135Q66GS9 1140 aa12.61□□□□□ -0.39
CCDC40-207ENST00000572253 CCDC129Q6ZRS4 1044 aa12.61□□□□□ -0.39
CCDC40-207ENST00000572253 CACTINQ8WUQ7 758 aaKnown RBP12.61□□□□□ -0.39
CCDC40-207ENST00000572253 RCOR1Q9UKL0 485 aa12.61□□□□□ -0.39
CCDC40-207ENST00000572253 CYP21A2P08686 494 aa12.61□□□□□ -0.39
CCDC40-207ENST00000572253 TTC5Q8N0Z6 440 aa12.61□□□□□ -0.39
CCDC40-207ENST00000572253 SMARCC2Q8TAQ2 1214 aa12.61□□□□□ -0.39
CCDC40-207ENST00000572253 HAUS7Q99871 368 aa12.61□□□□□ -0.39
CCDC40-207ENST00000572253 SPDYE4A6NLX3 237 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 NRDCO43847 1150 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 ME1P48163 572 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 SCRN1Q12765 414 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 PDIA6Q15084 440 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 LRRC2Q9BYS8 371 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 PTPDC1A2A3K4 754 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 SLC39A6Q13433 755 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 EPHA10Q5JZY3 1008 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 DDX46Q7L014 1031 aaKnown RBP12.6□□□□□ -0.39
CCDC40-207ENST00000572253 ZSCAN20P17040 1043 aaPredicted RBP12.6□□□□□ -0.39
CCDC40-207ENST00000572253 U2AF2P26368 475 aaKnown RBP eCLIP12.6□□□□□ -0.39
CCDC40-207ENST00000572253 FAM160A1Q05DH4 1040 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 PTPN14Q15678 1187 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 UBE3BQ7Z3V4 1068 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 FSIP1Q8NA03 581 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 KBTBD3Q8NAB2 608 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 DBNDD2Q9BQY9 259 aa12.6□□□□□ -0.39
CCDC40-207ENST00000572253 OGFRQ9NZT2 677 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 GSDMDP57764 484 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 TPM4P67936 248 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 PTPN12Q05209 780 aaKnown RBP12.59□□□□□ -0.39
CCDC40-207ENST00000572253 NCBP1Q09161 790 aaKnown RBP12.59□□□□□ -0.39
CCDC40-207ENST00000572253 IQCB1Q15051 598 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 SF3A1Q15459 793 aaKnown RBP12.59□□□□□ -0.39
CCDC40-207ENST00000572253 LRRC8AQ8IWT6 810 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 NSUN7Q8NE18 718 aaKnown RBP12.59□□□□□ -0.39
CCDC40-207ENST00000572253 SDF4Q9BRK5 362 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 HELLSQ9NRZ9 838 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 SH3TC1Q8TE82 1336 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 KIF2AO00139 706 aaPredicted RBP12.59□□□□□ -0.39
CCDC40-207ENST00000572253 SKILP12757 684 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 ANKLE2Q86XL3 938 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 SLC52A2Q9HAB3 445 aa12.59□□□□□ -0.39
CCDC40-207ENST00000572253 ZNF609O15014 1411 aa12.58□□□□□ -0.39
CCDC40-207ENST00000572253 C11orf57Q6ZUT1 292 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-207ENST00000572253 FILIP1Q7Z7B0 1213 aa12.58□□□□□ -0.4
CCDC40-207ENST00000572253 NEUROD6Q96NK8 337 aa12.58□□□□□ -0.4
CCDC40-207ENST00000572253 SEC62Q99442 399 aaKnown RBP12.58□□□□□ -0.4
CCDC40-207ENST00000572253 CCDC9Q9Y3X0 531 aaKnown RBP12.58□□□□□ -0.4
CCDC40-207ENST00000572253 MRC1P22897 1456 aa12.58□□□□□ -0.4
CCDC40-207ENST00000572253 A0A087WZG4 1122 aa12.58□□□□□ -0.4
CCDC40-207ENST00000572253 SNRPA1P09661 255 aaKnown RBP12.58□□□□□ -0.4
CCDC40-207ENST00000572253 TATP17735 454 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-207ENST00000572253 APOBRQ0VD83 1088 aa12.58□□□□□ -0.4
CCDC40-207ENST00000572253 DHX8Q14562 1220 aaKnown RBP12.58□□□□□ -0.4
CCDC40-207ENST00000572253 CCDC144BQ3MJ40 725 aa12.58□□□□□ -0.4
CCDC40-207ENST00000572253 CCDC144CPQ8IYA2 1237 aa12.58□□□□□ -0.4
CCDC40-207ENST00000572253 DSCC1Q9BVC3 393 aa12.58□□□□□ -0.4
CCDC40-207ENST00000572253 TICAM2Q86XR7 235 aa12.58□□□□□ -0.4
CCDC40-207ENST00000572253 ZHX1Q9UKY1 873 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-207ENST00000572253 NDUFB9Q9Y6M9 179 aa12.58□□□□□ -0.4
CCDC40-207ENST00000572253 CCT2P78371 535 aaKnown RBP12.57□□□□□ -0.4
CCDC40-207ENST00000572253 USP28Q96RU2 1077 aa12.57□□□□□ -0.4
CCDC40-207ENST00000572253 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-207ENST00000572253 CCDC69A6NI79 296 aa12.57□□□□□ -0.4
CCDC40-207ENST00000572253 RFX5P48382 616 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-207ENST00000572253 LRRFIP1Q32MZ4 808 aaKnown RBP12.57□□□□□ -0.4
CCDC40-207ENST00000572253 MRPS27Q92552 414 aaKnown RBP12.57□□□□□ -0.4
CCDC40-207ENST00000572253 RBM33Q96EV2 1170 aaKnown RBP12.57□□□□□ -0.4
CCDC40-207ENST00000572253 NLRP2Q9NX02 1062 aa12.57□□□□□ -0.4
CCDC40-207ENST00000572253 KIF13AQ9H1H9 1805 aa12.57□□□□□ -0.4
CCDC40-207ENST00000572253 RABL6Q3YEC7 729 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-207ENST00000572253 PAG1Q9NWQ8 432 aa12.57□□□□□ -0.4
CCDC40-207ENST00000572253 GOLIM4O00461 696 aa12.56□□□□□ -0.4
CCDC40-207ENST00000572253 KIF20AO95235 890 aa12.56□□□□□ -0.4
CCDC40-207ENST00000572253 RBM6P78332 1123 aaKnown RBP12.56□□□□□ -0.4
CCDC40-207ENST00000572253 STK38Q15208 465 aa12.56□□□□□ -0.4
CCDC40-207ENST00000572253 KIF18AQ8NI77 898 aa12.56□□□□□ -0.4
CCDC40-207ENST00000572253 AOPEPQ8N6M6 819 aa12.56□□□□□ -0.4
CCDC40-207ENST00000572253 NFATC2IPQ8NCF5 419 aa12.56□□□□□ -0.4
CCDC40-207ENST00000572253 ZNF274Q96GC6 653 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-207ENST00000572253 FMNL2Q96PY5 1086 aa12.56□□□□□ -0.4
CCDC40-207ENST00000572253 RGPD2P0DJD1 1756 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms