RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 H7C1D1 291 aa13.1□□□□□ -0.31
VPS39-211ENST00000568755 MAP2K2P36507 400 aa13.1□□□□□ -0.31
VPS39-211ENST00000568755 GRM1Q13255 1194 aa13.1□□□□□ -0.31
VPS39-211ENST00000568755 RTL5Q5HYW3 569 aaPredicted RBP13.1□□□□□ -0.31
VPS39-211ENST00000568755 CDC37L1Q7L3B6 337 aa13.1□□□□□ -0.31
VPS39-211ENST00000568755 PHAXQ9H814 394 aaKnown RBP13.1□□□□□ -0.31
VPS39-211ENST00000568755 PRKRIP1Q9H875 184 aaPredicted RBP13.1□□□□□ -0.31
VPS39-211ENST00000568755 IFT57Q9NWB7 429 aa13.1□□□□□ -0.31
VPS39-211ENST00000568755 ZBTB22O15209 634 aa13.09□□□□□ -0.31
VPS39-211ENST00000568755 EGFRP00533 1210 aa13.09□□□□□ -0.31
VPS39-211ENST00000568755 RPS8P62241 208 aaKnown RBP13.09□□□□□ -0.31
VPS39-211ENST00000568755 GOLGA2Q08379 1002 aa13.09□□□□□ -0.31
VPS39-211ENST00000568755 SAMD7Q7Z3H4 446 aa13.09□□□□□ -0.31
VPS39-211ENST00000568755 ZBTB38Q8NAP3 1195 aaPredicted RBP13.09□□□□□ -0.31
VPS39-211ENST00000568755 TBC1D16Q8TBP0 767 aa13.09□□□□□ -0.31
VPS39-211ENST00000568755 ABHD8Q96I13 439 aa13.09□□□□□ -0.31
VPS39-211ENST00000568755 PODXL2Q9NZ53 605 aa13.09□□□□□ -0.31
VPS39-211ENST00000568755 ZNF609O15014 1411 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 C6orf229H3BNL8 230 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 APAF1O14727 1248 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 RIMBP2O15034 1052 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 ECE2O60344 883 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 RPS12P25398 132 aaKnown RBP13.08□□□□□ -0.32
VPS39-211ENST00000568755 GNAI1P63096 354 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 RIC3Q7Z5B4 369 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 EYA3Q99504 573 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 BEGAINQ9BUH8 593 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 ZNF408Q9H9D4 720 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 SEC31BQ9NQW1 1179 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 KCNQ5Q9NR82 932 aa13.08□□□□□ -0.32
VPS39-211ENST00000568755 PCCAP05165 728 aaPredicted RBP13.07□□□□□ -0.32
VPS39-211ENST00000568755 DSG3P32926 999 aa13.07□□□□□ -0.32
VPS39-211ENST00000568755 BRPF1P55201 1214 aaPredicted RBP13.07□□□□□ -0.32
VPS39-211ENST00000568755 DOK7Q18PE1 504 aa13.07□□□□□ -0.32
VPS39-211ENST00000568755 TBC1D10BQ4KMP7 808 aaPredicted RBP13.07□□□□□ -0.32
VPS39-211ENST00000568755 DLK2Q6UY11 383 aa13.07□□□□□ -0.32
VPS39-211ENST00000568755 USP48Q86UV5 1035 aa13.07□□□□□ -0.32
VPS39-211ENST00000568755 CCDC191Q8NCU4 936 aa13.07□□□□□ -0.32
VPS39-211ENST00000568755 MYD88Q99836 296 aa13.07□□□□□ -0.32
VPS39-211ENST00000568755 TSKSQ9UJT2 592 aa13.07□□□□□ -0.32
VPS39-211ENST00000568755 ELL2O00472 640 aaPredicted RBP13.06□□□□□ -0.32
VPS39-211ENST00000568755 CA12O43570 354 aa13.06□□□□□ -0.32
VPS39-211ENST00000568755 VIL1P09327 827 aaKnown RBP13.06□□□□□ -0.32
VPS39-211ENST00000568755 CALD1Q05682 793 aaKnown RBP13.06□□□□□ -0.32
VPS39-211ENST00000568755 C8orf58Q8NAV2 365 aa13.06□□□□□ -0.32
VPS39-211ENST00000568755 PDE8AO60658 829 aa13.05□□□□□ -0.32
VPS39-211ENST00000568755 HSP90B1P14625 803 aaKnown RBP13.05□□□□□ -0.32
VPS39-211ENST00000568755 KRT26Q7Z3Y9 468 aa13.05□□□□□ -0.32
VPS39-211ENST00000568755 ZIC5Q96T25 663 aa13.05□□□□□ -0.32
VPS39-211ENST00000568755 METTL22Q9BUU2 404 aaPredicted RBP13.05□□□□□ -0.32
VPS39-211ENST00000568755 CWC25Q9NXE8 425 aaPredicted RBP13.05□□□□□ -0.32
VPS39-211ENST00000568755 TNRC18O15417 2968 aaPredicted RBP13.05□□□□□ -0.32
VPS39-211ENST00000568755 A0A1B0GUL6 1792 aa13.04□□□□□ -0.32
VPS39-211ENST00000568755 UFL1O94874 794 aa13.04□□□□□ -0.32
VPS39-211ENST00000568755 HUNKP57058 714 aa13.04□□□□□ -0.32
VPS39-211ENST00000568755 NOGQ13253 232 aa13.04□□□□□ -0.32
VPS39-211ENST00000568755 KIF4BQ2VIQ3 1234 aa13.04□□□□□ -0.32
VPS39-211ENST00000568755 CCDC152Q4G0S7 254 aa13.04□□□□□ -0.32
VPS39-211ENST00000568755 TSPYL6Q8N831 410 aa13.04□□□□□ -0.32
VPS39-211ENST00000568755 ZC3H12CQ9C0D7 883 aaKnown RBP13.04□□□□□ -0.32
VPS39-211ENST00000568755 GGA1Q9UJY5 639 aa13.04□□□□□ -0.32
VPS39-211ENST00000568755 PAPPA2Q9BXP8 1791 aa13.03□□□□□ -0.32
VPS39-211ENST00000568755 FAM155AB1AL88 458 aaPredicted RBP13.03□□□□□ -0.32
VPS39-211ENST00000568755 ADM5C9JUS6 153 aa13.03□□□□□ -0.32
VPS39-211ENST00000568755 JARID2Q92833 1246 aaPredicted RBP13.03□□□□□ -0.32
VPS39-211ENST00000568755 DCPSQ96C86 337 aaKnown RBP13.03□□□□□ -0.32
VPS39-211ENST00000568755 GBA2Q9HCG7 927 aaPredicted RBP13.03□□□□□ -0.32
VPS39-211ENST00000568755 ANKIB1Q9P2G1 1089 aa13.03□□□□□ -0.32
VPS39-211ENST00000568755 DDX58O95786 925 aaKnown RBP13.02□□□□□ -0.33
VPS39-211ENST00000568755 ZNF280AP59817 542 aaPredicted RBP13.02□□□□□ -0.33
VPS39-211ENST00000568755 RBM26Q5T8P6 1007 aaKnown RBP13.02□□□□□ -0.33
VPS39-211ENST00000568755 CCDC30Q5VVM6 783 aa13.02□□□□□ -0.33
VPS39-211ENST00000568755 CCDC85AQ96PX6 553 aaPredicted RBP13.02□□□□□ -0.33
VPS39-211ENST00000568755 GGA3Q9NZ52 723 aa13.02□□□□□ -0.33
VPS39-211ENST00000568755 MAP3K2Q9Y2U5 619 aa13.02□□□□□ -0.33
VPS39-211ENST00000568755 ASTN2O75129 1339 aaPredicted RBP13.02□□□□□ -0.33
VPS39-211ENST00000568755 XDHP47989 1333 aa13.02□□□□□ -0.33
VPS39-211ENST00000568755 IGKV5-2P06315 115 aa13.01□□□□□ -0.33
VPS39-211ENST00000568755 CTSWP56202 376 aa13.01□□□□□ -0.33
VPS39-211ENST00000568755 RGMBQ6NW40 437 aa13.01□□□□□ -0.33
VPS39-211ENST00000568755 RSBN1LQ6PCB5 846 aaPredicted RBP13.01□□□□□ -0.33
VPS39-211ENST00000568755 ANKRD18AQ8IVF6 992 aa13.01□□□□□ -0.33
VPS39-211ENST00000568755 AGBL3Q8NEM8 1001 aa13.01□□□□□ -0.33
VPS39-211ENST00000568755 GMLQ99445 158 aa13.01□□□□□ -0.33
VPS39-211ENST00000568755 CHMP4AQ9BY43 222 aa13.01□□□□□ -0.33
VPS39-211ENST00000568755 ECM29Q5VYK3 1845 aa13.01□□□□□ -0.33
VPS39-211ENST00000568755 PI4KAP2A4QPH2 592 aa13□□□□□ -0.33
VPS39-211ENST00000568755 ATP2B4P23634 1241 aa13□□□□□ -0.33
VPS39-211ENST00000568755 KSR2Q6VAB6 950 aa13□□□□□ -0.33
VPS39-211ENST00000568755 PI4KAP1Q8N8J0 262 aa13□□□□□ -0.33
VPS39-211ENST00000568755 C2orf69Q8N8R5 385 aa13□□□□□ -0.33
VPS39-211ENST00000568755 TTLL11Q8NHH1 800 aa13□□□□□ -0.33
VPS39-211ENST00000568755 TSR2Q969E8 191 aaKnown RBP13□□□□□ -0.33
VPS39-211ENST00000568755 MED23Q9ULK4 1368 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 WTIPA6NIX2 430 aaPredicted RBP12.99□□□□□ -0.33
VPS39-211ENST00000568755 G3V3G9 751 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 SLC10A3P09131 477 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 RGS19P49795 217 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 SCARF1Q14162 830 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 FAM161AQ3B820 660 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms