RNA–Protein interactions for RNA: ENST00000571186.5

CIITA-205, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 1,041 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-205ENST00000571186 EGFRP00533 1210 aa18.59■□□□□ 0.57
CIITA-205ENST00000571186 RPS12P25398 132 aaKnown RBP18.59■□□□□ 0.57
CIITA-205ENST00000571186 RPS8P62241 208 aaKnown RBP18.59■□□□□ 0.57
CIITA-205ENST00000571186 RUNDC1Q96C34 613 aa18.59■□□□□ 0.57
CIITA-205ENST00000571186 GBA2Q9HCG7 927 aaPredicted RBP18.59■□□□□ 0.57
CIITA-205ENST00000571186 HYPKQ9NX55 129 aa18.59■□□□□ 0.57
CIITA-205ENST00000571186 SCN9AQ15858 1988 aa18.59■□□□□ 0.57
CIITA-205ENST00000571186 G3V3G9 751 aa18.58■□□□□ 0.56
CIITA-205ENST00000571186 HOXB7P09629 217 aa18.58■□□□□ 0.56
CIITA-205ENST00000571186 WDR43Q15061 677 aaKnown RBP eCLIP18.58■□□□□ 0.56
CIITA-205ENST00000571186 DCAF8Q5TAQ9 597 aa18.58■□□□□ 0.56
CIITA-205ENST00000571186 RGMBQ6NW40 437 aa18.58■□□□□ 0.56
CIITA-205ENST00000571186 ZC3H12CQ9C0D7 883 aaKnown RBP18.58■□□□□ 0.56
CIITA-205ENST00000571186 ADM5C9JUS6 153 aa18.57■□□□□ 0.56
CIITA-205ENST00000571186 CCDC184Q52MB2 194 aa18.57■□□□□ 0.56
CIITA-205ENST00000571186 DUSP27Q5VZP5 1158 aa18.57■□□□□ 0.56
CIITA-205ENST00000571186 RIC3Q7Z5B4 369 aa18.57■□□□□ 0.56
CIITA-205ENST00000571186 TBC1D16Q8TBP0 767 aa18.57■□□□□ 0.56
CIITA-205ENST00000571186 COL4A1P02462 1669 aa18.57■□□□□ 0.56
CIITA-205ENST00000571186 ZNF157P51786 506 aaPredicted RBP18.56■□□□□ 0.56
CIITA-205ENST00000571186 TRIM28Q13263 835 aaKnown RBP18.56■□□□□ 0.56
CIITA-205ENST00000571186 CCDC102AQ96A19 550 aa18.56■□□□□ 0.56
CIITA-205ENST00000571186 RTL9Q8NET4 1388 aa18.55■□□□□ 0.56
CIITA-205ENST00000571186 FAM155AB1AL88 458 aaPredicted RBP18.55■□□□□ 0.56
CIITA-205ENST00000571186 KIF23Q02241 960 aaPredicted RBP18.55■□□□□ 0.56
CIITA-205ENST00000571186 KIF4BQ2VIQ3 1234 aa18.55■□□□□ 0.56
CIITA-205ENST00000571186 SEC31BQ9NQW1 1179 aa18.55■□□□□ 0.56
CIITA-205ENST00000571186 ANKIB1Q9P2G1 1089 aa18.55■□□□□ 0.56
CIITA-205ENST00000571186 ADAMTS8Q9UP79 889 aa18.55■□□□□ 0.56
CIITA-205ENST00000571186 TNRC18O15417 2968 aaPredicted RBP18.54■□□□□ 0.56
CIITA-205ENST00000571186 PDE4DIPQ5VU43 2346 aa18.54■□□□□ 0.56
CIITA-205ENST00000571186 UFL1O94874 794 aa18.54■□□□□ 0.56
CIITA-205ENST00000571186 VIL1P09327 827 aaKnown RBP18.54■□□□□ 0.56
CIITA-205ENST00000571186 SULF1Q8IWU6 871 aa18.54■□□□□ 0.56
CIITA-205ENST00000571186 ZBTB38Q8NAP3 1195 aaPredicted RBP18.54■□□□□ 0.56
CIITA-205ENST00000571186 SLC34A2O95436 690 aa18.53■□□□□ 0.56
CIITA-205ENST00000571186 HSP90B1P14625 803 aaKnown RBP18.53■□□□□ 0.56
CIITA-205ENST00000571186 GOLGA2Q08379 1002 aa18.53■□□□□ 0.56
CIITA-205ENST00000571186 GGA3Q9NZ52 723 aa18.53■□□□□ 0.56
CIITA-205ENST00000571186 PODXL2Q9NZ53 605 aa18.53■□□□□ 0.56
CIITA-205ENST00000571186 GGA1Q9UJY5 639 aa18.53■□□□□ 0.56
CIITA-205ENST00000571186 ANP32CO43423 234 aa18.52■□□□□ 0.56
CIITA-205ENST00000571186 TRPA1O75762 1119 aa18.52■□□□□ 0.56
CIITA-205ENST00000571186 MYD88Q99836 296 aa18.52■□□□□ 0.56
CIITA-205ENST00000571186 PHAXQ9H814 394 aaKnown RBP18.52■□□□□ 0.56
CIITA-205ENST00000571186 MBIPQ9NS73 344 aa18.52■□□□□ 0.56
CIITA-205ENST00000571186 ASTN2O75129 1339 aaPredicted RBP18.51■□□□□ 0.55
CIITA-205ENST00000571186 ELL2O00472 640 aaPredicted RBP18.51■□□□□ 0.55
CIITA-205ENST00000571186 JARID2Q92833 1246 aaPredicted RBP18.51■□□□□ 0.55
CIITA-205ENST00000571186 CCDC85AQ96PX6 553 aaPredicted RBP18.51■□□□□ 0.55
CIITA-205ENST00000571186 RNF186Q9NXI6 227 aa18.51■□□□□ 0.55
CIITA-205ENST00000571186 SCARF1Q14162 830 aa18.5■□□□□ 0.55
CIITA-205ENST00000571186 CCDC152Q4G0S7 254 aa18.5■□□□□ 0.55
CIITA-205ENST00000571186 CDCA5Q96FF9 252 aa18.5■□□□□ 0.55
CIITA-205ENST00000571186 SAGE1Q9NXZ1 904 aa18.5■□□□□ 0.55
CIITA-205ENST00000571186 PSME4Q14997 1843 aa18.5■□□□□ 0.55
CIITA-205ENST00000571186 PDE8AO60658 829 aa18.49■□□□□ 0.55
CIITA-205ENST00000571186 ANGEL2Q5VTE6 544 aaKnown RBP18.49■□□□□ 0.55
CIITA-205ENST00000571186 RSBN1LQ6PCB5 846 aaPredicted RBP18.49■□□□□ 0.55
CIITA-205ENST00000571186 CCDC191Q8NCU4 936 aa18.49■□□□□ 0.55
CIITA-205ENST00000571186 AGBL3Q8NEM8 1001 aa18.49■□□□□ 0.55
CIITA-205ENST00000571186 CSRNP1Q96S65 589 aa18.49■□□□□ 0.55
CIITA-205ENST00000571186 PCCAP05165 728 aaPredicted RBP18.48■□□□□ 0.55
CIITA-205ENST00000571186 SLC10A3P09131 477 aa18.48■□□□□ 0.55
CIITA-205ENST00000571186 ZNF280AP59817 542 aaPredicted RBP18.48■□□□□ 0.55
CIITA-205ENST00000571186 CWC25Q9NXE8 425 aaPredicted RBP18.48■□□□□ 0.55
CIITA-205ENST00000571186 ZNF853P0CG23 659 aa18.47■□□□□ 0.55
CIITA-205ENST00000571186 ANKRD18AQ8IVF6 992 aa18.47■□□□□ 0.55
CIITA-205ENST00000571186 USP17L8P0C7I0 530 aa18.46■□□□□ 0.55
CIITA-205ENST00000571186 GNAI1P63096 354 aa18.46■□□□□ 0.55
CIITA-205ENST00000571186 MYH3P11055 1940 aa18.46■□□□□ 0.55
CIITA-205ENST00000571186 XDHP47989 1333 aa18.46■□□□□ 0.55
CIITA-205ENST00000571186 SPEF2Q9C093 1822 aa18.45■□□□□ 0.54
CIITA-205ENST00000571186 USP17L3A6NCW0 530 aa18.45■□□□□ 0.54
CIITA-205ENST00000571186 USP17L4A6NCW7 530 aa18.45■□□□□ 0.54
CIITA-205ENST00000571186 APAF1O14727 1248 aa18.45■□□□□ 0.54
CIITA-205ENST00000571186 DDX58O95786 925 aaKnown RBP18.45■□□□□ 0.54
CIITA-205ENST00000571186 ATP2B4P23634 1241 aa18.45■□□□□ 0.54
CIITA-205ENST00000571186 USP17L1Q7RTZ2 530 aa18.45■□□□□ 0.54
CIITA-205ENST00000571186 GMLQ99445 158 aa18.45■□□□□ 0.54
CIITA-205ENST00000571186 METTL22Q9BUU2 404 aaPredicted RBP18.45■□□□□ 0.54
CIITA-205ENST00000571186 MYOZ2Q9NPC6 264 aa18.45■□□□□ 0.54
CIITA-205ENST00000571186 IFT57Q9NWB7 429 aa18.45■□□□□ 0.54
CIITA-205ENST00000571186 SCAF8Q9UPN6 1271 aaKnown RBP18.45■□□□□ 0.54
CIITA-205ENST00000571186 CALD1Q05682 793 aaKnown RBP18.44■□□□□ 0.54
CIITA-205ENST00000571186 PODNQ7Z5L7 613 aa18.44■□□□□ 0.54
CIITA-205ENST00000571186 RASAL3Q86YV0 1011 aa18.44■□□□□ 0.54
CIITA-205ENST00000571186 REM2Q8IYK8 340 aaPredicted RBP18.44■□□□□ 0.54
CIITA-205ENST00000571186 C8orf58Q8NAV2 365 aa18.44■□□□□ 0.54
CIITA-205ENST00000571186 SOX10P56693 466 aa18.43■□□□□ 0.54
CIITA-205ENST00000571186 FKBP1BP68106 108 aa18.43■□□□□ 0.54
CIITA-205ENST00000571186 CCDC30Q5VVM6 783 aa18.43■□□□□ 0.54
CIITA-205ENST00000571186 MRS2Q9HD23 443 aa18.43■□□□□ 0.54
CIITA-205ENST00000571186 WTIPA6NIX2 430 aaPredicted RBP18.42■□□□□ 0.54
CIITA-205ENST00000571186 UBE2Q2LH0YL09 131 aa18.42■□□□□ 0.54
CIITA-205ENST00000571186 PRAMEF18Q5VWM3 479 aa18.42■□□□□ 0.54
CIITA-205ENST00000571186 MOB2Q70IA6 237 aa18.42■□□□□ 0.54
CIITA-205ENST00000571186 CTU1Q7Z7A3 348 aaKnown RBP18.42■□□□□ 0.54
CIITA-205ENST00000571186 CDC5LQ99459 802 aaKnown RBP18.42■□□□□ 0.54
CIITA-205ENST00000571186 CHMP4AQ9BY43 222 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms